메뉴 건너뛰기




Volumn 382, Issue 1, 2008, Pages 98-106

Co-selection of West Nile virus nucleotides that confer resistance to an antisense oligomer while maintaining long-distance RNA/RNA base pairings

Author keywords

Antiviral therapy; Flavivirus replication; Genome cyclization; RNA cis elements; West Nile virus

Indexed keywords

ANTISENSE OLIGONUCLEOTIDE; NUCLEOTIDE; VIRUS RNA;

EID: 55249122870     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2008.08.044     Document Type: Article
Times cited : (12)

References (41)
  • 1
    • 23844507858 scopus 로고    scopus 로고
    • Role of RNA structures present at the 3′UTR of dengue virus on translation, RNA synthesis, and viral replication
    • Alvarez D.E., De Lella Ezcurra A.L., Fucito S., and Gamarnik A.V. Role of RNA structures present at the 3′UTR of dengue virus on translation, RNA synthesis, and viral replication. Virology 339 (2005) 200-212
    • (2005) Virology , vol.339 , pp. 200-212
    • Alvarez, D.E.1    De Lella Ezcurra, A.L.2    Fucito, S.3    Gamarnik, A.V.4
  • 3
    • 42749084987 scopus 로고    scopus 로고
    • Functional analysis of dengue virus cyclization sequences located at the 5′ and 3′UTRs
    • Alvarez D., Filomatori C., and Gamarnik A. Functional analysis of dengue virus cyclization sequences located at the 5′ and 3′UTRs. Virology 375 1 (2008) 223-235
    • (2008) Virology , vol.375 , Issue.1 , pp. 223-235
    • Alvarez, D.1    Filomatori, C.2    Gamarnik, A.3
  • 4
    • 26444489068 scopus 로고    scopus 로고
    • Inhibition of interferon-stimulated JAK-STAT signaling by a tick-borne flavivirus and identification of NS5 as an interferon antagonist
    • Best S.M., Morris K.L., Shannon J.G., Robertson S.J., Mitzel D.N., Park G.S., Boer E., Wolfinbarger J.B., and Bloom M.E. Inhibition of interferon-stimulated JAK-STAT signaling by a tick-borne flavivirus and identification of NS5 as an interferon antagonist. J. Virol. 79 20 (2005) 12828-12839
    • (2005) J. Virol. , vol.79 , Issue.20 , pp. 12828-12839
    • Best, S.M.1    Morris, K.L.2    Shannon, J.G.3    Robertson, S.J.4    Mitzel, D.N.5    Park, G.S.6    Boer, E.7    Wolfinbarger, J.B.8    Bloom, M.E.9
  • 5
    • 0038325607 scopus 로고    scopus 로고
    • A stable full-length yellow fever virus cDNA clone and the role of conserved RNA elements in flavivirus replication
    • Bredenbeek P.J., Kooi E.A., Lindenbach B., Huijkman N., Rice C.M., and Spaan W.J. A stable full-length yellow fever virus cDNA clone and the role of conserved RNA elements in flavivirus replication. J. Gen. Virol. 84 Pt 5 (2003) 1261-1268
    • (2003) J. Gen. Virol. , vol.84 , Issue.PART 5 , pp. 1261-1268
    • Bredenbeek, P.J.1    Kooi, E.A.2    Lindenbach, B.3    Huijkman, N.4    Rice, C.M.5    Spaan, W.J.6
  • 6
    • 0037303672 scopus 로고    scopus 로고
    • Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization
    • Corver J., Lenches E., Smith K., Robison R., Sando T., Strauss E., and Strauss J. Fine mapping of a cis-acting sequence element in yellow fever virus RNA that is required for RNA replication and cyclization. J. Virol. 77 3 (2003) 2265-2270
    • (2003) J. Virol. , vol.77 , Issue.3 , pp. 2265-2270
    • Corver, J.1    Lenches, E.2    Smith, K.3    Robison, R.4    Sando, T.5    Strauss, E.6    Strauss, J.7
  • 7
    • 0035051928 scopus 로고    scopus 로고
    • West Nile virus recombinant DNA vaccine protects mouse and horse from virus challenge and expresses in vitro a noninfectious recombinant antigen that can be used in enzyme-linked immunosorbent assays
    • Davis B., Chang G., Cropp B., Roehrig J., Martin D., Mitchell C., Bowen R., and Bunning M. West Nile virus recombinant DNA vaccine protects mouse and horse from virus challenge and expresses in vitro a noninfectious recombinant antigen that can be used in enzyme-linked immunosorbent assays. J. Virol. 75 9 (2001) 4040-4047
    • (2001) J. Virol. , vol.75 , Issue.9 , pp. 4040-4047
    • Davis, B.1    Chang, G.2    Cropp, B.3    Roehrig, J.4    Martin, D.5    Mitchell, C.6    Bowen, R.7    Bunning, M.8
  • 10
    • 55249086182 scopus 로고    scopus 로고
    • Dong, H., Zhang, B., and Shi, P.-Y., in press. Terminal structures of West Nile virus genomic RNA and their interactions with viral NS5 protein. Virology ([Electronic publication ahead of print] PMID: 18799181).
