Dormancy genes from weedy rice respond divergently to seed development environments

Genetics

Volumn 172, Issue 2, 2006, Pages 1199-1211

  Gu, Xing You ^a,b   Kianian, Shahryar F ^a   Foley, Michael E ^b  

^a NORTH DAKOTA STATE UNIVERSITY   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DORMANCY; ENVIRONMENTAL FACTOR; ENVIRONMENTAL TEMPERATURE; GENE INTERACTION; GENETIC EPISTASIS; GENETIC LINKAGE; GENETIC VARIABILITY; GENOTYPE; GERMINATION; GREENHOUSE; HUMIDITY; LIGHT INTENSITY; NATURAL POPULATION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; RICE; SEED DEVELOPMENT; TEMPERATURE SENSITIVITY;

CHROMOSOME MAPPING; ENVIRONMENT; EPISTASIS, GENETIC; GENETIC MARKERS; GENOTYPE; ORYZA SATIVA; QUANTITATIVE TRAIT LOCI; SEEDS;

EID: 33644747352     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.049155     Document Type: Article

References (42)

1. ALLARD, R. W., 1996 Genetic basis of the evolution of adaptedness in plants. Euphytica 92: 1-11.
2. ALONSO-BLANCO, C., L. BENTSINK, C. J. HANHART, H. B. E. VRIES and M. KOORNNEEF, 2003 Analysis of natural allelic variation at seed dormancy loci of Arabidopsis thaliana. Genetics 164: 711-729.
3. ANDERSON, J. A., M. E. SORRELLS and S. D. TANKSLEY, 1993 RFLP analysis of genomic regions associated with resistance to preharvest sprouting in wheat. Crop Sci. 33: 453-459.
4. BEWLEY, J. D., and M. BLACK, 1982 Physiology and Biochemistry of Seeds in Relation to Germination. 2. Viability, Dormancy, and Environmental Control, pp. 60-125. Springer-Verlag, Berlin.
5. CAI, H. W., and H. MORISHIMA, 2000 Genomic regions affecting seed shattering and seed dormancy in rice. Theor. Appl. Genet. 100: 840-846.
6. CHANG, T. T., and S. T. YEN, 1969 Inheritance of grain dormancy in four rice crosses. Bot. Bul. Acad. Sin. 10: 1-9.
7. COCKERHAM, C. C., 1954 An extension of the concept of partitioning hereditary variance for analysis of covariances among relatives when epistasis is present. Genetics 39: 859-882.
8. DEKKER, J., B. DEKKER, H. HILHORST and C. KARSSEN, 1996 Weedy adaptation in Setaria spp. IV. Changes in the germinative capacity of S. faberii (Poaceae) embryos with development from anthesis to after abscission. Am. J. Bot. 83: 979-991.
9. DOEBLEY, J., A. STEC and C. GUSTUS, 1995 teosinte branched 1 and the origin of maize: evidence for epistasis and the evolution of dominance. Genetics 141: 333-346.
10. DONOHUE, K., L. DORN, C. GRIFFITH, E. KIM, A. AGUILERA et al., 2005 Environmental and genetic influences on the germination of Arabidopsis thaliana in the field. Evolution 59: 740-757.
11. FENNIMORE, S. A., W. E. NYQUIST, G. E. SHANER, R. W. DOERGE and M. E. FOLEY, 1999 A genetic model and molecular markers for wild oat (Avena fatua L.) seed dormancy. Theor. Appl. Genet. 99: 711-718.
12. GOLDBACH, H., and G. MICHAEL, 1976 Abscisic acid content of barley grain during ripening as affected by temperature and variety. Crop Sci. 16: 797-799.
13. GU, X.-Y., Z.-X. CHEN and M. E. FOLEY, 2003 Inheritance of seed dormancy in weedy rice. Crop Sci. 43: 835-843.
14. GU, X.-Y., S. F. KIANIAN and M. E. FOLEY, 2004 Multiple loci and epistases control genetic variation for seed dormancy in weedy rice (Oryza sativa). Genetics 166: 1503-1516.
15. GU, X.-Y., S. F. KIANIAN, G. A. HARELAND, B. L. HOFFER and M. E. FOLEY, 2005a Genetic analysis of adaptive syndromes interrelated with seed dormancy in weedy rice (Oryza sativa). Theor. Appl. Genet. 110: 1108-1118.
16. GU, X.-Y., S. F. KIANIAN and M. E. FOLEY, 2005b Phenotypic selection for dormancy introduced a set of adaptive haplotypes from weedy into cultivated rice. Genetics 171: 695-704.
17. GU, X.-Y., S. F. KIANIAN and M. E. FOLEY, 2006 Isolation of three dormancy QTLs as Mendelian factors in rice. Heredity 96: 93-99.
18. HAYAS, M., and Y. HIDAKA, 1979 Studies on dormancy and germination of rice seed. VIII. The temperature treatment effects upon the seed dormancy and the hull tissue-degeneration in rice seed during the ripening period and the post harvesting. Bull. Fac. Agr. Kayoshima Univ. 29: 21-32.
