Sequence comparison and phylogenetic analysis of fish nodaviruses based on the coat protein gene

Archives of Virology

Volumn 146, Issue 6, 2001, Pages 1125-1137

  Dalla Valle, L ^a   Negrisolo, E ^a   Patarnello, P ^c   Zanella, L ^b   Maltese, C ^d   Bovo, G ^d   Colombo, L ^a  

^a UNIVERSITY OF PADOVA   (Italy)

^b Veneto Agricoltura   (Italy)

^c UNIVERSITY OF UDINE   (Italy)

^d ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLE VENEZIE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

FISH; MEDITERRANEAN SEA; MONOPHYLY; NERVOUS NECROSIS VIRUS; NODAVIRUS; PHYLOGENETIC ANALYSIS; PHYLOGENY; PISCINODAVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS INFECTION;

ANIMALS; BASE SEQUENCE; BASS; CAPSID; DNA PRIMERS; EVOLUTION, MOLECULAR; FISHES; GENES, VIRAL; MEDITERRANEAN SEA; MOLECULAR SEQUENCE DATA; PERCIFORMES; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA VIRUSES; VARIATION (GENETICS);

ANIMALIA; DICENTRARCHUS LABRAX; DNA VIRUSES; EPINEPHELUS ANALOGUS; NODAVIRIDAE; PHYLO; REDSPOTTED GROUPER NERVOUS NECROSIS VIRUS; SERRANIDAE; STRIPED JACK NERVOUS NECROSIS VIRUS; UMBRINA CIRROSA;

EID: 0034911105     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050170110     Document Type: Article

References (22)

1. The phylogenetic relationship of nervous necrosis virus from halibut (Hippoglossus hippoglossus)
2. Viral encephalopathy and retinopathy of farmed marine fish species in Italy
3. Viral infection (picorna-like virus) associated with mass mortalities in hatchery-reared sea bass (Dicentrarchus labrax) larvae and juveniles
4. Purification and characterization of two fish encephalitis viruses (FEV) infecting Lates calcarifer and Dicentrarchus labrax
5. Fish nodavirus lytic cycle and semipermissive expression in mammalian and fish cell cultures
6. A fish encephalitis virus that differs from other nodaviruses by its capsid protein processing
7. Confidence limits on phylogenies: An approach using the bootstrap
8. Characterisation of the capsid protein gene from a nodavirus strain affecting the Atlantic halibut Hippoglossus hippoglossus and design of an optimal reverse-transcriptase polymerase chain reaction (RT-PCR) detection assay
9. Family Nodaviridae
10. Viral nervous necrosis (VNN) associated with mass mortalities in cage-reared sea bass, Dicentrarchus labrax (L.)
11. Properties of a new virus belonging to Nodaviridae found in larval striped jack (Pseudocaranx dentex) with nervous necrosis
12. Sequence of the non-structural protein gene encoded by RNA1 of striped jack nervous necrosis virus
13. Comparison of the coat protein genes of five fish nodaviruses, the causative agents of viral nervous necrosis in marine fish
14. Genomic classification of fish nodaviruses by molecular phylogenetic analysis of the coat protein gene
15. Mapping a neutralizing epitope on the coat protein of striped jack nervous necrosis virus
16. The neighbor-joining method: A new method for reconstructing phylogenetic trees
17. Cloning, expression and purification of the coat protein of encephalitis virus (DlEV) infecting Dicentrarchus labrax
18. Two isolates of sea bass, Dicentrarchus labrax L., nervous necrosis virus with distinct genomes
19. Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighing, position-specific gap penalties and weight matrix choice
20. Pathogenicity of nodavirus strain from striped jack Pseudocaranx dentex and Atlantic halibut Hippoglossus hippoglossus, studied by waterborne challenge of yolk-sac larvae of both teleost species
21. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment