Analysis of area-specific expression patterns of RORbeta, ER81 and Nurr1 mRNAs in rat neocortex by double in situ hybridization and cortical box method

PLoS ONE

Volumn 3, Issue 9, 2008, Pages

  Hirokawa, Junya ^a,b   Watakabe, Akiya ^a,b   Ohsawa, Sonoko ^a   Yamamori, Tetsuo ^a,b  

^a NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

^b GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELL RECEPTOR; COMPLEMENTARY DNA; DNA BINDING PROTEIN; ETV1 PROTEIN, RAT; MESSENGER RNA; NURR1 NUCLEAR RECEPTOR; PRIMER DNA; RETINOIC ACID RELATED ORPHAN RECEPTOR BETA; RETINOIC ACID-RELATED ORPHAN RECEPTOR BETA; TRANSACTIVATOR PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ANIMAL; ARTICLE; BIOSYNTHESIS; CHEMISTRY; GENE EXPRESSION REGULATION; GENETICS; IMAGE PROCESSING; IN SITU HYBRIDIZATION; MALE; METABOLISM; MOUSE; NEOCORTEX; RAT; TISSUE DISTRIBUTION;

ANIMALS; DNA PRIMERS; DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION; IMAGE PROCESSING, COMPUTER-ASSISTED; IN SITU HYBRIDIZATION; MALE; MICE; NEOCORTEX; RATS; RECEPTORS, CYTOPLASMIC AND NUCLEAR; RNA, MESSENGER; TISSUE DISTRIBUTION; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

EID: 54749114921     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0003266     Document Type: Article

References (65)

