-
1
-
-
0036782706
-
Transcription factors as targets for cancer therapy
-
10.1038/nrc906 12360277
-
Darnell JE Jr Transcription factors as targets for cancer therapy Nat Rev Cancer 2002, 2:740-749. 10.1038/nrc906 12360277
-
(2002)
Nat Rev Cancer
, vol.2
, pp. 740-749
-
-
Darnell Jr., J.E.1
-
2
-
-
0034680102
-
Molecular portraits of human breast tumours
-
10.1038/35021093 10963602
-
Perou CM Sorlie T Eisen MB Rijn van de M Jeffrey SS Rees CA Pollack JR Ross DT Johnsen H Akslen LA Fluge O Pergamenschikov A Williams C Zhu SX Lonning PE Borresen-Dale AL Brown PO Botstein D Molecular portraits of human breast tumours Nature 2000, 406:747-752. 10.1038/35021093 10963602
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
Sorlie, T.2
Eisen, M.B.3
Rijn, M.4
Jeffrey, S.S.5
Rees, C.A.6
Pollack, J.R.7
Ross, D.T.8
Johnsen, H.9
Akslen, L.A.10
Fluge, O.11
Pergamenschikov, A.12
Williams, C.13
Zhu, S.X.14
Lonning, P.E.15
Borresen-Dale, A.L.16
Brown, P.O.17
Botstein, D.18
-
3
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
58566 11553815 10.1073/pnas.191367098
-
Sorlie T Perou CM Tibshirani R Aas T Geisler S Johnsen H Hastie T Eisen MB Rijn van de M Jeffrey SS Thorsen T Quist H Matese JC Brown PO Botstein D Eystein Lonning P Borresen-Dale AL Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications Proc Natl Acad Sci USA 2001, 98:10869-10874. 58566 11553815 10.1073/pnas.191367098
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.B.8
Rijn, M.9
Jeffrey, S.S.10
Thorsen, T.11
Quist, H.12
Matese, J.C.13
Brown, P.O.14
Botstein, D.15
Eystein Lonning, P.16
Borresen-Dale, A.L.17
-
4
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
10.1038/415530a
-
van't Veer LJ Dai H Vijver van de MJ He YD Hart AA Mao M Peterse HL Kooy van der K Marton MJ Witteveen AT Schreiber GJ Kerkhoven RM Roberts C Linsley PS Bernards R Friend SH Gene expression profiling predicts clinical outcome of breast cancer Nature 2002, 415:530-536. 10.1038/ 415530a 11823860
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.J.1
Dai, H.2
Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
Peterse, H.L.7
Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
Schreiber, G.J.11
Kerkhoven, R.M.12
Roberts, C.13
Linsley, P.S.14
Bernards, R.15
Friend, S.H.16
-
5
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
10.1056/NEJMoa021967 12490681
-
Vijver van de MJ He YD van't Veer LJ Dai H Hart AA Voskuil DW Schreiber GJ Peterse JL Roberts C Marton MJ Parrish M Atsma D Witteveen A Glas A Delahaye L Velde van der T Bartelink H Rodenhuis S Rutgers ET Friend SH Bernards R A gene-expression signature as a predictor of survival in breast cancer N Engl J Med 2002, 347:1999-2009. 10.1056/NEJMoa021967 12490681
-
(2002)
N Engl J Med
, vol.347
, pp. 1999-2009
-
-
Vijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
Schreiber, G.J.7
Peterse, J.L.8
Roberts, C.9
Marton, M.J.10
Parrish, M.11
Atsma, D.12
Witteveen, A.13
Glas, A.14
Delahaye, L.15
Velde, T.16
Bartelink, H.17
Rodenhuis, S.18
Rutgers, E.T.19
Friend, S.H.20
Bernards, R.21
more..
