메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS ANALYSIS; MALIGNANT PROGRESSION; MICROARRAY TECHNOLOGIES; MOLECULAR UNDERSTANDING; PHENOTYPIC DIVERSITY; REGULATORY MECHANISM; REGULATORY SEQUENCES; TRANSCRIPTIONAL PROGRAM;

EID: 54849425774     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-404     Document Type: Article
Times cited : (35)

References (40)
  • 1
    • 0036782706 scopus 로고    scopus 로고
    • Transcription factors as targets for cancer therapy
    • 10.1038/nrc906 12360277
    • Darnell JE Jr Transcription factors as targets for cancer therapy Nat Rev Cancer 2002, 2:740-749. 10.1038/nrc906 12360277
    • (2002) Nat Rev Cancer , vol.2 , pp. 740-749
    • Darnell Jr., J.E.1
  • 7
    • 26444546442 scopus 로고    scopus 로고
    • An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival
    • 1197273 16141321 10.1073/pnas.0506230102
    • Miller LD Smeds J George J Vega VB Vergara L Ploner A Pawitan Y Hall P Klaar S Liu ET Bergh J An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival Proc Natl Acad Sci USA 2005, 102:13550-13555. 1197273 16141321 10.1073/pnas.0506230102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 13550-13555
    • Miller, L.D.1    Smeds, J.2    George, J.3    Vega, V.B.4    Vergara, L.5    Ploner, A.6    Pawitan, Y.7    Hall, P.8    Klaar, S.9    Liu, E.T.10    Bergh, J.11
  • 9
    • 0035135420 scopus 로고    scopus 로고
    • Regulatory element detection using correlation with expression
    • 10.1038/84792 11175784
    • Bussemaker HJ Li H Siggia ED Regulatory element detection using correlation with expression Nat Genet 2001, 27:167-171. 10.1038/84792 11175784
    • (2001) Nat Genet , vol.27 , pp. 167-171
    • Bussemaker, H.J.1    Li, H.2    Siggia, E.D.3
  • 10
    • 0037453009 scopus 로고    scopus 로고
    • Integrating regulatory motif discovery and genome-wide expression analysis
    • 152294 12626739 10.1073/pnas.0630591100
    • Conlon EM Liu XS Lieb JD Liu JS Integrating regulatory motif discovery and genome-wide expression analysis Proc Natl Acad Sci USA 2003, 100:3339-3344. 152294 12626739 10.1073/pnas.0630591100
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 3339-3344
    • Conlon, E.M.1    Liu, X.S.2    Lieb, J.D.3    Liu, J.S.4
  • 11
    • 9244257298 scopus 로고    scopus 로고
    • Interacting models of cooperative gene regulation
    • 528978 15534222 10.1073/pnas.0407365101
    • Das D Banerjee N Zhang MQ Interacting models of cooperative gene regulation Proc Natl Acad Sci USA 2004, 101:16234-16239. 528978 15534222 10.1073/pnas.0407365101
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 16234-16239
    • Das, D.1    Banerjee, N.2    Zhang, M.Q.3
  • 12
    • 1942453302 scopus 로고    scopus 로고
    • Predicting gene expression from sequence
    • 10.1016/S0092-8674(04)00304-6 15084257
    • Beer MA Tavazoie S Predicting gene expression from sequence Cell 2004, 117:185-198. 10.1016/S0092-8674(04)00304-6 15084257
    • (2004) Cell , vol.117 , pp. 185-198
    • Beer, M.A.1    Tavazoie, S.2
  • 13
    • 33745440791 scopus 로고    scopus 로고
    • Adaptively inferring human transcriptional subnetworks
    • 1681499 16760900 10.1038/msb4100067
    • Das D Nahle Z Zhang MQ Adaptively inferring human transcriptional subnetworks Mol Syst Biol 2006, 2:0029. 1681499 16760900 10.1038/ msb4100067
    • (2006) Mol Syst Biol , vol.2 , pp. 0029
    • Das, D.1    Nahle, Z.2    Zhang, M.Q.3
  • 14
    • 33646580422 scopus 로고    scopus 로고
