Genetic diversity analysis of Macaca thibetana based on mitochondrial DNA control region sequences

Mitochondrial DNA

Volumn 19, Issue 5, 2008, Pages 446-452

  Li, Deming ^a   Fan, Longqin ^a   Ran, Jianghong ^a   Yin, Hailin ^a   Wang, Hongxing ^b   Wu, Shaobin ^a   Yue, Bisong ^a  

^a SICHUAN UNIVERSITY   (China)

^b Academy of Medical Sciences   (China)

Author keywords

Conservation; Genetic diversity; Macaca thibetana; Sichuan

Indexed keywords

MITOCHONDRIAL DNA; NUCLEOTIDE;

5' UNTRANSLATED REGION; ARTICLE; CHINA; DNA SEQUENCE; ENDEMIC SPECIES; GENETIC ANALYSIS; GENETIC VARIABILITY; HAPLOTYPE; MACACA; MACACA THIBETANA; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POPULATION GENETICS; PRIORITY JOURNAL; PROMOTER REGION; SPECIES CONSERVATION;

MACACA THIBETANA; PRIMATES;

ANIMALS; BASE COMPOSITION; BASE SEQUENCE; CHINA; DNA PRIMERS; DNA, MITOCHONDRIAL; GENETIC VARIATION; GENETICS, POPULATION; HAPLOTYPES; LOCUS CONTROL REGION; MACACA; MOLECULAR SEQUENCE DATA; PHYLOGENY; SPECIES SPECIFICITY;

EID: 54949097762     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.1080/19401730802449196     Document Type: Article

References (27)

1. Balloux F, Lugon-Moulin NL. 2002. The estimation of population differentiation with microsatellite markers. Mol Ecol 11:155-165.
2. Bandelt H-J, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48.
3. Cassens I, Waerebeek K, Best P, Crespo E, Reyes J, Milinkovitch M. 2003. The phylogeography of dusky dolphins (Lagenorhynchus obscurus): A critical examination of network methods and rooting procedure. Mol Ecol 12:1781-1792.
4. Ewing B, Hillier L, Wendl MC, Green P. 1998. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res 8:175-185.
5. Excoffier L, Laval LG, Schneider S. 2005. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online 1:47-50.
6. Frankham R, Ballou JD, Briscoe DA. 2002. Introduction to conservation genetics. Cambridge: Cambridge University Press.
7. Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-925.
8. Harpending H, Batzer M, Gurven M, Jorde L, Rogers A, Sherry S. 1998. Genetic traces of ancient demography. Proc Natl Acad Sci USA 95:1691-1697.
9. Hedrick PW. 1996. Conservation genetics and molecular techniques: A perspective. In: Wayne T, Smith RK, editors. Molecular genetic approaches in conservation. UK: Oxford University Press. p 459-477.
10. Jiang XL, Wang YX. 1996. Taxonomy and distribution of Tibetan macaque. Zool Res 17:361-369.
11. Kumar S, Tamura K, Nei M. 2004. MEGA 3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163.
12. JH. 1999. The Tibetan macaque society: A field study. Anhui: Anhui University Press. p 8-13.
13. QQ, Zhang YP. 2004. A molecular phylogeny of macaca based on mitochondrial control region sequences. Zool Res 25:385-390.
14. Liu Y, Li JH, Zhao JY. 2006. Sequence variation of mitochondrial DNA control region and population genetic diversity of Tibetan macaques Macaca thibetana in the Huangshan Mountain. Acta Zool Sin 52:724-730.
15. M, Liu ZJ, Gou JX, Ren BP, Pan RL, Su YJ, Funk SM, Wei FW. 2007. Phylogeography and population structure of the golden monkeys (Rhinopithecus roxellana): Inferred from mitochondrial DNA sequences. Am J Primatol 69:1-15.
16. Marmi J, Bertranpetit J, Terradas J, Takenaka O, Domingo-Roura X. 2004. Radiation and phylogeography in the Japanese macaque, Macaca fuscata. Mol Phylogenet Evol 30:676-685.
17. Modolo L, Salzburger W, Martin RD. 2005. Phylogeography of Barbary macaques (M. sylvanus) and the origin of the Gibraltar colony. Proc Natl Acad Sci USA 102:7392-7397.
18. Moritz C. 1994. Applications of mitochondrial DNA analysis in conservation: A critical review. Mol Ecol 3:401-411.
19. Rogers A, Harpending HM. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9:552-569.
20. Rosel PE, Rojas-Bracho L. 1999. Mitochondrial DNA variation in the critically endangered vaquita Phocoena sinus (Norris and Mac-Farland, 1958). Mar Mamm Sci 15:990-1003.
21. Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497.
22. Sambrook J, Russell DW. 2001. Molecular cloning: A laboratory manual. Cold Spring Harbor, NY: Cold Spring Harbor Press.
23. Schneider S, Excoffier L. 1999. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA. Genetics 152:1079-1089.
24. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: Xexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.
25. Wang S. 1998. China red data book of endangered animal (mammalia). Beijing: Science Press. p 48-50.
26. Wang QS. 2000. Macaca thibetana of the Huangshan Mountain region. Big Nat 5:4-5.
27. Winney BJ, Hammond RL, Macasero W, Flores B, Boug A, Biquand V. 2004. Crossing the Red Sea: Phylogeography of the hamadryas baboon, Papio hamadryas hamadryas. Mol Ecol 13:2819-2827.