Genomic classification of new betanodavirus isolates by phylogenetic analysis of the coat protein gene suggests a low host-fish species specificity

Journal of General Virology

Volumn 85, Issue 10, 2004, Pages 3079-3087

  Thiéry, Richard ^a   Cozien, Joëlle ^a   de Boisséson, Claire ^a   Kerbart Boscher, Soasig ^a   Névarez, Laurent ^a  

^a Healthy Pigs Production and Experimentation Section   (France)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; CAPSID PROTEIN;

ARTICLE; BETANODAVIRUS; BRAIN DISEASE; CONTROLLED STUDY; EUROPE; EUROPEAN SEA BASS; FISH; FLOUNDER; GENE SEQUENCE; GENOTYPE; GEOGRAPHIC DISTRIBUTION; LOW TEMPERATURE; NODAVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RETINOPATHY; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; VIRUS CLASSIFICATION; VIRUS DETECTION; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN; AMINO ACID SEQUENCE; ANIMAL; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; VIROLOGY;

BARFIN FLOUNDER NERVOUS NECROSIS VIRUS; BETANODAVIRUS; CARANX DELICATISSIMUS; DICENTRARCHUS; DICENTRARCHUS LABRAX; EPINEPHELUS ANALOGUS; NODAVIRIDAE; PLEURONECTOIDEI; REDSPOTTED GROUPER NERVOUS NECROSIS VIRUS; SERRANIDAE; SOLEA SENEGALENSIS; STRIPED JACK NERVOUS NECROSIS VIRUS; VERASPER MOSERI;

AMINO ACID SEQUENCE; ANIMALS; CAPSID PROTEINS; FISHES; GENOME, VIRAL; GENOTYPE; MOLECULAR SEQUENCE DATA; NODAVIRIDAE; PHYLOGENY; SPECIES SPECIFICITY; VARIATION (GENETICS);

EID: 5444234221     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.80264-0     Document Type: Article

References (34)

