Identification, cloning and characterization of sis7 and sis10 sugar-insensitive mutants of Arabidopsis

BMC Plant Biology

Volumn 8, Issue , 2008, Pages

  Huang, Yadong ^a   Li, Chun Yao ^a   Biddle, Kelly D ^b   Gibson, Susan I ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b RICE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS;

9 CIS EPOXY CAROTENOID DIOXYGENASE; 9-CIS-EPOXY-CAROTENOID DIOXYGENASE; ABSCISIC ACID; ARABIDOPSIS PROTEIN; BACTERIAL DNA; GLUCOSE; INDOLEACETIC ACID DERIVATIVE; OXYGENASE; PHYTOHORMONE; PLANT DNA; SUCROSE; T DNA; T-DNA;

ARABIDOPSIS; ARTICLE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; MUTATION; PHENOTYPE; PLANT SEED; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEEDLING;

ABSCISIC ACID; ARABIDOPSIS; ARABIDOPSIS PROTEINS; DNA, BACTERIAL; DNA, PLANT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GLUCOSE; INDOLEACETIC ACIDS; MUTAGENESIS, INSERTIONAL; MUTATION; OXYGENASES; PHENOTYPE; PLANT GROWTH REGULATORS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEEDLING; SEEDS; SUCROSE; TRANSCRIPTION, GENETIC;

EID: 55349135572     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-8-104     Document Type: Article

References (64)

