메뉴 건너뛰기




Volumn 19, Issue 4, 2008, Pages 385-393

Complete mitochondrial DNA sequence of the yellowfin seabream Acanthopagrus latus and a genomic comparison among closely related sparid species

Author keywords

Acanthopagrus latus; Barcode; Mitochondrial genome; Phylogeny; Yellowfin seabream

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOME RNA; TRANSFER RNA;

EID: 54949095129     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.1080/19401730802350998     Document Type: Article
Times cited : (18)

References (34)
  • 1
    • 0029974748 scopus 로고    scopus 로고
    • Model of amino acid substitution in proteins encoded by mitochondrial DNA
    • Adachi J, Hasegawa M. 1996. Model of amino acid substitution in proteins encoded by mitochondrial DNA. J Mol Evol 42:459-468.
    • (1996) J Mol Evol , vol.42 , pp. 459-468
    • Adachi, J.1    Hasegawa, M.2
  • 2
    • 0000576925 scopus 로고
    • A chromosome study of eight Mediterranean species of Sparidae (Pisces, Perciformes)
    • Cataudella S, Perin RP, Sola L. 1980. A chromosome study of eight Mediterranean species of Sparidae (Pisces, Perciformes). Genetica 54:155-159.
    • (1980) Genetica , vol.54 , pp. 155-159
    • Cataudella, S.1    Perin, R.P.2    Sola, L.3
  • 3
    • 0029589302 scopus 로고
    • Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae, Teleostei): Inconsistent implications from morphology, nuclear and mitochondrial genomes
    • Chow S, Kishino H. 1995. Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae, Teleostei): Inconsistent implications from morphology, nuclear and mitochondrial genomes. J Mol Evol 41:741-748.
    • (1995) J Mol Evol , vol.41 , pp. 741-748
    • Chow, S.1    Kishino, H.2
  • 4
    • 0035754038 scopus 로고    scopus 로고
    • The molecular phylogeny of the Sparidae (Pisces, Perciformes) based on two satellite DNA families
    • De La Herrán R, Ruiz RejÓn C, Ruiz RejÓn M, Garrido-Ramos A. 2001. The molecular phylogeny of the Sparidae (Pisces, Perciformes) based on two satellite DNA families. Heredity 87:691-697.
    • (2001) Heredity , vol.87 , pp. 691-697
    • De La Herrán, R.1    Ruiz RejÓn, C.2    Ruiz RejÓn, M.3    Garrido-Ramos, A.4
  • 5
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C. 1996. SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548.
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 6
    • 0033949284 scopus 로고    scopus 로고
    • Multiple recurrent evolution of trophic types in northeastern Atlantic and Mediterranean seabreams (Sparidae, Percoidei)
    • Hanel R, Sturmbauer C. 2000. Multiple recurrent evolution of trophic types in northeastern Atlantic and Mediterranean seabreams (Sparidae, Percoidei). J Mol Evol 50:276-283.
    • (2000) J Mol Evol , vol.50 , pp. 276-283
    • Hanel, R.1    Sturmbauer, C.2
  • 7
    • 0022376704 scopus 로고
    • Dating of the human Cape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano TA. 1985. Dating of the human Cape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22:160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.A.3
  • 8
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 2:13-35.
    • (1985) Mol Biol Evol , vol.2 , pp. 13-35
    • Ikemura, T.1
  • 9
    • 0000307861 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese anchovy Engraulis japonicus
    • Inoue JG, Miya M, Tsukamoto K, Nishida M. 2001. Complete mitochondrial DNA sequence of the Japanese anchovy Engraulis japonicus. Fish Sci 67:828-835.
    • (2001) Fish Sci , vol.67 , pp. 828-835
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 10
    • 34548136104 scopus 로고    scopus 로고
    • Comparative mitochondrial genomics of snakes: Extraordinary substitution rate dynamics and functionality of the duplicate control region
    • Jiang ZJ, Castoe TA, Austin CC, Burbrink FT, Herron MD, McGuire JA, et al. 2007. Comparative mitochondrial genomics of snakes: Extraordinary substitution rate dynamics and functionality of the duplicate control region. BMC Evol Biol 7:123-137.
    • (2007) BMC Evol Biol , vol.7 , pp. 123-137
    • Jiang, Z.J.1    Castoe, T.A.2    Austin, C.C.3    Burbrink, F.T.4    Herron, M.D.5    McGuire, J.A.6
  • 11
    • 34447261138 scopus 로고    scopus 로고
    • Phylogenetic relationships in genus Niviventer (Rodentia: Muridae) in China inferred from complete mitochondrial cytochrome b gene
    • Jing MD, Yu HT, Wu SH, Wang W, Zheng XG. 2007. Phylogenetic relationships in genus Niviventer (Rodentia: Muridae) in China inferred from complete mitochondrial cytochrome b gene. Mol Phylogenet Evol 44:521-529.