1. Brodmann K (1909) Vergleichende Lokalisationlehre der Grosshirnrinde. Leipzig: Barth.
2. Felleman DJ, Van Essen DC (1991) Distributed hierarchical processing in the primate cerebral cortex. Cereb Cortex 1: 1-47.
3. von Bonin G, Bailey P (1947) The neocortex of Macaca mulatta. Illinois (Urbana): University of Illinois Press.
4. Hof PR, Nimchinsky EA, Morrison JH (1995) Neurochemical phenotype of corticocortical connections in the macaque monkey: quantitative analysis of a subset of neurofilament protein-immunoreactive projection neurons in frontal, parietal, temporal, and cingulate cortices. J Comp Neurol 362: 109-133.
5. Pimenta AF, Zhukareva V, Barbe MF, Reinoso BS, Grimley C, et al. (1995) The limbic system-associated membrane protein is an Ig superfamily member that mediates selective neuronal growth and axon targeting. Neuron 15: 287-297.
6. Lidow MS, Goldman Rakic PS, Gallager DW, Geschwind DH, Rakic P (1989) Distribution of major neurotransmitter receptors in the motor and somatosensory cortex of the rhesus monkey. Neuroscience 32: 609-627.
7. Zilles K, Palomero-Gallagher N, Grefkes C, Scheperjans F, Boy C, et al. (2002) Architectonics of the human cerebral cortex and transmitter receptor fingerprints: reconciling functional neuroanatomy and neurochemistry. Eur Neuropsychopharmacol 12: 587-599.
8. Palomero-Gallagher N, Zilles K (2004) The rat isocortex. In: Paxinos G, ed. The Rat Nervous System. San Diego: Academic Press. pp 729-757.
9. Eickhoff SB, Schleicher A, Scheperjans F, Palomero-Gallagher N, Zilles K (2007) Analysis of neurotransmitter receptor distribution patterns in the cerebral cortex. Neuroimage 34: 1317-1330.
10. Weimann JM, Zhang YA, Levin ME, Devine WP, Brulet P, et al. (1999) Cortical neurons require Otx1 for the refinement of exuberant axonal projections to subcortical targets. Neuron 24: 819-831.
11. Rubenstein JL, Anderson S, Shi L, Miyashita Lin E, Bulfone A, et al. (1999) Genetic control of cortical regionalization and connectivity. Cereb Cortex 9: 524-532.
12. Hatanaka Y, Jones EG (1999) Novel genes expressed in the developing medial cortex. Cereb Cortex 9: 577-585.
13. Xing G, Zhang L, Zhang L, Heynen T, Li XL, et al. (1997) Rat nurr1 is prominently expressed in perirhinal cortex, and differentially induced in the hippocampal dentate gyrus by electroconvulsive vs. kindled seizures. Brain Res Mol Brain Res 47: 251-261.
14. Schaeren Wiemers N, Andre E, Kapfhammer JP, Becker Andre M (1997) The expression pattern of the orphan nuclear receptor RORbeta in the developing and adult rat nervous system suggests a role in the processing of sensory information and in circadian rhythm. Eur J Neurosci 9: 2687-2701.
15. Arimatsu Y, Ishida M, Sato M, Kojima M (1999) Corticocortical associative neurons expressing latexin: specific cortical connectivity formed in vivo and in vitro. Cereb Cortex 9: 569-576.
16. Liu Q, Dwyer ND, O'Leary DD (2000) Differential expression of COUP-TFI, CHL1, and two novel genes in developing neocortex identified by differential display PCR. J Neurosci 20: 7682-7690.
17. Tochitani S, Liang F, Watakabe A, Hashikawa T, Yamamori T (2001) The occl gene is preferentially expressed in the primary visual cortex in an activity-dependent manner: a pattern of gene expression related to the cytoarchitectonic area in adult macaque neocortex. Eur J Neurosci 13: 297-307.
18. Hevner RF, Shi L, Justice N, Hsueh Y, Sheng M, et al. (2001) Tbr1 regulates differentiation of the preplate and layer 6: Neuron 29: 353-366.
19. Arimatsu Y, Ishida M, Kaneko T, Ichinose S, Omori A (2003) Organization and development of corticocortical associative neurons expressing the orphan nuclear receptor Nurr1. J Comp Neurol 466: 180-196.
20. Zhong Y, Takemoto M, Fukuda T, Hattori Y, Murakami F, et al. (2004) Identification of the genes that are expressed in the upper layers of the neocortex. Cereb Cortex 14: 1144-1152.
21. Komatsu Y, Watakabe A, Hashikawa T, Tochitani S, Yamamori T (2005) Retinol-binding protein gene is highly expressed in higher-order association areas of the primate neocortex. Cereb Cortex 15: 96-100.
22. Yoneshima H, Yamasaki S, Voelker CC, Molnar Z, Christophe E, et al. (2006) Er81 is expressed in a subpopulation of layer 5 neurons in rodent and primate neocortices. Neuroscience 137: 401-412.
23. Watakabe A, Ichinohe N, Ohsawa S, Hashikawa T, Komatsu Y, et al. (2007) Comparative analysis of layer-specific genes in mammalian neocortex. Cereb Cortex 17: 1918-1933.
24. Gray PA, Fu H, Luo P, Zhao Q, Yu J, et al. (2004) Mouse brain organization revealed through direct genome-scale TF expression analysis. Science 306: 2255-2257.
25. Heintz N (2004) Gene expression nervous system atlas (GENSAT). Nat Neurosci 7: 483.
26. Visel A, Thaller C, Eichele G (2004) GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res 32: D552-556.
27. Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, et al. (2006) Genomewide atlas of gene expression in the adult mouse brain. Nature 445:168-176.
28. Rockel AJ, Hiorns RW, Power TP (1980) The basic uniformity in structure of the neocortex. Brain 103: 221-244.
29. Lund JS (1988) Anatomical organization of macaque monkey striate visual cortex. Annu Rev Neurosci 11: 253-288.
30. Casagrande VA, Kaas JH (1994) In: Peters A, Rockland K, eds. Cerebral Cortex, Volume 10: Primary Visual Cortex in Primates. New York: Plenum Press. pp 201-259.
31. Hirokawa J, Bosch M, Sakata S, Sakurai Y, Yamamori T (2000) Functional role of the secondary visual cortex in multisensory facilitation in rats. Neuroscience 153: 1402-1417.