19. JANA, S., S. N. ACHARYA and J. M. NAYLOR, 1979 Dormancy studies in seed of Avena fatua. 10. On the inheritance of germination behavior. Can. J. Bot. 57: 1663-1667.
20. JANA, S., M. K. UPADHYAYA and S. N. ACHARYA, 1988 Genetic basis of dormancy and differential response to sodium azide in Avena fatua seeds. Can. J. Bot. 66: 635-641.
21. JOHNSON, L. P. V., 1935 The inheritance of delayed germination in hybrids of Avena fatua and A. sativa. Can. J. Res. 13: 367-387.
22. KAO, C.-H., and Z-B. ZENG, 2002 Modeling epistasis of quantitative trait loci using Cockerham's model. Genetics 160: 1243-1261.
23. KEARSEY, M. J., and H. S. POONI, 1996 The Genetical Analysis of Quantitative Traits. Chapman & Hall, London.
24. KULWAL, P. L., R. SINGH, H. S. BALYAN and P. K. GUPTA, 2004 Genetic basis of pre-harvest sprouting tolerance using single-locus and two-locus QTL analyses in bread wheat. Funct. Integr. Genomics 4: 94-101.
25. LIJAVETZKY, D., M. C. MARTINEZ, F. CARRARI and H. E. HOPP, 2000 QTL analysis and mapping of pre-harvest sprouting resistance in sorghum. Euphytica 112: 125-135.
26. LIN, S. Y., T. SASAKI and M. YANO, 1998 Mapping quantitative trait loci controlling seed dormancy and heading date in rice. Theor. Appl. Genet. 96: 997-1003.
27. LINCOLN, S., M. DALY and E. LANDER, 1992 Constructing Genetic Maps With MAPERMAKER/EXP 3.0, Ed. 3. Whitehead Institute, Cambridge, MA.
28. MUNIR, J., L. A. DORN, K. DONOHUE and J. SCHMITT, 2001 The effect of maternal photoperiod on seasonal dormancy in Arabidopsis thaliana (Brassicaceae). Am. J. Bot. 88: 1240-1249.
29. OBERTHUR, L., T. K. BLAKE, W. E. DYER and S. E. ULLRICH, 1995 Genetic analysis of seed dormancy in barley (Hordeum vulgare L.). J. Quant. Trait Loci 1: 5.
30. PATERSON, A. H., and M. E. SORRELLS, 1990 Inheritance of grain dormancy in white-kernelled wheat. Crop Sci. 30: 25-30.
31. REDDY, L. V., R. J. METZGER and T. M. CHING, 1985 Effect of temperature on seed dormancy of wheat. Crop Sci. 25: 455-458.
32. REINER, L., and V. LOCH, 1975 Forecasting dormancy in barley - ten years experience. Cereal Res. Commun. 4: 107-110.
33. SAS INSTITUTE, 1999 Statview Reference Manual. SAS Institute, Cary, NC.
34. SAWHNEY, R., and J. M. NAYLOR, 1979 Dormancy studies in seed of Avena Fatua. 9. Demonstration of genetic variability affecting the response to temperature during seed development. Can. J. Bot. 57: 59-63.
35. SUH, H. S., Y. I. SATO and H. MORISHIMA, 1997 Genetic characterization of weedy rice (Oryza sativa L.) based on morpho-physiology, isozymes and RAPD markers. Theor. Appl. Genet. 94: 316-321.
36. TAKEUCHI, Y., S. Y. LIN, T. SASAKI and M. YANO, 2003 Fine linkage mapping enables dissection of closely linked quantitative trait loci for seed dormancy and heading in rice. Theor. Appl. Genet. 107: 1174-1180.
37. ULLRICH, S. E., P. M. HAYES, W. E. DYER, T. K. BLACK and J. A. CLANCY, 1993 Quantitative trait locus analysis of seed dormancy in Steptoe barley, pp. 136-145 in Preharvest Sprouting in Cereals 1992, edited by M. K. WALKER-SIMMONS and J. L. RIED. American Association of Cereal Chemists St. Paul, MN.
38. UPADHYAY, M. P., and G. M. PAULSEN, 1988 Heritabilities and genetic variation for preharvest sprouting in progenies of Clark's Cream white winter wheat. Euphytica 38: 93-100.
39. VAN KLEUNEN, M., and M. FISCHER, 2005 Constrains on the evolution of adaptive phenotypic plasticity in plants. New Phytol. 166: 49-60.
40. WADE, M. J., 2001 Epistasis, complex traits, and mapping genes. Genetica 112/113: 59-69.
41. WATANABE, H., D. A. VAUGHAN and N. TOMOKA, 2000 Weedy rice complexes: case studies from Malaysia, Vietnam, and Surinam, pp. 25-34 in Wild and Weedy Rice in Rice Ecosystems in Asia - A Review, edited by B. B. BAKER, D. V. CHINA and M. MORTIMER. International Rice Research Institute, Manila, The Philippines.
42. ZHANG, F., G. CHEN, Q. HUANG, O. ORION, T. KRUGMAN et al., 2005 Genetic basis of barley caryopsis dormancy and seedling desiccation tolerance at the germination stage. Theor. Appl. Genet. 110: 445-453.