1. Plant sugar-response pathways. Part of a complex regulatory web. SI Gibson, Plant Physiol 2000 124 1532 1539 11115871 10.1104/pp.124.4.1532
2. Control of plant development and gene expression by sugar signaling. SI Gibson, Curr Opin Plant Biol 2005 8 93 102 10.1016/j.pbi.2004.11.003 15653406
3. Carbohydrate control of gene expression in higher plants. IA Graham, Res Microbiol 1996 147 572 580 10.1016/0923-2508(96)84014-9 9084772
4. Carbohydrate-modulated gene expression in plants. KE Koch, Annu Rev Plant Physiol Plant Mol Biol 1996 47 509 540 10.1146/annurev.arplant.47.1.509 15012299
5. Sugar sensing and signaling in plants: conserved and novel mechanisms. F Rolland E Baena-Gonzalez J Sheen, Annu Rev Plant Biol 2006 57 675 709 10.1146/annurev.arplant.57.032905.105441 16669778
6. Sugar sensing and signaling in plants. F Rolland B Moore J Sheen, Plant Cell 2002 14 Suppl S185 S205 12045277
7. Genetic approaches to understanding sugar-response pathways. F Rook MW Bevan, J Exp Bot 2003 54 495 501 10.1093/jxb/erg054 12508060
8. Sugar-induced signal transduction in plants. S Smeekens, Annu Rev Plant Physiol Plant Mol Biol 2000 51 49 81 10.1146/annurev.arplant.51.1.49 15012186
9. Sugars as signal molecules in plant seed development. U Wobus H Weber, Biol Chem 1999 380 937 944 10.1515/BC.1999.116 10494845
10. Cellular and genetic responses of plants to sugar starvation. S-M Yu, Plant Physiol 1999 121 687 693 10557216 10.1104/pp.121.3.687
11. Analysis of Arabidopsis glucose insensitive mutants, gin5 and gin6, reveals a central role of the plant hormone ABA in the regulation of plant vegetative development by sugar. F Arenas-Huertero A Arroyo L Zhou J Sheen P León, Genes Dev 2000 14 2085 2096 10950871
12. The sugar-insensitive1 (sis1) mutant of Arabidopsis is allelic to ctr1. SI Gibson RJ Laby D Kim, Biochem Biophys Res Commun 2001 280 196 203 10.1006/bbrc.2000.4062 11162499
13. The Arabidopsis SUCROSE UNCOUPLED-6 gene is identical to ABSCISIC ACID INSENSITIVE-4: involvement of abscisic acid in sugar responses. C Huijser A Kortstee J Pego P Weisbeek E Wisman S Smeekens, Plant J 2000 23 577 586 10.1046/j.1365-313x.2000.00822.x 10972884
14. Role of the Arabidopsis glucose sensor HXK1 in nutrient, light, and hormonal signaling. B Moore L Zhou F Rolland Q Hall WH Cheng YX Liu I Hwang T Jones J Sheen, Science 2003 300 332 336 10.1126/science.1080585 12690200
15. Glucose and ethylene signal transduction crosstalk revealed by an Arabidopsis glucose-insensitive mutant. L Zhou JC Jang TL Jones J Sheen, Proc Natl Acad Sci USA 1998 95 10294 10299 9707641 10.1073/pnas.95.17.10294
16. The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response. RJ Laby MS Kincaid D Kim SI Gibson, Plant J 2000 23 587 596 10.1046/j.1365-313x.2000.00833.x 10972885
17. A unique short-chain dehydrogenase/reductase in Arabidopsis glucose signaling and abscisic acid biosynthesis and functions. WH Cheng A Endo L Zhou J Penney H-C Chen A Arroyo P Leon E Nambara T Asami M Seo T Koshiba J Sheen, Plant Cell 2002 14 2723 2743 12417697 10.1105/tpc.006494
18. Impaired sucrose-induction mutants reveal the modulation of sugar-induced starch biosynthetic gene expression by abscisic acid signalling. F Rook F Corke R Card G Munz C Smith MW Bevan, Plant J 2001 26 421 433 10.1046/j.1365-313X. 2001.2641043.x 11439129
19. Isolation and characterization of abscisic acid-deficient Arabidopsis mutants at two new loci. KM Léon-Kloosterziel MA Gil GJ Ruijs SE Jacobsen NE Olszewski SH Schwartz JA Zeevaart M Koornneef, Plant J 1996 10 655 661 10.1046/j.1365-313X.1996.10040655.x 8893542
20. The Arabidopsis LOS5/ABA3 locus encodes a molybdenum cofactor sulfurase and modulates cold stress- and osmotic stress-responsive gene expression. L Xiong M Ishitani H Lee J-K Zhu, Plant Cell 2001 13 2063 2083 11549764 10.1105/tpc.13.9.2063
21. Mutations at two new Arabidopsis ABA response loci are similar to the abi3 mutations. RR Finkelstein, Plant J 1994 5 765 771 10.1046/j.1365-313X.1994. 5060765.x
22. The Arabidopsis abscisic acid response locus ABI4 encodes an Apetala2 domain protein. RR Finkelstein ML Wang TJ Lynch S Rao HM Goodman, Plant Cell 1998 10 1043 1054 9634591 10.1105/tpc.10.6.1043