    • (2007) Mol Phylogenet Evol , vol.44 , pp. 521-529
    • Jing, M.D.1    Yu, H.T.2    Wu, S.H.3    Wang, W.4    Zheng, X.G.5
  • 12
    • 33847205376 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the Korean soft-shelled turtle Pelodiscus sinensis (Testudines, Trionychidae)
    • Jung SO, Lee YM, Kartavtsev Y, Park IS, Kim DS, Lee JS. 2006. The complete mitochondrial genome of the Korean soft-shelled turtle Pelodiscus sinensis (Testudines, Trionychidae). DNA Seq 17:471-483.
    • (2006) DNA Seq , vol.17 , pp. 471-483
    • Jung, S.O.1    Lee, Y.M.2    Kartavtsev, Y.3    Park, I.S.4    Kim, D.S.5    Lee, J.S.6
  • 13
    • 34249334313 scopus 로고    scopus 로고
    • Complete mitochondrial genome of the bullhead torrent catfish, Liobagrus obesus (Siluriformes, Amblycipididae): Genome description and phylogenetic considerations inferred from the Cyt b and 16S rRNA genes
    • Kartavtsev YP, Jung SQ, Lee YM, Byeon H, Lee JS. 2007. Complete mitochondrial genome of the bullhead torrent catfish, Liobagrus obesus (Siluriformes, Amblycipididae): Genome description and phylogenetic considerations inferred from the Cyt b and 16S rRNA genes. Gene 396:13-27.
    • (2007) Gene , vol.396 , pp. 13-27
    • Kartavtsev, Y.P.1    Jung, S.Q.2    Lee, Y.M.3    Byeon, H.4    Lee, J.S.5
  • 14
    • 0035539901 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of Aulopus japonicus (Teleostei: Aulopiformes), a basal Eurypterygii: Longer DNA sequences and higher-level relationships
    • Kawaguchi A, Miya M, Nishida M. 2001. Complete mitochondrial DNA sequence of Aulopus japonicus (Teleostei: Aulopiformes), a basal Eurypterygii: Longer DNA sequences and higher-level relationships. Ichthyol Res 48:213-223.
    • (2001) Ichthyol Res , vol.48 , pp. 213-223
    • Kawaguchi, A.1    Miya, M.2    Nishida, M.3
  • 15
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 16
    • 35148890085 scopus 로고    scopus 로고
    • Polymorphism study of the mitochondrial DNA D-loop gene sequences from Sparus latus
    • Liu HY, Jiang SG, Su TF, Gong SY. 2004. Polymorphism study of the mitochondrial DNA D-loop gene sequences from Sparus latus. J Fish China 28:371-374.
    • (2004) J Fish China , vol.28 , pp. 371-374
    • Liu, H.Y.1    Jiang, S.G.2    Su, T.F.3    Gong, S.Y.4
  • 17
    • 0030854739 scopus 로고    scopus 로고
    • tRNA scan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. 1997. tRNA scan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 18
    • 1542351350 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Atlantic bluefin tuna Thunnus thynnus
    • Manchado M, Catanese G, Infante C. 2004. Complete mitochondrial DNA sequence of the Atlantic bluefin tuna Thunnus thynnus. Fish Sci 70:68-73.
    • (2004) Fish Sci , vol.70 , pp. 68-73
    • Manchado, M.1    Catanese, G.2    Infante, C.3
  • 19
    • 0034749003 scopus 로고    scopus 로고
    • Mitogenomic exploration of higher teleostean phylogenies: A case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences
    • Miya M, Kawaguchi A, Nishida M. 2001. Mitogenomic exploration of higher teleostean phylogenies: A case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol Biol Evol 18:1993-2009.
    • (2001) Mol Biol Evol , vol.18 , pp. 1993-2009
    • Miya, M.1    Kawaguchi, A.2    Nishida, M.3
  • 20
    • 0037215848 scopus 로고    scopus 로고
    • Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences
    • Miya M, Takeshima H, Endo H, Ishiguro NB, Inoue JG, Mukai T, et al. 2003. Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol 26:121-138.
    • (2003) Mol Phylogenet Evol , vol.26 , pp. 121-138
    • Miya, M.1    Takeshima, H.2    Endo, H.3    Ishiguro, N.B.4    Inoue, J.G.5    Mukai, T.6
  • 21
    • 3042541180 scopus 로고    scopus 로고
    • A phylogeny of the fish family Sparidae (porgies) inferred from mitochondrial sequence data
    • Orrell TM, Carpenter KE. 2004. A phylogeny of the fish family Sparidae (porgies) inferred from mitochondrial sequence data. Mol Phylogenet Evol 32:425-434.
    • (2004) Mol Phylogenet Evol , vol.32 , pp. 425-434
    • Orrell, T.M.1    Carpenter, K.E.2
  • 22
    • 0037102539 scopus 로고    scopus 로고
    • A phylogenetic and biogeographic analysis of the Sparidae (Perciformes: Percoidei) based on cytochrome b sequences
    • Orrell TM, Carpenter KE, Musick JA, Graves JE. 2002. A phylogenetic and biogeographic analysis of the Sparidae (Perciformes: Percoidei) based on cytochrome b sequences. Copeia 3:618-631.