-
6
-
-
13844310310
-
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
Wang Y Klijn JG Zhang Y Sieuwerts AM Look MP Yang F Talantov D Timmermans M Meijer-van Gelder ME Yu J Jatkoe T Berns EM Atkins D Foekens JA Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer Lancet 2005, 365:671-679. 15721472
-
(2005)
Lancet
, vol.365
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.G.2
Zhang, Y.3
Sieuwerts, A.M.4
Look, M.P.5
Yang, F.6
Talantov, D.7
Timmermans, M.8
Meijer-van Gelder, M.E.9
Yu, J.10
Jatkoe, T.11
Berns, E.M.12
Atkins, D.13
Foekens, J.A.14
-
7
-
-
26444546442
-
An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival
-
1197273 16141321 10.1073/pnas.0506230102
-
Miller LD Smeds J George J Vega VB Vergara L Ploner A Pawitan Y Hall P Klaar S Liu ET Bergh J An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival Proc Natl Acad Sci USA 2005, 102:13550-13555. 1197273 16141321 10.1073/pnas.0506230102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13550-13555
-
-
Miller, L.D.1
Smeds, J.2
George, J.3
Vega, V.B.4
Vergara, L.5
Ploner, A.6
Pawitan, Y.7
Hall, P.8
Klaar, S.9
Liu, E.T.10
Bergh, J.11
-
8
-
-
20144386127
-
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival
-
548329 15701700 10.1073/pnas.0409462102
-
Chang HY Nuyten DS Sneddon JB Hastie T Tibshirani R Sorlie T Dai H He YD van't Veer LJ Bartelink H Rijn van de M Brown PO Vijver van de MJ Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival Proc Natl Acad Sci USA 2005, 102:3738-3743. 548329 15701700 10.1073/pnas.0409462102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 3738-3743
-
-
Chang, H.Y.1
Nuyten, D.S.2
Sneddon, J.B.3
Hastie, T.4
Tibshirani, R.5
Sorlie, T.6
Dai, H.7
He, Y.D.8
van't Veer, L.J.9
Bartelink, H.10
Rijn, M.11
Brown, P.O.12
Vijver, M.J.13
-
9
-
-
0035135420
-
Regulatory element detection using correlation with expression
-
10.1038/84792 11175784
-
Bussemaker HJ Li H Siggia ED Regulatory element detection using correlation with expression Nat Genet 2001, 27:167-171. 10.1038/84792 11175784
-
(2001)
Nat Genet
, vol.27
, pp. 167-171
-
-
Bussemaker, H.J.1
Li, H.2
Siggia, E.D.3
-
10
-
-
0037453009
-
Integrating regulatory motif discovery and genome-wide expression analysis
-
152294 12626739 10.1073/pnas.0630591100
-
Conlon EM Liu XS Lieb JD Liu JS Integrating regulatory motif discovery and genome-wide expression analysis Proc Natl Acad Sci USA 2003, 100:3339-3344. 152294 12626739 10.1073/pnas.0630591100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 3339-3344
-
-
Conlon, E.M.1
Liu, X.S.2
Lieb, J.D.3
Liu, J.S.4
-
11
-
-
9244257298
-
Interacting models of cooperative gene regulation
-
528978 15534222 10.1073/pnas.0407365101
-
Das D Banerjee N Zhang MQ Interacting models of cooperative gene regulation Proc Natl Acad Sci USA 2004, 101:16234-16239. 528978 15534222 10.1073/pnas.0407365101
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 16234-16239
-
-
Das, D.1
Banerjee, N.2
Zhang, M.Q.3
-
12
-
-
1942453302
-
Predicting gene expression from sequence
