Feasibility of a cost-effective approach to evaluate short tandem repeat markers suitable for chimerism follow-up

Molecular Diagnosis

Volumn 8, Issue 2, 2004, Pages 87-91

  Fundia, Ariela F ^a,b   De Brasi, Carlos ^a   Larripa, Irene ^a  

^a Medical College of Buenos Aires   (Argentina)

^b INST DE INVEST HEMATOLOGICAS   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

DINUCLEOTIDE; MOLECULAR MARKER; TAQ POLYMERASE;

ACCURACY; ALLOGENIC BONE MARROW TRANSPLANTATION; ARGENTINA; ARTICLE; ASSAY; BLOOD DONOR; CHEEK MUCOSA; CHIMERA; COST EFFECTIVENESS ANALYSIS; DILUTION COMPETITION ASSAY; FEMALE; FLUORESCENCE IN SITU HYBRIDIZATION; FOLLOW UP; GENE AMPLIFICATION; GENOTYPE; HETEROZYGOSITY; HUMAN; HUMAN TISSUE; MALE; MARKER GENE; MIXED CHIMERISM; MONITORING; NON DENATURING POLYACRYLAMIDE GEL ELECTROPHORESIS; NORMAL HUMAN; ORGAN DONOR; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; SCREENING; SHORT TANDEM REPEAT; SIBLING; SILVER STAINING; TOUCH DOWN POLYMERASE CHAIN REACTION;

BONE MARROW TRANSPLANTATION; CHILD; CHIMERISM; COST-BENEFIT ANALYSIS; FEMALE; GENETIC MARKERS; HUMANS; MALE; MIDDLE AGED; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; TANDEM REPEAT SEQUENCES; TRANSPLANTATION CHIMERA;

EID: 5444275297     PISSN: 10848592     EISSN: None     Source Type: Journal    
DOI: 10.2165/00066982-200408020-00002     Document Type: Article

References (32)