1. Aspehaug, V., Devold, M. & Nylund, A. (1999). The phylogenetic relationship of nervous necrosis virus from halibut (Hippoglossus hippoglossus). Bull Eur Assoc Fish Pathol 19, 196-202.
2. Ball, L. A., Hendry, D. A., Johnson, J. E., Rueckert, R. R. & Scotti, P. D. (2000). Family Nodaviridae. In Virus Taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses, pp. 747-755. Edited by M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle & R. B. Wickner. San Diego: Academic Press.
3. Breuil, G., Mouchel, O., Fauvel, C. & Pépin, J. F. P. (2001). Sea bass Dicentrarchus labrax nervous necrosis virus isolates with distinct pathogenicity to sea bass larvae. Dis Aquat Organ 45, 25-31.
4. Breuil, G., Pépin, J. F. P., Boscher, S. & Thiéry, R. (2002). Experimental vertical transmission of nodavirus from broodfish to eggs and larvae of the sea bass, Dicentrarchus labrax (L.). J Fish Dis 25, 697-702.
5. Castric, J., Thiéry, R., Jeffroy, J., de Kinkelin, P. & Raymond, J.-C. (2001). Sea bream Sparus aurata, an asymptomatic contagious fish host for nodavirus. Dis Aquat Organ 47, 33-38.
6. Chi, S.-C., Lo, B.-J. & Lin, S.-C. (2001). Characterization of grouper nervous necrosis virus (GNNV). J Fish Dis 24, 3-14.
7. Chi, S.-C., Shieh, J.-R. & Lin, S.-J. (2003). Genetic and antigenic analysis of betanodaviruses isolated from aquatic organisms in Taiwan. Dis Aquat Organ 55, 221-228.
8. Dalla Valle, L., Negrisolo, E., Patarnello, P., Zanella, L., Maltese, C., Bovo, G. & Colombo, L. (2001). Sequence comparison and phylogenetic analysis of fish nodaviruses based on the coat protein gene. Arch Virol 146, 1125-1137.
9. Delsert, C., Morin, N. & Comps, M. (1997). A fish encephalitis virus that differs from other nodaviruses by its capsid protein processing. Arch Virol 142, 2359-2371.
10. Frerichs, G. N., Rodger, H. D. & Peric, Z. (1996). Cell culture isolation of piscine neuropathy nodavirus from juvenile sea bass, Dicentrarchus labrax. J Gen Virol 77, 2067-2071.
11. Galtier, N., Gouy, M. & Gautier, C. (1996). SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12, 543-548.
12. Grotmol, S., Nerland, A. H., Biering, E., Totland, G. K. & Nishizawa, T. (2000). Characterisation of the capsid protein gene from a nodavirus strain affecting the Atlantic halibut Hippoglossus hippoglossus and design of an optimal reverse-transcriptase polymerase chain reaction (RT-PCR) detection assay. Dis Aquat Organ 39, 79-88.
13. Hegde, A., Chen, C.-L., Qin, Q.-W., Lam, T.-J. & Sin, Y.-M. (2002). Characterization, pathogenicity and neutralization studies of a nervous necrosis virus isolated from grouper, Epinephelus tauvina, in Singapore. Aquaculture 213, 55-72.
14. Hegde, A., Teh, H.-C., Lam, T.-J. & Sin, Y.-M. (2003). Nodavirus infection in freshwater ornamental fish, guppy, Poicelia reticulata- comparative characterization and pathogenicity studies. Arch Virol 148, 575-586.
15. Johnson, S. C., Sperker, S. A., Leggiadro, C. T., Groman, D., Griffiths, S. G., Ritchie, R. J., Cook, M. D. & Cusack, R. (2002 . Identification and characterization of a piscine neuropathy and nodavirus from juvenile Atlantic cod (Gadus morhua). J Aquat Anim Health 14, 124-133.
16. Lai, Y.-S., Murali, S., Chiu, H.-C., Ju, H.-Y., Lin, Y.-S., Chen, S.-C., Guo, I.-C., Fang, K. & Chang, C.-Y. (2001). Propagation of yellow grouper nervous necrosis virus (YGNNV) in a new nodavirus-susceptible cell line from yellow grouper, Epinephelus awoara (Temminck & Schlegel), brain tissue. J Fish Dis 24, 299-309.
17. Lin, C.-S., Lu, M.-W., Tang, L., Liu, W., Chao, C.-B., Lin, C. J., Krishna, N. K., Johnson, J. E. & Schneemann, A. (2001 . Characterization of virus-like particles assembled in a recombinant baculovirus system expressing the capsid protein of a fish nodavirus. Virology 290, 50-58.
18. Munday, B. L., Nakai, T. & Nguyen, H. D. (1994). Antigenic relationship of the picorna-like virus of larval barramundi, Lates calcarifer Bloch to the nodavirus of larval striped jack, Pseudocaranx dentex (Bloch & Schneider). Aust Vet J 71, 384-385.
19. Munday, B. L., Kwang, J. & Moody, N. (2002). Betanodavirus infection of teleost fish: a review. J Fish Dis 25 127-142.
20. Nagai, T. & Nishizawa, T. (1999). Sequence of the non-structural protein gene encoded by RNA1 of striped jack nervous necrosis virus. J Gen Virol 80, 3019-3022.
21. Nishizawa, T., Mori, K., Nakai, T., Furusawa, I. & Muroga, K. (1994). Polymerase chain reaction (PCR) amplification of RNA of striped jack nervous necrosis virus (SJNNV). Dis Aquat Org 18 103-107.
22. Nishizawa, T., Mori, K., Furuhashi, M., Nakai, T., Furusawa, I. & Muroga, K. (1995). Comparison of the coat protein genes of five fish nodaviruses, the causative agents of viral nervous necrosis in marine fish. J Gen Virol 76, 1563-1569.
23. Nishizawa, T., Furuhashi, M., Nagai, T., Nakai, T. & Muroga, K. (1997). Genomic classification of fish nodaviruses by molecular phylogenetic analysis of the coat protein gene. Appl Environ Microbiol 63, 1633-1636.
24. OIE (1995). Viral encephalopathy and retinopathy. In Diagnostic Manual for Aquatic Animal Diseases, pp. 85-90. Paris: Office International des Epizooties.
25. Page, R. D. M. (1996). TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
26. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
27. Sideris, D. C. (1997). Cloning, expression and purification of the coat protein of encephalitis virus (DIEV) infecting Dicentrarchus labrax. Biochem Mol Biol Int 42, 409-417.
28. Skliris, G. P., Krondiris, J. V., Sideris, D. C., Shinn, A. P., Starkey, W. G. & Richards, R. H. (2001). Phylogenetic and antigenic characterization of new fish nodavirus isolates from Europe and Asia. Virus Res 75, 59-67.
29. Sri Widada, J., Durand, S., Cambournac, I., Qian, D., Shi, Z., Dejonghe, E., Richard, V. & Bonami, J. R. (2003). Genome-based detection methods of Macrobrachium rosenbergii nodavirus, a pathogen of the giant freshwater prawn, Macrobrachium rosenbergii: dot-blot, in situ hybridization and RT-PCR. J Fish Dis 26 583-590.
30. Starkey, W. G., Ireland, J. H., Muir, K. F., Shinn, A. P., Richards, R. H. & Fergusson, H. W. (2000). Isolation of nodavirus from Scottish farmed halibut, Hippoglossus hippoglossus (L). J Fish Dis 23, 418-422.
31. Tan, C., Huang, B., Chang, S. F., Ngoh, G. H., Munday, B., Chen, S. C. & Kwang, J. (2001). Determination of the complete nuclentide sequences of RNA1 and RNA2 from greasy grouper (Epinephelus tauvina) nervous necrosis virus, Singapore strain. J Gen Virol 82, 647-653.
32. Tang, L., Lin, C.-S., Krishna, N. K., Yeager, M., Schneemann, A. & Johnson, J. E. (2002). Virus-like particles of a fish nodavirus display a capsid subunit domain organization different from that of insect nodaviruses. J Virol 76, 6370-6375.
33. Thiéry, R., Arnauld, C. & Delsert, C. (1999). Two different isolates of sea bass, Dicentrarchus labrax L., nervous necrosis virus with distinct genomes. J Fish Dis 22, 201-207.
34. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.