-
1
-
-
22244445788
-
Imaging alpha-hemolysin with molecular dynamics: Ionic conductance, osmotic permeability, and the electrostatic potential map
-
A Aksimentiev K Schulten 2005 Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map Biophys J 88 3745 3751
-
(2005)
Biophys J
, vol.88
, pp. 3745-3751
-
-
Aksimentiev, A.1
Schulten, K.2
-
3
-
-
0029645574
-
The structure of OmpF porin in a tetragonal crystal form
-
SW Cowan RM Garavito JN Jansonius JA Jenkins R Karlsson N Konig EF Pai RA Pauptit PJ Rizkallah JP Rosenbusch 1995 The structure of OmpF porin in a tetragonal crystal form Structure 3 1041 1050
-
(1995)
Structure
, vol.3
, pp. 1041-1050
-
-
Cowan, S.W.1
Garavito, R.M.2
Jansonius, J.N.3
Jenkins, J.A.4
Karlsson, R.5
Konig, N.6
Pai, E.F.7
Pauptit, R.A.8
Rizkallah, P.J.9
Rosenbusch, J.P.10
-
4
-
-
0041663886
-
Molecular origin of the cation selectivity in ompf porin: Single channel conductances vs. free energy calculation
-
C Danelon A Suenaga M Winterhalter I Yamato 2003 Molecular origin of the cation selectivity in ompf porin: single channel conductances vs. free energy calculation Biophys Chem 104 591 603
-
(2003)
Biophys Chem
, vol.104
, pp. 591-603
-
-
Danelon, C.1
Suenaga, A.2
Winterhalter, M.3
Yamato, I.4
-
6
-
-
3242734216
-
Solute uptake through general porins
-
AH Delcour 2003 Solute uptake through general porins Front Biosci 8 d1055 d1071
-
(2003)
Front Biosci
, vol.8
-
-
Delcour, A.H.1
-
8
-
-
0036389892
-
Ion permeation and selectivity of OmpF porin: A theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory
-
W Im B Roux 2002 Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory J Mol Biol 322 851 859
-
(2002)
J Mol Biol
, vol.322
, pp. 851-859
-
-
Im, W.1
Roux, B.2
-
9
-
-
0036301334
-
Ions and counterions in a biological channel: A molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution
-
W Im B Roux 2002 Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution J Mol Biol 319 1177 1197
-
(2002)
J Mol Biol
, vol.319
, pp. 1177-1197
-
-
Im, W.1
Roux, B.2
-
12
-
-
16244372752
-
Single protein pores containing molecular adapters at high temperatures
-
XF Kang L-Q Gu S Cheley H Bayley 2005 Single protein pores containing molecular adapters at high temperatures Angew Chem Int Ed Engl 44 1495 1499
-
(2005)
Angew Chem Int Ed Engl
, vol.44
, pp. 1495-1499
-
-
Kang, X.F.1
Gu, L.-Q.2
Cheley, S.3
Bayley, H.4
-
13
-
-
0018386941
-
Physicochemical characterization of 1,2-diphytanoyl-sn-glycero-3- phosphocholine in model membrane systems
-
H Lindsey NO Petersen SI Chan 1979 Physicochemical characterization of 1,2-diphytanoyl-sn-glycero-3-phosphocholine in model membrane systems Biochim Biophys Acta 555 147 167
-
(1979)
Biochim Biophys Acta
, vol.555
, pp. 147-167
-
-
Lindsey, H.1
Petersen, N.O.2
Chan, S.I.3
-
14
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
A MacKerell D Bashford M Bellott R Dunbrack J Evanseck M Field S Fischer J Gao H Guo S Ha D Joseph-McCarthy L Kuchnir K Kuczera F Lau C Mattos S Michnick T Ngo D Nguyen B Prodhom W Reiher B Roux M Schlenkrich J Smith R Stote J Straub M Watanabe J Wiorkiewicz-Kuczera D Yin M Karplus 1998 All-atom empirical potential for molecular modeling and dynamics studies of proteins J Phys Chem B 102 3586 3616
-
(1998)
J Phys Chem B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.4
Evanseck, J.5
Field, M.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-Mccarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.18