-
10.1016/S0092-8674(04)00304-6 15084257
-
Beer MA Tavazoie S Predicting gene expression from sequence Cell 2004, 117:185-198. 10.1016/S0092-8674(04)00304-6 15084257
-
(2004)
Cell
, vol.117
, pp. 185-198
-
-
Beer, M.A.1
Tavazoie, S.2
-
13
-
-
33745440791
-
Adaptively inferring human transcriptional subnetworks
-
1681499 16760900 10.1038/msb4100067
-
Das D Nahle Z Zhang MQ Adaptively inferring human transcriptional subnetworks Mol Syst Biol 2006, 2:0029. 1681499 16760900 10.1038/ msb4100067
-
(2006)
Mol Syst Biol
, vol.2
, pp. 0029
-
-
Das, D.1
Nahle, Z.2
Zhang, M.Q.3
-
14
-
-
33646580422
-
DNA motifs in human and mouse proximal promoters predict tissue-specific expression
-
1458868 16606849 10.1073/pnas.0508169103
-
Smith AD Sumazin P Xuan Z Zhang MQ DNA motifs in human and mouse proximal promoters predict tissue-specific expression Proc Natl Acad Sci USA 2006, 103:6275-6280. 1458868 16606849 10.1073/pnas.0508169103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6275-6280
-
-
Smith, A.D.1
Sumazin, P.2
Xuan, Z.3
Zhang, M.Q.4
-
15
-
-
34548444625
-
Elucidating the altered transcriptional programs in breast cancer using independent component analysis
-
1950343 17708679 10.1371/journal.pcbi.0030161
-
Teschendorff AE Journee M Absil PA Sepulchre R Caldas C Elucidating the altered transcriptional programs in breast cancer using independent component analysis PLoS Comput Biol 2007, 3:e161. 1950343 17708679 10.1371/journal.pcbi.0030161
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Teschendorff, A.E.1
Journee, M.2
Absil, P.A.3
Sepulchre, R.4
Caldas, C.5
-
16
-
-
39549091486
-
Transcriptional networks inferred from molecular signatures of breast cancer
-
2312359 18187569 10.2353/ajpath.2008.061079
-
Tongbai R Idelman G Nordgard SH Cui W Jacobs JL Haggerty CM Chanock SJ Borresen-Dale AL Livingston G Shaunessy P Chiang CH Kristensen VN Bilke S Gardner K Transcriptional networks inferred from molecular signatures of breast cancer Am J Pathol 2008, 172:495-509. 2312359 18187569 10.2353/ ajpath.2008.061079
-
(2008)
Am J Pathol
, vol.172
, pp. 495-509
-
-
Tongbai, R.1
Idelman, G.2
Nordgard, S.H.3
Cui, W.4
Jacobs, J.L.5
Haggerty, C.M.6
Chanock, S.J.7
Borresen-Dale, A.L.8
Livingston, G.9
Shaunessy, P.10
Chiang, C.H.11
Kristensen, V.N.12
Bilke, S.13
Gardner, K.14
-
17
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
-
1347505 16381825 10.1093/nar/gkj143
-
Matys V Kel-Margoulis OV Fricke E Liebich I Land S Barre-Dirrie A Reuter I Chekmenev D Krull M Hornischer K Voss N Stegmaier P Lewicki-Potapov B Saxel H Kel AE Wingender E TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes Nucleic Acids Res 2006, 34:D108-D110. 1347505 16381825 10.1093/nar/gkj143
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
Liebich, I.4
Land, S.5
Barre-Dirrie, A.6
Reuter, I.7
Chekmenev, D.8
Krull, M.9
Hornischer, K.10
Voss, N.11
Stegmaier, P.12
Lewicki-Potapov, B.13
Saxel, H.14
Kel, A.E.15
Wingender, E.16
-
18
-
-
33644875782
-