    • Dong, H., Zhang, B., and Shi, P.-Y., in press. Terminal structures of West Nile virus genomic RNA and their interactions with viral NS5 protein. Virology ([Electronic publication ahead of print] PMID: 18799181).
  • 11
    • 33747344212 scopus 로고    scopus 로고
    • A 5′ RNA element promotes dengue virus RNA synthesis on a circular genome
    • Filomatori C., Lodeiro M., Alvarez D., Samsa M., Pietrasanta L., and Gamarnik A. A 5′ RNA element promotes dengue virus RNA synthesis on a circular genome. Genes Dev. 20 16 (2006) 2238-2249
    • (2006) Genes Dev. , vol.20 , Issue.16 , pp. 2238-2249
    • Filomatori, C.1    Lodeiro, M.2    Alvarez, D.3    Samsa, M.4    Pietrasanta, L.5    Gamarnik, A.6
  • 12
    • 35348925573 scopus 로고    scopus 로고
    • Flaviviruses
    • Knipe D.M., and Howley P.M. (Eds), Lippincott William & Wilkins, Philadelphia, Pa
    • Gubler D., Kuno G., and Markoff L. Flaviviruses. In: Knipe D.M., and Howley P.M. (Eds). Fields Virology 5th. vol. 1 (2007), Lippincott William & Wilkins, Philadelphia, Pa 1153-1253
    • (2007) Fields Virology 5th. , vol.1 , pp. 1153-1253
    • Gubler, D.1    Kuno, G.2    Markoff, L.3
  • 13
    • 13744259524 scopus 로고    scopus 로고
    • West Nile virus inhibits the signal transduction pathway of alpha interferon
    • Guo J., Hayashi J., and Seeger C. West Nile virus inhibits the signal transduction pathway of alpha interferon. J. Virol. 79 3 (2005) 1343-1350
    • (2005) J. Virol. , vol.79 , Issue.3 , pp. 1343-1350
    • Guo, J.1    Hayashi, J.2    Seeger, C.3
  • 14
    • 0023645817 scopus 로고
    • Conserved elements in the 3′ untranslated region of flavivirus RNAs and potential cyclization sequences
    • Hahn C.S., Hahn Y.S., Rice C.M., Lee E., Dalgarno L., Strauss E.G., and Strauss J.H. Conserved elements in the 3′ untranslated region of flavivirus RNAs and potential cyclization sequences. J. Mol. Biol. 198 1 (1987) 33-41
    • (1987) J. Mol. Biol. , vol.198 , Issue.1 , pp. 33-41
    • Hahn, C.S.1    Hahn, Y.S.2    Rice, C.M.3    Lee, E.4    Dalgarno, L.5    Strauss, E.G.6    Strauss, J.H.7
  • 15
    • 30044452235 scopus 로고    scopus 로고
    • Inhibition of dengue virus translation and RNA synthesis by a morpholino oligomer targeted to the top of the terminal 3′ stem-loop structure
    • Holden K., Stein D., Pierson T., Ahmed A., Clyde K., Iversen P., and Harris E. Inhibition of dengue virus translation and RNA synthesis by a morpholino oligomer targeted to the top of the terminal 3′ stem-loop structure. Virology 344 2 (2006) 439-452