23. A screen for genes that function in abscisic acid signaling in Arabidopsis thaliana. E Nambara M Suzuki S Abrams DR McCarty Y Kamiya P McCourt, Genetics 2002 161 1247 1255 12136027
24. Phytohormone signalling pathways interact with sugars during seed germination and seedling development. K Yuan J Wysocka-Diller, J Exp Bot 2006 57 3359 3367 10.1093/jxb/erl096 16916886
25. A gymnosperm ABI3 gene functions in a severe abscisic acid-insensitive mutant of Arabidopsis (abi3-6) to restore the wild-type phenotype and demonstrates a strong synergistic effect with sugar in the inhibition of post-germinative growth. Y Zeng AR Kermode, Plant Mol Biol 2004 56 731 746 10.1007/s11103-004-4952-y 15803411
26. Regulation of osmotic stress-responsive gene expression by the LOS6/ABA1 locus in Arabidopsis. L Xiong H Lee M Ishitani J-K Zhu, J Biol Chem 2002 277 8588 8596 10.1074/jbc.M109275200 11779861
27. Uncoupling the effects of abscisic acid on plant growth and water relations. Analysis of sto1/nced3, an abscisic acid-deficient but salt stress-tolerant mutant in Arabidopsis. B Ruggiero H Koiwa Y Manabe TM Quist G Inan F Saccardo RJ Joly PM Hasegawa RA Bressan A Maggio, Plant Physiol 2004 136 3134 3147 15466233 10.1104/pp.104.046169
28. The isolation and characterization of abscisic acid-insensitive mutants of Arabidopsis thaliana. M Koornneef G Reuling CM Karssen, Physiol Plant 1984 61 377 383 10.1111/j.1399-3054.1984.tb06343.x
29. Regulation of drought tolerance by gene manipulation of 9-cis -epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis. S Iuchi M Kobayashi T Taji M Naramoto M Seki T Kato S Tabata Y Kakubari K Yamaguchi-Shinozaki K Shinozaki, Plant J 2001 27 325 333 10.1046/j.1365-313x.2001.01096.x 11532178
30. Isolation of the Arabidopsis ABI3 gene by positional cloning. J Giraudat B Hauge C Valon J Smalle F Parcy H Goodman, Plant Cell 1992 4 1251 1261 1359917 10.1105/tpc.4.10.1251
31. Genetic Resources in Arabidopsis. AR Kranz B Kirchheim, Arabidopsis Inf Serv 1987 24 1 111
32. Hexokinase as a sugar sensor in higher plants. JC Jang P León L Zhou J Sheen, Plant Cell 1997 9 5 19 9014361 10.1105/tpc.9.1.5
33. Pleiotropic control of glucose and hormone responses by PRL1, a nuclear WD protein, in Arabidopsis. K Németh K Salchert P Putnoky R Bhalerao Z Koncz-Kφlmφn B Stankovic-Stangeland L Bakó J Mathur L Ökrész S Stabel P Geigenberger M Stitt GP Rédei J Schell C Koncz, Genes Dev 1998 12 3059 3073 9765207 10.1101/gad.12.19.3059
34. A library of Arabidopsis 35S-cDNA lines for identifying transcripts that cause phenotypes when overexpressed or cosuppressed. S LeClere B Bartel, Plant Mol Biol 2001 46 695 703 10.1023/A:1011699722052 11575724
35. Mannose inhibits Arabidopsis germination via a hexokinase-mediated step. JV Pego PJ Weisbeek SCM Smeekens, Plant Physiol 1999 119 1017 1023 10069839 10.1104/pp.119.3.1017
36. Mutations at the SPINDLY locus of Arabidopsis alter gibberellin signal transduction. SE Jacobsen NE Olszewski, Plant Cell 1993 5 887 896 8400871 10.1105/tpc.5.8.887
37. Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family. BC Tan LM Joseph WT Deng L Liu QB Li K Cline DR McCarty, Plant J 2003 35 44 56 10.1046/j.1365-313X.2003.01786.x 12834401
38. Regulation of ABA level and water-stress tolerance of Arabidopsis by ectopic expression of a peanut 9-cis-epoxycarotenoid dioxygenase gene. X-R Wan L Li, Biochem Biophys Res Commun 2006 347 1030 1038 10.1016/j.bbrc.2006.07.026 16870153
39. The Arabidopsis Information Resource. http://www.arabidopsis.org/tools/ bulk/go/index.jsp
40. GeneMerge. http://genemerge.cbcb.umd.edu/online/
41. GeneMerge - post-genomic analysis, data mining, and hypothesis testing. CI Castillo-Davis DL Hartl, Bioinformatics 2003 19 891 892 10.1093/ bioinformatics/btg114 12724301
42. Cytochrome P450 CYP79B2 from Arabidopsis catalyzes the conversion of tryptophan to indole-3-acetaldoxime, a precursor of indole glucosinolates and indole-3-acetic acid. MD Mikkelsen CH Hansen U Wittstock BA Halkier, J Biol Chem 2000 275 33712 33717 10.1074/jbc.M001667200 10922360