32. Bjaalie JG (2002) Opinion: Localization in the brain: new solutions emerging. Nat Rev Neurosci 3: 322-325.
33. MacKenzie Graham A, Lee EF, Dinov ID, Bota M, Shattuck DW, et al. (2004) A multimodal, multidimensional atlas of the C57BL/6J mouse brain. J Anat 204: 93-102.
34. Nguyen PT, Holschneider DP, Maarek JM, Yang J, Mandelkern MA (2004) Statistical parametric mapping applied to an autoradiographic study of cerebral activation during treadmill walking in rats. Neuroimage 23: 252-259.
35. Gabbott PL, Warner TA, Jays PR, Salway P, Busby SJ (2005) Prefrontal cortex in the rat: projections to subcortical autonomic, motor, and limbic centers. J Comp Neurol 492: 145-177.
36. Zilles K, Zilles B, Schleicher A (1900) A quantitative approach to cytoarchitectonics. VI. The areal pattern of the cortex of the albino rat. Anat Embryol (Bed) 159: 335-360.
37. Schleicher A, Zilles K (1990) A quantitative approach to cytoarchitectonics: analysis of structural inhomogeneities in nervous tissue using an image analyser. J Microsc 157: 367-381.
38. Zilles K, Wree A, Schleicher A, Divac I (1984) The monocular and binocular subfields of the rat's primary visual cortex: a quantitative morphological approach. J Comp Neurol 226: 391-402.
39. Paxinos G, Watson C (2005) The Rat Brain In Stereotaxic Coordinates (5th ed.). San Diego: Academic Press.
40. Schleicher A, Amunts K, Geyer S, Morosan P, Zilles K (1999) Observer-independent method for microstructural parcellation of cerebral cortex: A quantitative approach to cytoarchitectonics. Neuroimage 9: 165-177.
41. Wada M, Yoshimi K, Higo N, Ren YR, Mochizuki H, et al. (2006) Statistical parametric mapping of immunopositive cell density. Neurosci Res. 56: 96-102.
42. Schwarz AJ, Danckaert A, Reese T, Gozzi A, Paxinos G, et al. (2006) A stereotaxic MRI template set for the rat brain with tissue class distribution maps and co-registered anatomical atlas: application to pharmacological MRI. Neuroimage 32: 538-550.
43. Van Essen DC, Drury HA, Joshi S, Miller MI (1998) Functional and structural mapping of human cerebral cortex: solutions are in the surfaces. Proc Natl Acad Sci U S A 95: 788-795.
44. Welker C (1976) Receptive fields of barrels in the somatosensory neocortex of the rat. J Comp Neurol 166: 173-189.
45. Chapin JK, Sadeq M, Guise JL (1987) Corticocortical connections within the primary somatosensory cortex of the rat. J Comp Neurol 263: 326-346.
46. Fabri M, Burton H (1991) Ipsilateral cortical connections of primary somatic sensory cortex in rats. J Comp Neurol 311: 405-424.
47. Killackey HP, Sherman SM (2003) Corticothalamic projections from the rat primary somatosensory cortex. J Neurosci. 23: 7381-7384.
48. Arnault P, Roger M (1990) Ventral temporal cortex in the rat: connections of secondary auditory areas Te2 and Te3. J Comp Neurol 302: 110-123.
49. Paxinos G, Watson C (1997) The Rat Brain in Stereotaxic Coordinates (3rd ed.). Sydney: Academic Press.
50. Swanson L (2004) Brain maps: structure of the rat brain (3rd ed.). Amsterdam: Elsevier Academic Press.
51. Geyer S, Matelli M, Luppino G, Schleicher A, Jansen Y, et at (1998) Receptor autoradiographic mapping of the mesial motor and premotor cortex of the macaque monkey. J Comp Neurol 397: 231-250.
52. Livingstone MS, Hubel DH (1982) Thalamic inputs to cytochrome oxidase-rich regions in monkey visual cortex. Proc Natl Acad Sci U S A 79: 6098-6101.
53. Ding Y, Casagrande VA (1998) Synaptic and neurochemical characterization of parallel pathways to the cytochrome oxidase blobs of primate visual cortex. J Comp Neurol 391: 429-443.
54. Wong Riley M (1979) Changes in the visual system of monocularly sutured or enucleated cats demonstrable with cytochrome oxidase histochemistry. Brain Res 171: 11-28.
55. Wong Riley MT, Welt C (1980) Histochemical changes in cytochrome oxidase of cortical barrels after vibrissal removal in neonatal and adult mice. Proc Natl Acad Sci U S A 77: 2333-2337.
56. Dragunow M (1996) A role for immediate-early transcription factors in learning and memory. Behav Genet 26: 293-299.
57. Mataga N, Fujishima S, Condie BG, Hensch TK (2001) Experience-dependent plasticity of mouse visual cortex in the absence of the neuronal activity-dependent marker egr1/zif268. J Neurosci 21: 9724-9732.
58. Sur M, Rubenstein JL (2005) Patterning and plasticity of the cerebral cortex. Science 310: 805-810.
59. Lu SM, Lin RC (1993) Thalamic afferents of the rat barrel cortex: a light- and electron-microspic study using Phaseolus vulgaris leucoagglutinin as an anterograde tracer. Somatosens Mot Res 10: 1-16.
60. Pierret T, Lavallee P, Deschenes M (2000) Parallel streams for the relay of vibrissal information through thalamic barreloids. J Neurosci 20: 7455-7462.
61. Douglas RJ, Martin KA (2004) Neuronal circuits of the neocortex. Annu Rev Neurosci 27: 419-451.
62. Bishop KM, Goudreau G, O'Leary DD (2000) Regulation of area identity in the mammalian neocortex by Emx2 and Pax6. Science 288: 344-349.
63. Bayer SA, Altman J (1991) Neocortical development. New York: Raven Press.
64. Liang F, Hatanaka Y, Saito H, Yamamori T, Hashikawa T (2000) Differential expression of gamma-aminobutyric acid type B receptor-1a and -1b mRNA variants in GABA and non-GABAergic neurons of the rat brain. J Comp Neurol 416: 475-495.
65. Briggman KL, Abarbanel HD, Kristan WB Jr (2005) Optical imaging of neuronal populations during decision-making. Science 307: 896-901.