    • (2006) Virology , vol.344 , Issue.2 , pp. 439-452
    • Holden, K.1    Stein, D.2    Pierson, T.3    Ahmed, A.4    Clyde, K.5    Iversen, P.6    Harris, E.7
  • 16
    • 0034984219 scopus 로고    scopus 로고
    • Essential role of cyclization sequences in flavivirus RNA replication
    • Khromykh A.A., Meka H., Guyatt K.J., and Westaway E.G. Essential role of cyclization sequences in flavivirus RNA replication. J. Virol. 75 14 (2001) 6719-6728
    • (2001) J. Virol. , vol.75 , Issue.14 , pp. 6719-6728
    • Khromykh, A.A.1    Meka, H.2    Guyatt, K.J.3    Westaway, E.G.4
  • 17
    • 16244366477 scopus 로고    scopus 로고
    • Inhibition of dengue virus serotypes 1 to 4 in vero cell cultures with morpholino oligomers
    • Kinney R., Huang C., Rose B., Kroeker A., Dreher T., Iversen P., and Stein D. Inhibition of dengue virus serotypes 1 to 4 in vero cell cultures with morpholino oligomers. J. Virol. 79 8 (2005) 5116-5128
    • (2005) J. Virol. , vol.79 , Issue.8 , pp. 5116-5128
    • Kinney, R.1    Huang, C.2    Rose, B.3    Kroeker, A.4    Dreher, T.5    Iversen, P.6    Stein, D.7
  • 18
    • 33645783003 scopus 로고    scopus 로고
    • Functional analysis of the tick-borne encephalitis virus cyclization elements indicates major differences between mosquito-borne and tick-borne flaviviruses
    • Kofler R.M., Hoenninger V.M., Thurner C., and Mandl C.W. Functional analysis of the tick-borne encephalitis virus cyclization elements indicates major differences between mosquito-borne and tick-borne flaviviruses. J. Virol. 80 8 (2006) 4099-4113
    • (2006) J. Virol. , vol.80 , Issue.8 , pp. 4099-4113
    • Kofler, R.M.1    Hoenninger, V.M.2    Thurner, C.3    Mandl, C.W.4
  • 20
    • 0036232747 scopus 로고    scopus 로고
    • Mutations in the yellow Fever virus nonstructural protein NS2A selectively block production of infectious particles
    • Kummerer B.M., and Rice C.M. Mutations in the yellow Fever virus nonstructural protein NS2A selectively block production of infectious particles. J. Virol. 76 10 (2002) 4773-4784
    • (2002) J. Virol. , vol.76 , Issue.10 , pp. 4773-4784
    • Kummerer, B.M.1    Rice, C.M.2
  • 22
    • 34748873170 scopus 로고    scopus 로고
    • Flaviviridae: the virus and their replication
    • Knipe D.M., and Howley P.M. (Eds), Lippincott William & Wilkins
    • Lindenbach B.D., Thiel H.-J., and Rice C.M. Flaviviridae: the virus and their replication. In: Knipe D.M., and Howley P.M. (Eds). Fields Virology. Fourth ed. (2007), Lippincott William & Wilkins
    • (2007) Fields Virology. Fourth ed.