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles
-
1347477 16381983 10.1093/nar/gkj115
-
Vlieghe D Sandelin A De Bleser PJ Vleminckx K Wasserman WW van Roy F Lenhard B A new generation of JASPAR, the open-access repository for transcription factor binding site profiles Nucleic Acids Res 2006, 34:D95-D97. 1347477 16381983 10.1093/nar/gkj115
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Vlieghe, D.1
Sandelin, A.2
De Bleser, P.J.3
Vleminckx, K.4
Wasserman, W.W.5
van Roy, F.6
Lenhard, B.7
-
19
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
10.1089/106652700750050961 11108481
-
Friedman N Linial M Nachman I Pe'er D Using Bayesian networks to analyze expression data J Comput Biol 2000, 7:601-620. 10.1089/ 106652700750050961 11108481
-
(2000)
J Comput Biol
, vol.7
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'er, D.4
-
20
-
-
21144455401
-
Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays
-
1149502 15951424 10.1073/pnas.0502674102
-
Pan KH Lih CJ Cohen SN Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays Proc Natl Acad Sci USA 2005, 102:8961-8965. 1149502 15951424 10.1073/pnas.0502674102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 8961-8965
-
-
Pan, K.H.1
Lih, C.J.2
Cohen, S.N.3
-
21
-
-
33645381936
-
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
-
10.1038/ng1760 16518401
-
Loh YH Wu Q Chew JL Vega VB Zhang W Chen X Bourque G George J Leong B Liu J Wong KY Sung KW Lee CW Zhao XD Chiu KP Lipovich L Kuznetsov VA Robson P Stanton LW Wei CL Ruan Y Lim B Ng HH The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells Nat Genet 2006, 38:431-440. 10.1038/ng1760 16518401
-
(2006)
Nat Genet
, vol.38
, pp. 431-440
-
-
Loh, Y.H.1
Wu, Q.2
Chew, J.L.3
Vega, V.B.4
Zhang, W.5
Chen, X.6
Bourque, G.7
George, J.8
Leong, B.9
Liu, J.10
Wong, K.Y.11
Sung, K.W.12
Lee, C.W.13
Zhao, X.D.14
Chiu, K.P.15
Lipovich, L.16
Kuznetsov, V.A.17
Robson, P.18
Stanton, L.W.19
Wei, C.L.20
Ruan, Y.21
Lim, B.22
Ng, H.H.23
more..
-
22
-
-
30344439849
-
Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity
-
10.1016/j.cell.2005.10.042 16413481
-
Hallikas O Palin K Sinjushina N Rautiainen R Partanen J Ukkonen E Taipale J Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity Cell 2006, 124:47-59. 10.1016/j.cell.2005.10.042 16413481
-
(2006)
Cell
, vol.124
, pp. 47-59
-
-
Hallikas, O.1
Palin, K.2
Sinjushina, N.3
Rautiainen, R.4
Partanen, J.5
Ukkonen, E.6
Taipale, J.7
-
23
-
-
0042424602
-
Statistical significance for genomewide studies
-
170937 12883005 10.1073/pnas.1530509100
-
Storey JD Tibshirani R Statistical significance for genomewide studies Proc Natl Acad Sci USA 2003, 100:9440-9445. 170937 12883005 10.1073/ pnas.1530509100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
24
-
-
0000336139
-
Regression Models and Life-tables
-
Cox DR Regression Models and Life-tables J R Stat Soc Ser B 1972, 34:187-220.
-
(1972)
J R Stat Soc Ser B
, vol.34
, pp. 187-220
-
-
Cox, D.R.1
-
25
-
-
0026072872
-