    • DNA motifs in human and mouse proximal promoters predict tissue-specific expression
    • 1458868 16606849 10.1073/pnas.0508169103
    • Smith AD Sumazin P Xuan Z Zhang MQ DNA motifs in human and mouse proximal promoters predict tissue-specific expression Proc Natl Acad Sci USA 2006, 103:6275-6280. 1458868 16606849 10.1073/pnas.0508169103
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6275-6280
    • Smith, A.D.1    Sumazin, P.2    Xuan, Z.3    Zhang, M.Q.4
  • 15
    • 34548444625 scopus 로고    scopus 로고
    • Elucidating the altered transcriptional programs in breast cancer using independent component analysis
    • 1950343 17708679 10.1371/journal.pcbi.0030161
    • Teschendorff AE Journee M Absil PA Sepulchre R Caldas C Elucidating the altered transcriptional programs in breast cancer using independent component analysis PLoS Comput Biol 2007, 3:e161. 1950343 17708679 10.1371/journal.pcbi.0030161
    • (2007) PLoS Comput Biol , vol.3
    • Teschendorff, A.E.1    Journee, M.2    Absil, P.A.3    Sepulchre, R.4    Caldas, C.5
  • 18
    • 33644875782 scopus 로고    scopus 로고
    • A new generation of JASPAR, the open-access repository for transcription factor binding site profiles
    • 1347477 16381983 10.1093/nar/gkj115
    • Vlieghe D Sandelin A De Bleser PJ Vleminckx K Wasserman WW van Roy F Lenhard B A new generation of JASPAR, the open-access repository for transcription factor binding site profiles Nucleic Acids Res 2006, 34:D95-D97. 1347477 16381983 10.1093/nar/gkj115
    • (2006) Nucleic Acids Res , vol.34
    • Vlieghe, D.1    Sandelin, A.2    De Bleser, P.J.3    Vleminckx, K.4    Wasserman, W.W.5    van Roy, F.6    Lenhard, B.7
  • 19
    • 0033707946 scopus 로고    scopus 로고
    • Using Bayesian networks to analyze expression data
    • 10.1089/106652700750050961 11108481
    • Friedman N Linial M Nachman I Pe'er D Using Bayesian networks to analyze expression data J Comput Biol 2000, 7:601-620. 10.1089/ 106652700750050961 11108481
    • (2000) J Comput Biol , vol.7 , pp. 601-620
    • Friedman, N.1    Linial, M.2    Nachman, I.3    Pe'er, D.4
  • 20
    • 21144455401 scopus 로고    scopus 로고
    • Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays
    • 1149502 15951424 10.1073/pnas.0502674102
    • Pan KH Lih CJ Cohen SN Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays Proc Natl Acad Sci USA 2005, 102:8961-8965. 1149502 15951424 10.1073/pnas.0502674102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 8961-8965
    • Pan, K.H.1    Lih, C.J.2    Cohen, S.N.3
  • 22
    • 30344439849 scopus 로고    scopus 로고
    • Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity
    • 10.1016/j.cell.2005.10.042 16413481
    • Hallikas O Palin K Sinjushina N Rautiainen R Partanen J Ukkonen E Taipale J Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity Cell 2006, 124:47-59. 10.1016/j.cell.2005.10.042 16413481
    • (2006) Cell , vol.124 , pp. 47-59
    • Hallikas, O.1    Palin, K.2    Sinjushina, N.3    Rautiainen, R.4    Partanen, J.5    Ukkonen, E.6    Taipale, J.7
  • 23
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • 170937 12883005 10.1073/pnas.1530509100
    • Storey JD Tibshirani R Statistical significance for genomewide studies Proc Natl Acad Sci USA 2003, 100:9440-9445. 170937 12883005 10.1073/ pnas.1530509100
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 24
    • 0000336139 scopus 로고
    • Regression Models and Life-tables
    • Cox DR Regression Models and Life-tables J R Stat Soc Ser B 1972, 34:187-220.