Prodhom, B.19
Reiher, W.20
Roux, B.21
Schlenkrich, M.22
Smith, J.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
15
-
-
34948868950
-
A biological porin engineered into a molecular, nanofluidic diode
-
H Miedema M Vrouenraets J Wierenga W Meijberg G Robillard B Eisenberg 2007 A biological porin engineered into a molecular, nanofluidic diode Nano Lett 7 2886 2891
-
(2007)
Nano Lett
, vol.7
, pp. 2886-2891
-
-
Miedema, H.1
Vrouenraets, M.2
Wierenga, J.3
Meijberg, W.4
Robillard, G.5
Eisenberg, B.6
-
16
-
-
0015459562
-
Formation of bimolecular membranes from lipid monolayers and a study of their electrical properties
-
M Montal P Mueller 1972 Formation of bimolecular membranes from lipid monolayers and a study of their electrical properties Proc Natl Acad Sci USA 69 3561 3566
-
(1972)
Proc Natl Acad Sci USA
, vol.69
, pp. 3561-3566
-
-
Montal, M.1
Mueller, P.2
-
17
-
-
0347479229
-
Molecular basis of bacterial outer membrane permeability revisited.
-
H Nikaido 2003 Molecular basis of bacterial outer membrane permeability revisited. Microbiol Mol Biol Rev 67 593 656
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, pp. 593-656
-
-
Nikaido, H.1
-
19
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
JC Phillips R Braun W Wang J Gumbart E Tajkhorshid E Villa C Chipot RD Skeel L Kale K Schulten 2005 Scalable molecular dynamics with NAMD J Comput Chem 26 1781 1782
-
(2005)
J Comput Chem
, vol.26
, pp. 1781-1782
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
20
-
-
0037174185
-
Orientation and interactions of dipolar molecules during transport through OmpF porin.
-
KM Robertson DP Tieleman 2002 Orientation and interactions of dipolar molecules during transport through OmpF porin. FEBS Lett 528 53 57
-
(2002)
FEBS Lett
, vol.528
, pp. 53-57
-
-
Robertson, K.M.1
Tieleman, D.P.2
-
21
-
-
3142652094
-
Theoretical and computational models of biological ion channels
-
B Roux T Allen S Berneche W Im 2004 Theoretical and computational models of biological ion channels Q Rev Biophys 37 15 103
-
(2004)
Q Rev Biophys
, vol.37
, pp. 15-103
-
-
Roux, B.1
Allen, T.2
Berneche, S.3
Im, W.4
-
23
-
-
0033579482
-
Brownian dynamics simulation of ion flow through porin channels
-
T Schirmer PS Phale 1999 Brownian dynamics simulation of ion flow through porin channels J Mol Biol 294 1159 1167
-
(1999)
J Mol Biol
, vol.294
, pp. 1159-1167
-
-
Schirmer, T.1
Phale, P.S.2
-
24
-
-
0035441903
-
Derivation of poisson and nernst-planck equations in a bath and channel from a molecular model
-
Z Schuss B Nadler RS Eisenberg 2001 Derivation of poisson and nernst-planck equations in a bath and channel from a molecular model Phys Rev E 64 036116
-
(2001)
Phys Rev e
, vol.64
, pp. 036116
-
-
Schuss, Z.1
Nadler, B.2
Eisenberg, R.S.3
-
25
-
-
33846828514
-
Ion conduction through MscS as determined by electrophysiology and simulation
-
M Sotomayor V Vasquez E Perozo K Schulten 2007 Ion conduction through MscS as determined by electrophysiology and simulation Biophys J 92 886 902
-
(2007)
Biophys J
, vol.92
, pp. 886-902
-
-
Sotomayor, M.1
Vasquez, V.2
Perozo, E.3
Schulten, K.4
-
27
-
-
0031860932
-
A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer
-
DP Tieleman HJ Berendsen 1998 A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer Biophys J 74 2786 2791
-
(1998)
Biophys J
, vol.74
, pp. 2786-2791
-
-
Tieleman, D.P.1
Berendsen, H.J.2
|