Pathological prognostic factors in breast cancer. I. The value of histological grade in breast cancer: Experience from a large study with long-term follow-up
-
10.1111/j.1365-2559.1991.tb00229.x 1757079
-
Elston CW Ellis IO Pathological prognostic factors in breast cancer. I. The value of histological grade in breast cancer: Experience from a large study with long-term follow-up Histopathology 1991, 19:403-410. 10.1111/j.1365-2559.1991.tb00229.x 1757079
-
(1991)
Histopathology
, vol.19
, pp. 403-410
-
-
Elston, C.W.1
Ellis, I.O.2
-
26
-
-
0038137601
-
Gene expression profiles of human breast cancer progression
-
156311 12714683 10.1073/pnas.0931261100
-
Ma XJ Salunga R Tuggle JT Gaudet J Enright E McQuary P Payette T Pistone M Stecker K Zhang BM Zhou YX Varnholt H Smith B Gadd M Chatfield E Kessler J Baer TM Erlander MG Sgroi DC Gene expression profiles of human breast cancer progression Proc Natl Acad Sci USA 2003, 100:5974-5979. 156311 12714683 10.1073/pnas.0931261100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 5974-5979
-
-
Ma, X.J.1
Salunga, R.2
Tuggle, J.T.3
Gaudet, J.4
Enright, E.5
McQuary, P.6
Payette, T.7
Pistone, M.8
Stecker, K.9
Zhang, B.M.10
Zhou, Y.X.11
Varnholt, H.12
Smith, B.13
Gadd, M.14
Chatfield, E.15
Kessler, J.16
Baer, T.M.17
Erlander, M.G.18
Sgroi, D.C.19
-
27
-
-
33144462268
-
Gene expression profiling in breast cancer: Understanding the molecular basis of histologic grade to improve prognosis
-
16478745
-
Sotiriou C Wirapati P Loi S Harris A Fox S Smeds J Nordgren H Farmer P Praz V Haibe-Kains B Desmedt C Larsimont D Cardoso F Peterse H Nuyten D Buyse M Vijver Van de MJ Bergh J Piccart M Delorenzi M Gene expression profiling in breast cancer: Understanding the molecular basis of histologic grade to improve prognosis J Natl Cancer Inst 2006, 98:262-272. 16478745
-
(2006)
J Natl Cancer Inst
, vol.98
, pp. 262-272
-
-
Sotiriou, C.1
Wirapati, P.2
Loi, S.3
Harris, A.4
Fox, S.5
Smeds, J.6
Nordgren, H.7
Farmer, P.8
Praz, V.9
Haibe-Kains, B.10
Desmedt, C.11
Larsimont, D.12
Cardoso, F.13
Peterse, H.14
Nuyten, D.15
Buyse, M.16
Vijver, M.J.17
Bergh, J.18
Piccart, M.19
Delorenzi, M.20
more..
-
28
-
-
34447632167
-
Gene expression profiling spares early breast cancer patients from adjuvant therapy: Derived and validated in two population-based cohorts
-
1410752 16280042 10.1186/bcr1325
-
Pawitan Y Bjohle J Amler L Borg A Egyhazi S Hall P Han X Holmberg L Huang F Klaar S Liu ET Miller LD Nordgren H Ploner A Sandelin K Shaw PM Smeds J Skoog L Wedren S Bergh J Gene expression profiling spares early breast cancer patients from adjuvant therapy: Derived and validated in two population-based cohorts Breast Cancer Res 2005, 7:R953. R964 1410752 16280042 10.1186/bcr1325
-
(2005)
Breast Cancer Res
, vol.7
-
-
Pawitan, Y.1
Bjohle, J.2
Amler, L.3
Borg, A.4
Egyhazi, S.5
Hall, P.6
Han, X.7
Holmberg, L.8
Huang, F.9
Klaar, S.10
Liu, E.T.11
Miller, L.D.12
Nordgren, H.13
Ploner, A.14
Sandelin, K.15
Shaw, P.M.16
Smeds, J.17
Skoog, L.18
Wedren, S.19
Bergh, J.20
more..
