메뉴 건너뛰기




Volumn 427, Issue 1-2, 2008, Pages 124-128

Birth-and-death evolution of the internalin multigene family in Listeria

Author keywords

Bacteria; Gene family; Lateral transfer; Paralog sorting

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL VIRULENCE; CONTROLLED STUDY; GENE DUPLICATION; GENE FREQUENCY; GENE TRANSFER; INTERNALIN GENE; LISTERIA; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL;

EID: 55149123541     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2008.09.007     Document Type: Article
Times cited : (12)

References (29)
  • 2
    • 10644230266 scopus 로고    scopus 로고
    • A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land
    • Battistuzzi F.U., Feijao A., and Hedges S.B. A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. BMC Evol. Biol. 4 (2004) 44
    • (2004) BMC Evol. Biol. , vol.4 , pp. 44
    • Battistuzzi, F.U.1    Feijao, A.2    Hedges, S.B.3
  • 3
    • 41149085409 scopus 로고    scopus 로고
    • Crystal structure and standardized geometric analysis of InlJ, a listerial virulence factor and leucine-rich repeat protein with a novel cysteine ladder
    • Bublitz M., et al. Crystal structure and standardized geometric analysis of InlJ, a listerial virulence factor and leucine-rich repeat protein with a novel cysteine ladder. J. Mol. Biol. 378 (2008) 87-96
    • (2008) J. Mol. Biol. , vol.378 , pp. 87-96
    • Bublitz, M.1
  • 4
    • 33846476262 scopus 로고    scopus 로고
    • Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution
    • Dagan T., and Martin W. Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 870-875
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 870-875
    • Dagan, T.1    Martin, W.2
  • 5
    • 33645051956 scopus 로고    scopus 로고
    • A spontaneous genomic deletion in Listeria ivanovii identifies LIPI-2, a species-specific pathogenicity island encoding sphingomyelinase and numerous internalins
    • Domínguez-Bernal G., et al. A spontaneous genomic deletion in Listeria ivanovii identifies LIPI-2, a species-specific pathogenicity island encoding sphingomyelinase and numerous internalins. Mol. Microbiol. 59 (2006) 415-432
    • (2006) Mol. Microbiol. , vol.59 , pp. 415-432
    • Domínguez-Bernal, G.1
  • 6
    • 0031909356 scopus 로고    scopus 로고
    • Sequence comparison of the chromosomal regions encompassing the internalin C genes (inlC) of Listeria monocytogenes and L. ivanovii
    • Engelbrecht F., Dickneite C., Lampidis R., Götz M., DasGupta U., and Goebel W. Sequence comparison of the chromosomal regions encompassing the internalin C genes (inlC) of Listeria monocytogenes and L. ivanovii. Mol. Gen. Genet. 257 (1998) 186-197
    • (1998) Mol. Gen. Genet. , vol.257 , pp. 186-197
    • Engelbrecht, F.1    Dickneite, C.2    Lampidis, R.3    Götz, M.4    DasGupta, U.5    Goebel, W.6
  • 7
    • 33747172499 scopus 로고    scopus 로고
    • Pattern of gene duplication in the Cotesia congregata Bracovirus
    • Friedman R., and Hughes A.L. Pattern of gene duplication in the Cotesia congregata Bracovirus. Infect. Genet. Evol. 6 (2006) 315-322
    • (2006) Infect. Genet. Evol. , vol.6 , pp. 315-322
    • Friedman, R.1    Hughes, A.L.2
  • 8
  • 9
    • 0842331107 scopus 로고    scopus 로고
    • Birth-and-death evolution of protein-coding regions and concerted evolution of non-coding regions in the multi-component genomes of nanoviruses
    • Hughes A.L. Birth-and-death evolution of protein-coding regions and concerted evolution of non-coding regions in the multi-component genomes of nanoviruses. Mol. Phylogenet. Evol. 30 (2004) 287-294
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 287-294
    • Hughes, A.L.1
  • 10
    • 0142148213 scopus 로고    scopus 로고
    • Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve?
    • Karev G.P., Wolf Y.I., and Koonin E.V. Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve?. Bioinformatics 19 (2003) 1889-1900
    • (2003) Bioinformatics , vol.19 , pp. 1889-1900
    • Karev, G.P.1    Wolf, Y.I.2    Koonin, E.V.3
  • 11
    • 0028080261 scopus 로고
    • The leucine-rich repeat: a versatile binding motif
    • Kobe B., and Deisenhofer J. The leucine-rich repeat: a versatile binding motif. Trends Biochem. Sci. 19 (1994) 415-421
    • (1994) Trends Biochem. Sci. , vol.19 , pp. 415-421
    • Kobe, B.1    Deisenhofer, J.2
  • 12
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5 (2004) 150-163
    • (2004) Brief Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 13
    • 0033256246 scopus 로고    scopus 로고
    • Structure of the lnlB leucine-rich repeats, a domain that triggers host cell invasion by the bacterial pathogen L. monocytogenes