43. Arabidopsis cytochrome P450s that catalyze the first step of tryptophan-dependent indole-3-acetic acid biosynthesis. AK Hull R Vij JL Celenza, Proc Natl Acad Sci USA 2000 97 2379 2384 10681464 10.1073/pnas. 040569997
44. Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. PE Staswick B Serban M Rowe I Tiryaki MT Maldonado MC Maldonado W Suza, Plant Cell 2005 17 616 627 15659623 10.1105/tpc.104.026690
45. The photomorphogenesis-related mutant red1 is defective in CYP83B1, a red light-induced gene encoding a cytochrome P450 required for normal auxin homeostasis. U Hoecker G Toledo-Ortiz J Bender PH Quail, Planta 2004 219 195 200 10.1007/s00425-004-1211-z 14963708
46. The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. I Blilou J Xu M Wildwater V Willemsen I Paponov J Friml R Heidstra M Aida K Palme B Scheres, Nature 2005 433 39 44 10.1038/nature03184 15635403
47. The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis. SM Brady SF Sarkar D Bonetta P McCourt, Plant J 2003 34 67 75 10.1046/j.1365-313X.2003.01707.x 12662310
48. Osmotic regulation of root system architecture. KI Deak J Malamy, Plant J 2005 43 17 28 10.1111/j.1365-313X.2005.02425.x 15960613
49. Crosstalk between ABA and auxin signaling pathways in roots of Arabidopsis thaliana (L.) Heynh. CD Rock X Sun, Planta 2005 222 98 106 10.1007/s00425-005-1521-9 15889272
50. Genome-wide insertional mutagenesis of Arabidopsis thaliana. JM Alonso AN Stepanova TJ Leisse CJ Kim H Chen P Shinn DK Stevenson J Zimmerman P Barajas R Cheuk, Science 2003 301 1849 10.1126/science.1086391 14512606
51. Three genes that affect sugar sensing (abscisic acid insensitive 4, abscisic acid insensitive 5, and constitutive triple response 1) are differentially regulated by glucose in Arabidopsis. A Arroyo F Bossi RR Finkelstein P León, Plant Physiol 2003 133 231 242 12970489 10.1104/pp.103.021089
52. Genetic interactions between ABA, ethylene and sugar signaling pathways. S Gazzarrini P McCourt, Curr Opin Plant Biol 2001 4 387 391 10.1016/S1369- 5266(00)00190-4 11597495
53. Mechanisms of glucose signaling during germination of Arabidopsis. J Price T-C Li SG Kang JK Na J-C Jang, Plant Physiol 2003 132 1424 1438 12857824 10.1104/pp.103.020347
54. The 9-cis -epoxycarotenoid cleavage reaction is the key regulatory step of abscisic acid biosynthesis in water-stressed bean. X Qin JA Zeevaart, Proc Natl Acad Sci USA 1999 96 15354 15361 10611388 10.1073/pnas.96.26.15354
55. Regulation of abscisic acid biosynthesis. L Xiong JK Zhu, Plant Physiol 2003 133 29 36 12970472 10.1104/pp.103.025395
56. KEEP ON GOING, a RING E3 ligase essential for Arabidopsis growth and development, is involved in abscisic acid signaling. SL Stone LA Williams LM Farmer RD Vierstra J Callis, Plant Cell 2006 18 3415 3428 17194765 10.1105/tpc.106.046532
57. Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy. V Lefebvre H North A Frey B Sotta M Seo M Okamoto E Nambara A Marion-Poll, Plant J 2006 45 309 319 10.1111/j.1365-313X.2005.02622.x 16412079
58. Glucose delays seed germination in Arabidopsis thaliana. BJW Dekkers JAMJ Schuurmans SCM Smeekens, Planta 2004 218 579 588 10.1007/s00425-003-1154-9 14648119
59. Isolation of an internal deletion mutant of the Arabidopsis thaliana ABI3 gene. E Nambara K Keith P McCourt S Naito, Plant Cell Physiol 1994 35 509 513 8055176
60. Abscisic acid signaling in seeds and seedlings. RR Finkelstein SSL Gampala CD Rock, Plant Cell 2002 14 Suppl S15 S45 12045268
61. Alkali treatment for rapid preparation of plant material for reliable PCR analysis. VI Klimyuk BJ Carroll CM Thomas JD Jones, Plant J 1993 3 493 494 10.1046/j.1365-313X.1993.t01-26-00999.x 8220456
62. Arabidopsis map-based cloning in the post-genome era. G Jander SR Norris SD Rounsley DF Bush IM Levin RL Last, Plant Physiol 2002 129 440 450 12068090 10.1104/pp.003533
63. Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you. W Lukowitz CS Gillmor WR Scheible, Plant Physiol 2000 123 795 805 10889228 10.1104/pp.123.3.795
64. A small-scale procedure for the rapid isolation of plant RNAs. TC Verwoerd BM Dekker A Hoekema, Nucleic Acids Res 1989 17 2362 2468132 10.1093/nar/17.6.2362