-
29
-
-
0035515347
-
The ETS-domain transcription factor family
-
10.1038/35099076 11715049
-
Sharrocks AD The ETS-domain transcription factor family Nat Rev Mol Cell Biol 2001, 2:827-837. 10.1038/35099076 11715049
-
(2001)
Nat Rev Mol Cell Biol
, vol.2
, pp. 827-837
-
-
Sharrocks, A.D.1
-
30
-
-
33845884027
-
Integrative molecular concept modeling of prostate cancer progression
-
10.1038/ng1935 17173048
-
Tomlins SA Mehra R Rhodes DR Cao X Wang L Dhanasekaran SM Kalyana-Sundaram S Wei JT Rubin MA Pienta KJ Shah RB Chinnaiyan AM Integrative molecular concept modeling of prostate cancer progression Nat Genet 2007, 39:41-51. 10.1038/ng1935 17173048
-
(2007)
Nat Genet
, vol.39
, pp. 41-51
-
-
Tomlins, S.A.1
Mehra, R.2
Rhodes, D.R.3
Cao, X.4
Wang, L.5
Dhanasekaran, S.M.6
Kalyana-Sundaram, S.7
Wei, J.T.8
Rubin, M.A.9
Pienta, K.J.10
Shah, R.B.11
Chinnaiyan, A.M.12
-
31
-
-
0036371956
-
Sibling rivalry in the E2F family
-
10.1038/nrm714 11823794
-
Trimarchi JM Lees JA Sibling rivalry in the E2F family Nat Rev Mol Cell Biol 2002, 3:11-20. 10.1038/nrm714 11823794
-
(2002)
Nat Rev Mol Cell Biol
, vol.3
, pp. 11-20
-
-
Trimarchi, J.M.1
Lees, J.A.2
-
32
-
-
33645011201
-
Nuclear control of respiratory gene expression in mammalian cells
-
10.1002/jcb.20743 16329141
-
Scarpulla RC Nuclear control of respiratory gene expression in mammalian cells J Cell Biochem 2006, 97:673-683. 10.1002/jcb.20743 16329141
-
(2006)
J Cell Biochem
, vol.97
, pp. 673-683
-
-
Scarpulla, R.C.1
-
33
-
-
8644281106
-
A common set of gene regulatory networks links metabolism and growth inhibition
-
10.1016/j.molcel.2004.09.037 15525513
-
Cam H Balciunaite E Blais A Spektor A Scarpulla RC Young R Kluger Y Dynlacht BD A common set of gene regulatory networks links metabolism and growth inhibition Mol Cell 2004, 16:399-411. 10.1016/ j.molcel.2004.09.037 15525513
-
(2004)
Mol Cell
, vol.16
, pp. 399-411
-
-
Cam, H.1
Balciunaite, E.2
Blais, A.3
Spektor, A.4
Scarpulla, R.C.5
Young, R.6
Kluger, Y.7
Dynlacht, B.D.8
-
34
-
-
10044254753
-
E2Fs link the control of G1/S and G2/M transcription
-
533046 15510213 10.1038/sj.emboj.7600459
-
Zhu W Giangrande PH Nevins JR E2Fs link the control of G1/S and G2/M transcription EMBO J 2004, 23:4615-4626. 533046 15510213 10.1038/ sj.emboj.7600459
-
(2004)
EMBO J
, vol.23
, pp. 4615-4626
-
-
Zhu, W.1
Giangrande, P.H.2
Nevins, J.R.3
-
35
-
-
33750442923
-
Genome-wide analysis of estrogen receptor binding sites
-
10.1038/ng1901 17013392
-
Carroll JS Meyer CA Song J Li W Geistlinger TR Eeckhoute J Brodsky AS Keeton EK Fertuck KC Hall GF Wang Q Bekiranov S Sementchenko V Fox EA Silver PA Gingeras TR Liu XS Brown M Carroll JS Liu XS Brodsky AS Li W Meyer CA Szary AJ Eeckhoute J Shao W Hestermann EV Geistlinger TR Fox EA Silver PA Brown M Genome-wide analysis of estrogen receptor binding sites Nat Genet 2006, 38:1289-1297. 10.1038/ng1901 17013392
-
(2006)
Nat Genet
, vol.38
, pp. 1289-1297
-
-
Carroll, J.S.1
Meyer, C.A.2
Song, J.3
Li, W.4
Geistlinger, T.R.5
Eeckhoute, J.6
Brodsky, A.S.7
Keeton, E.K.8
Fertuck, K.C.9
Hall, G.F.10
Wang, Q.11
Bekiranov, S.12
Sementchenko, V.13
Fox, E.A.14
Silver, P.A.15
Gingeras, T.R.16
Liu, X.S.17
Brown, M.18
Carroll, J.S.19
Liu, X.S.20
Brodsky, A.S.21
Li, W.22
Meyer, C.A.23
Szary, A.J.24
Eeckhoute, J.25
Shao, W.26
Hestermann, E.V.27
Geistlinger, T.R.28
Fox, E.A.29
Silver, P.A.30
Brown, M.31
more..