    • (2002) Copeia , vol.3 , pp. 618-631
    • Orrell, T.M.1    Carpenter, K.E.2    Musick, J.A.3    Graves, J.E.4
  • 23
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page RDM. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 24
    • 34548488235 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Scutigerella causeyae (Myriapoda: Symphyla) and the phylogenetic position of Symphyla
    • Podsiadlowski L, Kohlhagen H, Koch M. 2007. The complete mitochondrial genome of Scutigerella causeyae (Myriapoda: Symphyla) and the phylogenetic position of Symphyla. Mol Phylogenet Evol 45:251-260.
    • (2007) Mol Phylogenet Evol , vol.45 , pp. 251-260
    • Podsiadlowski, L.1    Kohlhagen, H.2    Koch, M.3
  • 25
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, von Haeseler A. 2002. TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 26
    • 0002527415 scopus 로고    scopus 로고
    • Differences between Pagrus major and Pagrus auratus through mainly mtDNA control region analysis
    • Tabata K, Taniguchi N. 2000. Differences between Pagrus major and Pagrus auratus through mainly mtDNA control region analysis. Fish Sci 66:9-18.
    • (2000) Fish Sci , vol.66 , pp. 9-18
    • Tabata, K.1    Taniguchi, N.2
  • 27
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 28
    • 34548539624 scopus 로고    scopus 로고
    • Cytochrome b sequence analysis reveals differential molecular evolution in African molerats of the chromosomally hyperdiverse genus Fukomys (Bathyergidae, Rodentia) from the Zambezian region
    • Van Daele P, Verheyen E, Brunain M, Adriaens D. 2007. Cytochrome b sequence analysis reveals differential molecular evolution in African molerats of the chromosomally hyperdiverse genus Fukomys (Bathyergidae, Rodentia) from the Zambezian region. Mol Phylogenet Evol 45:142-157.
    • (2007) Mol Phylogenet Evol , vol.45 , pp. 142-157
    • Van Daele, P.1    Verheyen, E.2    Brunain, M.3    Adriaens, D.4
  • 29
    • 33845495151 scopus 로고    scopus 로고
    • Analysis of the genetic diversity and the phylogenetic evolution of Chinese sheep based on Cyt b gene sequences
    • Wand X, Ma YH, Chen H. 2006. Analysis of the genetic diversity and the phylogenetic evolution of Chinese sheep based on Cyt b gene sequences. Acta Genet Sin 33:1081-1086.
    • (2006) Acta Genet Sin , vol.33 , pp. 1081-1086
    • Wand, X.1    Ma, Y.H.2    Chen, H.3
  • 30
    • 33646862841 scopus 로고    scopus 로고
    • Primer note: Characterization of 11 polymorphic microsatellite loci in the yellowfin seabream Acanthopagrus latus
    • Xia JH, Xia KF, Jiang SG. 2006. Primer note: Characterization of 11 polymorphic microsatellite loci in the yellowfin seabream Acanthopagrus latus. Mol Ecol Notes 6:484-486.
    • (2006) Mol Ecol Notes , vol.6 , pp. 484-486
    • Xia, J.H.1    Xia, K.F.2    Jiang, S.G.3
  • 31
    • 35148839855 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence and gene organization in the Parargyrops edita
    • Xia JH, Xia KF, Gong JB, Jiang SG. 2007. Complete mitochondrial DNA sequence and gene organization in the Parargyrops edita. Fish Sci 73:1042-1049.
    • (2007) Fish Sci , vol.73 , pp. 1042-1049
    • Xia, J.H.1    Xia, K.F.2    Gong, J.B.3    Jiang, S.G.4
  • 32
    • 35148892019 scopus 로고    scopus 로고
    • Study on genetic relationships of Sparidae by RAPD
    • Yang HR, Jiang SG. 2006. Study on genetic relationships of Sparidae by RAPD. J Fish China 30:469-474.
    • (2006) J Fish China , vol.30 , pp. 469-474
    • Yang, H.R.1    Jiang, S.G.2
  • 33
    • 33646867140 scopus 로고    scopus 로고
    • The population structure of Parargyrops edita Tanaka in South Fujian and Taiwan bank fishing ground
    • Ye SZ, Xiao FS, Chen WY. 2004. The population structure of Parargyrops edita Tanaka in South Fujian and Taiwan bank fishing ground. J Fujian Fish 1:23-30.
    • (2004) J Fujian Fish , vol.1 , pp. 23-30
    • Ye, S.Z.1    Xiao, F.S.2    Chen, W.Y.3
  • 34
    • 34249739866 scopus 로고    scopus 로고
    • Comparative study of mtDNA 16S rRNA gene fragments among six Lutjanus fishes
    • Zhou FL, Jiang SG, Su TF, Lu JL. 2004. Comparative study of mtDNA 16S rRNA gene fragments among six Lutjanus fishes. J Fish Sci China 11:99-103.
    • (2004) J Fish Sci China , vol.11 , pp. 99-103
    • Zhou, F.L.1    Jiang, S.G.2    Su, T.F.3    Lu, J.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.