    • Lindenbach, B.D.1    Thiel, H.-J.2    Rice, C.M.3
  • 23
    • 0038421087 scopus 로고    scopus 로고
    • Molecular and functional analyses of Kunjin virus infectious cDNA clones demonstrate the essential roles for NS2A in virus assembly and for a nonconservative residue in NS3 in RNA replication
    • Liu W.J., Chen H.B., and Khromykh A.A. Molecular and functional analyses of Kunjin virus infectious cDNA clones demonstrate the essential roles for NS2A in virus assembly and for a nonconservative residue in NS3 in RNA replication. J. Virol. 77 14 (2003) 7804-7813
    • (2003) J. Virol. , vol.77 , Issue.14 , pp. 7804-7813
    • Liu, W.J.1    Chen, H.B.2    Khromykh, A.A.3
  • 24
    • 13744254078 scopus 로고    scopus 로고
    • Inhibition of interferon signaling by the New York 99 strain and Kunjin subtype of West Nile virus involves blockage of STAT1 and STAT2 activation by nonstructural proteins
    • Liu W., Wang X., Mokhonov V., Shi P., Randall R., and Khromykh A. Inhibition of interferon signaling by the New York 99 strain and Kunjin subtype of West Nile virus involves blockage of STAT1 and STAT2 activation by nonstructural proteins. J. Virol. 79 3 (2005) 1934-1942
    • (2005) J. Virol. , vol.79 , Issue.3 , pp. 1934-1942
    • Liu, W.1    Wang, X.2    Mokhonov, V.3    Shi, P.4    Randall, R.5    Khromykh, A.6
  • 25
    • 0141570502 scopus 로고    scopus 로고
    • Functional analysis of mosquito-borne flavivirus conserved sequence elements within 3′ untranslated region of West Nile virus using a reporting replicon that differentiates between viral translation and RNA replication
    • Lo L., Tilgner M., Bernard K., and Shi P.-Y. Functional analysis of mosquito-borne flavivirus conserved sequence elements within 3′ untranslated region of West Nile virus using a reporting replicon that differentiates between viral translation and RNA replication. J. Virol. 77 18 (2003) 10004-10014
    • (2003) J. Virol. , vol.77 , Issue.18 , pp. 10004-10014
    • Lo, L.1    Tilgner, M.2    Bernard, K.3    Shi, P.-Y.4
  • 26
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews D.H., Sabina J., Zuker M., and Turner D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288 (1999) 911-940
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 27
    • 0029893436 scopus 로고    scopus 로고
    • Dengue type 4 virus mutants containing deletions in the 3′ noncoding region of the RNA genome: analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys
    • Men R., Bray M., Clark D., Chanock R.M., and Lai C.J. Dengue type 4 virus mutants containing deletions in the 3′ noncoding region of the RNA genome: analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys. J. Virol. 70 6 (1996) 3930-3937
    • (1996) J. Virol. , vol.70 , Issue.6 , pp. 3930-3937
    • Men, R.1    Bray, M.2    Clark, D.3    Chanock, R.M.4    Lai, C.J.5
  • 28
    • 3042679011 scopus 로고    scopus 로고
    • Recombinant canarypoxvirus vaccine carrying the prM/E genes of West Nile virus protects horses against a West Nile virus-mosquito challenge
    • Minke J.M., Siger L., Karaca K., Austgen L., Gordy P., Bowen R., Renshaw R.W., Loosmore S., Audonnet J.C., and Nordgren B. Recombinant canarypoxvirus vaccine carrying the prM/E genes of West Nile virus protects horses against a West Nile virus-mosquito challenge. Arch. Virol. Suppl.(18) (2004) 221-230
    • (2004) Arch. Virol. , vol.SUPPL.18 , pp. 221-230
    • Minke, J.M.1    Siger, L.2    Karaca, K.3    Austgen, L.4    Gordy, P.5    Bowen, R.6    Renshaw, R.W.7    Loosmore, S.8    Audonnet, J.C.9    Nordgren, B.10
  • 32
    • 41149101538 scopus 로고    scopus 로고
    • Yellow fever virus NS3 plays an essential role in virus assembly independent of its known enzymatic functions
    • Patkar C.G., and Kuhn R.J. Yellow fever virus NS3 plays an essential role in virus assembly independent of its known enzymatic functions. J. Virol. 82 7 (2008) 3342-3352
    • (2008) J. Virol. , vol.82 , Issue.7 , pp. 3342-3352
    • Patkar, C.G.1    Kuhn, R.J.2
  • 33
    • 55249108126 scopus 로고    scopus 로고
    • Shi, P.Y., in press. Novel therapeutics against West Nile virus. West Nile Encephalitis Virus Infection: Viral pathogenesis and the Host Immune Response In M.S. Diamond (ed), Springer Publisher.
    • Shi, P.Y., in press. Novel therapeutics against West Nile virus. West Nile Encephalitis Virus Infection: Viral pathogenesis and the Host Immune Response In M.S. Diamond (ed), Springer Publisher.