    • (1972) J R Stat Soc Ser B , vol.34 , pp. 187-220
    • Cox, D.R.1
  • 25
    • 0026072872 scopus 로고
    • Pathological prognostic factors in breast cancer. I. The value of histological grade in breast cancer: Experience from a large study with long-term follow-up
    • 10.1111/j.1365-2559.1991.tb00229.x 1757079
    • Elston CW Ellis IO Pathological prognostic factors in breast cancer. I. The value of histological grade in breast cancer: Experience from a large study with long-term follow-up Histopathology 1991, 19:403-410. 10.1111/j.1365-2559.1991.tb00229.x 1757079
    • (1991) Histopathology , vol.19 , pp. 403-410
    • Elston, C.W.1    Ellis, I.O.2
  • 29
    • 0035515347 scopus 로고    scopus 로고
    • The ETS-domain transcription factor family
    • 10.1038/35099076 11715049
    • Sharrocks AD The ETS-domain transcription factor family Nat Rev Mol Cell Biol 2001, 2:827-837. 10.1038/35099076 11715049
    • (2001) Nat Rev Mol Cell Biol , vol.2 , pp. 827-837
    • Sharrocks, A.D.1
  • 31
    • 0036371956 scopus 로고    scopus 로고
    • Sibling rivalry in the E2F family
    • 10.1038/nrm714 11823794
    • Trimarchi JM Lees JA Sibling rivalry in the E2F family Nat Rev Mol Cell Biol 2002, 3:11-20. 10.1038/nrm714 11823794
    • (2002) Nat Rev Mol Cell Biol , vol.3 , pp. 11-20
    • Trimarchi, J.M.1    Lees, J.A.2
  • 32
    • 33645011201 scopus 로고    scopus 로고
    • Nuclear control of respiratory gene expression in mammalian cells
    • 10.1002/jcb.20743 16329141
    • Scarpulla RC Nuclear control of respiratory gene expression in mammalian cells J Cell Biochem 2006, 97:673-683. 10.1002/jcb.20743 16329141
    • (2006) J Cell Biochem , vol.97 , pp. 673-683
    • Scarpulla, R.C.1
  • 33
    • 8644281106 scopus 로고    scopus 로고
    • A common set of gene regulatory networks links metabolism and growth inhibition
    • 10.1016/j.molcel.2004.09.037 15525513
    • Cam H Balciunaite E Blais A Spektor A Scarpulla RC Young R Kluger Y Dynlacht BD A common set of gene regulatory networks links metabolism and growth inhibition Mol Cell 2004, 16:399-411. 10.1016/ j.molcel.2004.09.037 15525513
    • (2004) Mol Cell , vol.16 , pp. 399-411
    • Cam, H.1    Balciunaite, E.2    Blais, A.3    Spektor, A.4    Scarpulla, R.C.5    Young, R.6    Kluger, Y.7    Dynlacht, B.D.8
  • 34
    • 10044254753 scopus 로고    scopus 로고
    • E2Fs link the control of G1/S and G2/M transcription
    • 533046 15510213 10.1038/sj.emboj.7600459
    • Zhu W Giangrande PH Nevins JR E2Fs link the control of G1/S and G2/M transcription EMBO J 2004, 23:4615-4626. 533046 15510213 10.1038/ sj.emboj.7600459
    • (2004) EMBO J , vol.23 , pp. 4615-4626
    • Zhu, W.1    Giangrande, P.H.2    Nevins, J.R.3
  • 39
    • 20044375763 scopus 로고    scopus 로고
    • Array comparative genomic hybridization and its applications in cancer
    • 10.1038/ng1569 15920524
    • Pinkel D Albertson DG Array comparative genomic hybridization and its applications in cancer Nat Genet 2005, 37(Suppl):S11-S17. 10.1038/ng1569 15920524
    • (2005) Nat Genet , vol.37 , Issue.SUPPL.
    • Pinkel, D.1    Albertson, D.G.2
  • 40
    • 20044384522 scopus 로고    scopus 로고
    • Mapping of genetic and epigenetic regulatory networks using microarrays
    • 10.1038/ng1559 15920525
    • van Steensel B Mapping of genetic and epigenetic regulatory networks using microarrays Nat Genet 2005, 37(Suppl):S18-S24. 10.1038/ng1559 15920525
    • (2005) Nat Genet , vol.37 , Issue.SUPPL.
    • van Steensel, B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.