    • Marino M., Braun L., Cossart P., and Ghosh P. Structure of the lnlB leucine-rich repeats, a domain that triggers host cell invasion by the bacterial pathogen L. monocytogenes. Mol. Cell 4 (1999) 1063-1072
    • (1999) Mol. Cell , vol.4 , pp. 1063-1072
    • Marino, M.1    Braun, L.2    Cossart, P.3    Ghosh, P.4
  • 14
    • 0014662980 scopus 로고
    • Gene duplication and nucleotide substitution in evolution
    • Nei M. Gene duplication and nucleotide substitution in evolution. Nature 221 (1969) 40-42
    • (1969) Nature , vol.221 , pp. 40-42
    • Nei, M.1
  • 16
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • Nei M., and Rooney A.P. Concerted and birth-and-death evolution of multigene families. Ann. Rev. Genet. 39 (2005) 121-152
    • (2005) Ann. Rev. Genet. , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 17
    • 0030791307 scopus 로고    scopus 로고
    • Evolution by the birth-and-death process in multigene families
    • Nei M., Gu X., and Sitnikva T. Evolution by the birth-and-death process in multigene families. Proc. Natl. Acad. Sci. U. S. A. 94 (1997) 7799-7806
    • (1997) Proc. Natl. Acad. Sci. U. S. A. , vol.94 , pp. 7799-7806
    • Nei, M.1    Gu, X.2    Sitnikva, T.3
  • 18
    • 33748795802 scopus 로고    scopus 로고
    • Biological applications of the theory of birth-and-death processes
    • Novozhilov A.S., Karev G.P., and Koonin E.V. Biological applications of the theory of birth-and-death processes. Brief Bioinform. 7 (2006) 70-85
    • (2006) Brief Bioinform. , vol.7 , pp. 70-85
    • Novozhilov, A.S.1    Karev, G.P.2    Koonin, E.V.3
  • 20
    • 0023822631 scopus 로고
    • Relationships between gene trees and species trees
    • Pamilo P., and Nei M. Relationships between gene trees and species trees. Mol. Biol. Evol. 5 (1988) 568-583
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 568-583
    • Pamilo, P.1    Nei, M.2
  • 21
    • 4944220181 scopus 로고    scopus 로고
    • Comparative genomics of gene-family size in closely related bacteria
    • Pushker R., Mira A., and Rodríguez F. Comparative genomics of gene-family size in closely related bacteria. Genome Biol. 5 (2004) R27
    • (2004) Genome Biol. , vol.5
    • Pushker, R.1    Mira, A.2    Rodríguez, F.3
  • 22
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 23
    • 4143127619 scopus 로고    scopus 로고
    • Mechanisms underlying the evolution and maintenance of functionally heterogeneous 18S rRNA genes in apicomplexans
    • Rooney A.P. Mechanisms underlying the evolution and maintenance of functionally heterogeneous 18S rRNA genes in apicomplexans. Mol. Biol. Evol. 21 (2004) 1704-1711
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1704-1711
    • Rooney, A.P.1
  • 24
    • 17044401340 scopus 로고    scopus 로고
    • Evolution of a large ribosomal RNA multigene family in filamentous fungi: birth and death of a concerted evolution paradigm
    • Rooney A.P., and Ward T.J. Evolution of a large ribosomal RNA multigene family in filamentous fungi: birth and death of a concerted evolution paradigm. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 5084-5089
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 5084-5089
    • Rooney, A.P.1    Ward, T.J.2
  • 25
    • 23844483956 scopus 로고    scopus 로고
    • LPXTG protein InlJ, a newly identified internalin involved in Listeria monocytogenes virulence
    • Sabet C., Lecuit M., Cabanes D., Cossart P., and Bierne H. LPXTG protein InlJ, a newly identified internalin involved in Listeria monocytogenes virulence. Infect. Immun. 73 (2005) 6912-6922
    • (2005) Infect. Immun. , vol.73 , pp. 6912-6922
    • Sabet, C.1    Lecuit, M.2    Cabanes, D.3    Cossart, P.4    Bierne, H.5
  • 26
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 0022390691 scopus 로고
    • Gene genealogy and variance of interpopulational nucleotide differences
    • Takahata N., and Nei M. Gene genealogy and variance of interpopulational nucleotide differences. Genetics 110 (1985) 325-344
    • (1985) Genetics , vol.110 , pp. 325-344
    • Takahata, N.1    Nei, M.2
  • 28
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 29
    • 34447499138 scopus 로고    scopus 로고
    • Systematic overestimation of gene gain through false diagnosis of gene absence
    • Zhaxybayeva O., Nesbø C.L., and Doolittle W.F. Systematic overestimation of gene gain through false diagnosis of gene absence. Genome Biol. 8 (2007) 402
    • (2007) Genome Biol. , vol.8 , pp. 402
    • Zhaxybayeva, O.1    Nesbø, C.L.2    Doolittle, W.F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.