  • 34
    • 0036107695 scopus 로고    scopus 로고
    • Infectious cDNA clone of the epidemic West Nile virus from New York City
    • Shi P.Y., Tilgner M., Lo M.K., Kent K.A., and Bernard K.A. Infectious cDNA clone of the epidemic West Nile virus from New York City. J. Virol. 76 12 (2002) 5847-5856
    • (2002) J. Virol. , vol.76 , Issue.12 , pp. 5847-5856
    • Shi, P.Y.1    Tilgner, M.2    Lo, M.K.3    Kent, K.A.4    Bernard, K.A.5
  • 35
    • 49649101361 scopus 로고    scopus 로고
    • Stein, D., Huang, C., Silengo, S., Amantana, A., Crumley, S., Blouch, R., Iversen, P., Kinney, R., 2008. Treatment of AG129 mice with antisense morpholino oligomers increases survival time following challenge with dengue 2 virus. J. Antimicrob. Chemother 62 (3), 555-565.
    • Stein, D., Huang, C., Silengo, S., Amantana, A., Crumley, S., Blouch, R., Iversen, P., Kinney, R., 2008. Treatment of AG129 mice with antisense morpholino oligomers increases survival time following challenge with dengue 2 virus. J. Antimicrob. Chemother 62 (3), 555-565.
  • 36
    • 0030862707 scopus 로고    scopus 로고
    • Morpholino antisense oligomers: design, preparation, and properties
    • Summerton J., and Weller D. Morpholino antisense oligomers: design, preparation, and properties. Antisense Nucleic Acid Drug Dev. 7 3 (1997) 187-195
    • (1997) Antisense Nucleic Acid Drug Dev. , vol.7 , Issue.3 , pp. 187-195
    • Summerton, J.1    Weller, D.2
  • 37
    • 0033585015 scopus 로고    scopus 로고
    • A novel in vitro replication system for dengue virus. Initiation of RNA synthesis at the 3′-end of exogenous viral RNA templates requires 5′-and 3′-terminal complementary sequence motifs of the viral RNA
    • You S., and Padmanabhan R. A novel in vitro replication system for dengue virus. Initiation of RNA synthesis at the 3′-end of exogenous viral RNA templates requires 5′-and 3′-terminal complementary sequence motifs of the viral RNA. J. Biol. Chem. 274 47 (1999) 33714-33722
    • (1999) J. Biol. Chem. , vol.274 , Issue.47 , pp. 33714-33722
    • You, S.1    Padmanabhan, R.2
  • 38
    • 0035844132 scopus 로고    scopus 로고
    • In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5′- and 3′-terminal regions that influence RNA structure
    • You S., Falgout B., Markoff L., and Padmanabhan R. In vitro RNA synthesis from exogenous dengue viral RNA templates requires long range interactions between 5′- and 3′-terminal regions that influence RNA structure. J. Biol. Chem. 276 19 (2001) 15581-15591
    • (2001) J. Biol. Chem. , vol.276 , Issue.19 , pp. 15581-15591
    • You, S.1    Falgout, B.2    Markoff, L.3    Padmanabhan, R.4
  • 39
    • 41849125306 scopus 로고    scopus 로고
    • Specific requirements for elements of the 5′ and 3′ terminal regions in flavivirus RNA synthesis and viral replication
    • Yu L., Nomaguchi M., Padmanabhan R., and Markoff L. Specific requirements for elements of the 5′ and 3′ terminal regions in flavivirus RNA synthesis and viral replication. Virology 374 1 (2008) 170-185
    • (2008) Virology , vol.374 , Issue.1 , pp. 170-185
    • Yu, L.1    Nomaguchi, M.2    Padmanabhan, R.3    Markoff, L.4
  • 40
    • 40649100035 scopus 로고    scopus 로고
    • West Nile virus genome cyclization and RNA replication require two pairs of long-distance RNA interactions
    • Zhang B., Dong H., Stein D.A., Iversen P.L., and Shi P.Y. West Nile virus genome cyclization and RNA replication require two pairs of long-distance RNA interactions. Virology 273 (2008) 1-13
    • (2008) Virology , Issue.273 , pp. 1-13
    • Zhang, B.1    Dong, H.2    Stein, D.A.3    Iversen, P.L.4    Shi, P.Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.