-
36
-
-
30344478870
-
A global map of p53 transcription-factor binding sites in the human genome
-
10.1016/j.cell.2005.10.043 16413492
-
Wei CL Wu Q Vega VB Chiu KP Ng P Zhang T Shahab A Yong HC Fu Y Weng Z Liu J Zhao XD Chew JL Lee YL Kuznetsov VA Sung WK Miller LD Lim B Liu ET Yu Q Ng HH Ruan Y A global map of p53 transcription-factor binding sites in the human genome Cell 2006, 124:207-219. 10.1016/j.cell.2005.10.043 16413492
-
(2006)
Cell
, vol.124
, pp. 207-219
-
-
Wei, C.L.1
Wu, Q.2
Vega, V.B.3
Chiu, K.P.4
Ng, P.5
Zhang, T.6
Shahab, A.7
Yong, H.C.8
Fu, Y.9
Weng, Z.10
Liu, J.11
Zhao, X.D.12
Chew, J.L.13
Lee, Y.L.14
Kuznetsov, V.A.15
Sung, W.K.16
Miller, L.D.17
Lim, B.18
Liu, E.T.19
Yu, Q.20
Ng, H.H.21
Ruan, Y.22
more..
-
37
-
-
30044449116
-
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
-
1356136 16344561 10.1101/gr.4074106
-
Crawford GE Holt IE Whittle J Webb BD Tai D Davis S Margulies EH Chen Y Bernat JA Ginsburg D Zhou D Luo S Vasicek TJ Daly MJ Wolfsberg TG Collins FS Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS) Genome Res 2006, 16:123-131. 1356136 16344561 10.1101/gr.4074106
-
(2006)
Genome Res
, vol.16
, pp. 123-131
-
-
Crawford, G.E.1
Holt, I.E.2
Whittle, J.3
Webb, B.D.4
Tai, D.5
Davis, S.6
Margulies, E.H.7
Chen, Y.8
Bernat, J.A.9
Ginsburg, D.10
Zhou, D.11
Luo, S.12
Vasicek, T.J.13
Daly, M.J.14
Wolfsberg, T.G.15
Collins, F.S.16
-
38
-
-
33751316959
-
In vivo enhancer analysis of human conserved non-coding sequences
-
10.1038/nature05295 17086198
-
Pennacchio LA Ahituv N Moses AM Prabhakar S Nobrega MA Shoukry M Minovitsky S Dubchak I Holt A Lewis KD Plajzer-Frick I Akiyama J De Val S Afzal V Black BL Couronne O Eisen MB Visel A Rubin EM In vivo enhancer analysis of human conserved non-coding sequences Nature 2006, 444:499-502. 10.1038/nature05295 17086198
-
(2006)
Nature
, vol.444
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
Shoukry, M.6
Minovitsky, S.7
Dubchak, I.8
Holt, A.9
Lewis, K.D.10
Plajzer-Frick, I.11
Akiyama, J.12
De Val, S.13
Afzal, V.14
Black, B.L.15
Couronne, O.16
Eisen, M.B.17
Visel, A.18
Rubin, E.M.19
-
39
-
-
20044375763
-
Array comparative genomic hybridization and its applications in cancer
-
10.1038/ng1569 15920524
-
Pinkel D Albertson DG Array comparative genomic hybridization and its applications in cancer Nat Genet 2005, 37(Suppl):S11-S17. 10.1038/ng1569 15920524
-
(2005)
Nat Genet
, vol.37
, Issue.SUPPL.
-
-
Pinkel, D.1
Albertson, D.G.2
-
40
-
-
20044384522
-
Mapping of genetic and epigenetic regulatory networks using microarrays
-
10.1038/ng1559 15920525
-
van Steensel B Mapping of genetic and epigenetic regulatory networks using microarrays Nat Genet 2005, 37(Suppl):S18-S24. 10.1038/ng1559 15920525
-
(2005)
Nat Genet
, vol.37
, Issue.SUPPL.
-
-
van Steensel, B.1
|