1. Baccichet A, Benachenhou N, Couture F, et al. Microsatellite instability in childhood T cell acute lymphoblastic leukemia. Leukemia 1997 Jun; 11 (6): 797-802
2. Weber JL, May PE. Abundant class of human DNA polymorphisms which can be typed using polymerase chain reaction. Am J Hum Genet 1989 Mar; 44 (3): 388-96
3. Litt M, Luty JA. A hypervariable microsatellite revealed by in vitro amplification of dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet 1989 Mar; 44 (3): 397-401
4. Dib C, Faure S, Fizames C, et al. A comprehensive genetic map of the human genome based on 5264 microsatellites. Nature 1996 Mar; 380 (6570): 152-4
5. Peltomaki P, Lothe RA, Aaltonen LA, et al. Microsatellite instability is associated with tumors that characterise the hereditary non-polyposis colorectal carcinoma syndrome. Cancer Res 1993 Dec; 53 (24): 5853-5
6. Honchel R, Hailing KC, Thibodeau SN. Genomic instability in neoplasia. Semin Cell Biol 1995 Feb; 6 (1): 45-52
7. Brentnall TA. Microsatellite instability. Shifting concepts in tumorigenesis. Am J Pathol 1995 Sep; 147 (3): 561-3
8. Hearne CM, Ghosh S, Todd JA. Microsatellites for linkage analysis of genetic traits. Trends Genet 1992 Aug; 8 (8): 288-94
9. Gupta PK, Balyan HS, Sharma PC, et al. Microsatellites in plants: a new class of molecular markers. Curr Sci 1996; 70: 45-54
10. Boland CR, Thibodeau SN, Hamilton SR, et al. A National Cancer Institute Workshop on Microsalellile Instability for Cancer Detection and Familial Predisposition: development of international criteria for the determination of microsatellite instability in colorectal cancer. Cancer Res 1998 Nov 15; 58 (22): 5248-57
11. Vaurs C, Bignon YJ. What's new about microsatellite instability significance in human carcinogenesis? Bull Cancer 1997 Nov; 84 (11): 1061-71
12. Gleissner B, Blau IW, Sindram A, et al. Analysis of chimerism during early period after allogeneic peripheral stem cell transplantation. Clin Lab Haematol 2001 Dec; 23 (6): 401-6
13. Antin JH, Childs R, Filipovich AH, et al. Establishment of complete and mixed donor chimerism after allogeneic lymphohematopoietic transplantation: recommendations from a workshop at the 2001 Tandem Meetings of the International Bone Marrow Transplant Registry and the American Society of Blood and Marrow Transplantation. Biol Blood Marrow Transplant 2001; 7 (9): 473-85
14. Thiede C, Bornhäuser M, Oelschlägel U, et al. Sequential monitoring of chimerism and detection of minimal residual disease after allogeneic blood stem cell transplantation (BSCT) using multiplex PCR amplification of short tandem repeat-markers. Leukemia 2001 Feb; 15 (2): 293-302
15. Ambros PF, Méhes G, Hattinger C, et al. Unequivocal identification of disseminated tumor cells in the bone marrow by combining immunological and genetic approaches-functional and prognostic information. Leukemia 2001 Feb; 15 (2): 275-7
16. Sambrook J, Fritsch EF, Maniatis T. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press, 1989
17. Lahiri DK, Nuremberg JI. A rapid non-enzymatic method for the preparation of HMW DNA from blood for RFLP studies [letter]. Nucleic Acids Res 1991; 19: 5444
18. Weber JL, Kwitek AE, May PE. Dinucleotide repeat polymorphisms at the D5S107, D5S108, D5S111, D5S117 and D5S118 loci [letter]. Nucleic Acids Res 1990 Jul 11; 18(13): 4035
19. The genome database: an international collaboration in support of the Human Genome Project [online]. Available from URL: http:www.gdb.org [Accessed 2004 Jul 2]
20. Gyapay G, Morissette J, Vignal A, et al. The 1993-94 Genethon human genetic linkage map. Nat Genet 1994 Jun; 7 (2 Spec, Iss.): 246-339
21. Jones MH, Nakamura Y. Detection of loss of heterozygosity at the human TP53 locus using a dinucleotide repeat polymorphism. Genes Chromosomes Cancer 1992 Jul; 5 (1): 89-92
22. Joseph SS. The analysis of microsatellites by silver staining of nondenaturing polyacrylamide gels. In: Tietz D, editor. Nucleic acid electrophoresis. New York: Springer Verlag, 1998: 162-9
23. Don RH, Cox PT, Wainwright BJ, et al. Touchdown PCR to circumvent spurious priming during gene amplification [letter]. Nucleic Acids Res 1991; 19: 4008
24. Thiede C, Florek M, Bornhäuser M, et al. Rapid quantification of mixed chimerism using multiplex amplification of short tandem repeat markers and fluorescence detection. Bone Marrow Transplant 1999 May; 23 (10): 1055-60
25. Saiki RK, Gelfand DH, Stoffel S, et al. Primer-directed enzymatic amplification of DNA with thermostable DNA polymerase. Science 1988 Jan; 239 (4839): 487-91
26. Nuckols JD, Rasheed BKA, McGlennen RC, et al. Evaluation of an automated technique for assessment of marrow engraftment after allogeneic bone marrow transplantation using a commercially available kit. Am J Clin Pathol 2000 Jan; 113 (1): 135-40
27. Alizadeh M, Bernard M, Danic B, et al. Quantitative assessment of hematopoietic chimerism after bone marrow transplantation by real-time quantitative polymerase chain reaction. Blood 2002 Jun; 99 (12): 4618-25
28. Bader P, Klingebiel T, Schaudt A, et al. Prevention of relapse in pediatric patients with acute leukemias and MDS after allogeneic SCT by early immunotherapy initiated on the basis of increasing mixed chimerism: a single center experience of 12 children. Leukemia 1999 Dec; 13(12): 2076-86
29. Lion T, Daxberger H, Dubovsky J, et al. Analysis of chimerism within specific leukocyte subsets for detection of residual or recurrent leukemia in pediatric patients after allogeneic stem cell transplantation. Leukemia 2001 Feb; 15 (2): 307-10
30. Walsh PS, Erlich HA, Higuchi R. Preferential PCR amplification of alleles: mechanisms and solutions. PCR Methods Appl 1992 May; 1 (4): 241-50
31. Gallardo D, Rodriguez-Luaces M, Aróstegui JI, et al. Follow-up of chimerism status after allogeneic HLA-mismatched stem cell transplantation by detection of non-shared HLA alleles. Haematologica 2000 Aug; 85 (8): 848-54
32. Elmaagacli AH. Real-time PCR for monitoring minimal residual disease and chimerism in patients after allogeneic transplantation. Int J Hematol 2002 Aug; 76 Suppl. 2: 204-5