Sequence analysis of four double-stranded RNA genomic segments reveals an orthoreovirus with a unique genotype infecting psittaciformes

Avian Diseases

Volumn 52, Issue 3, 2008, Pages 480-486

  De Kloet, Siwo R ^a  

^a Animal Genetics Inc   (United States)

Author keywords

Double stranded RNA; Phylogeny; Psittaciformes; Reovirus

Indexed keywords

DOUBLE STRANDED RNA; PRIMER DNA; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; AVIAN ORTHOREOVIRUS; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; GENOTYPE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PSITTACINE; SEQUENCE HOMOLOGY; VIROLOGY;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; DNA PRIMERS; GENOTYPE; MOLECULAR SEQUENCE DATA; ORTHOREOVIRUS, AVIAN; PHYLOGENY; PSITTACIFORMES; RNA, DOUBLE-STRANDED; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; VIRAL PROTEINS;

AVES; MIRIDAE; ORTHOREOVIRUS; PSITTACIDAE; PSITTACIFORMES;

EID: 54249105525     PISSN: 00052086     EISSN: None     Source Type: Journal    
DOI: 10.1637/8212-011908-Reg.1     Document Type: Article

References (36)

1. Akin, A., C. C. Wu, and T. L. Lin. A comparison of two RNA isolation methods for double-stranded RNA of infectious bursal disease virus. J. Virol. Methods 74:179-184. 1998.
2. Ashton, W. L. G., C. J. Randall, M. Daglass, and T. M. Eaton. Suspected reovirus associated hepatitis in parrots. Vet. Rec. 114:476-477. 1984.
3. Attoui, H., F. Billoir, P. Biagini, P. de Micco, and X. de Lamballerie. Complete sequence determination and genetic analysis of Banna virus and Kadipiro virus: proposal for assignment to a new genus (Seadornavirus) within the family Reoviridae. J. Gen. Virol. 81:1507-1515. 2000.
4. Attoui, H., F. Billoir, J. F. Cantaloube, P. Biagini, P. de Micco, and X. de Lamballerie. Strategies for the sequence determination of viral dsRNA genomes. J. Virol. Methods 89:147-158. 2000.
5. Attoui, H., Q. Fang, F. M. Jaafar, J. F. Cantaloube, P. Biagini, P. de Micco, and X. de Lamballerie. Common evolutionary origin of aquareoviruses and orthoreoviruses revealed by genome characterization of golden shiner reovirus, grass carp reovirus, striped bass reovirus and golden ide reovirus (genus Aquareovirus, family Reoviridae). J. Gen. Virol. 83:1941-1951. 2002.
6. Banyai, K., V. Palya, M. Benko, J. Bene, V. Hayasi, B. Melegh, and B. Szucs. The goose reovirus genome segment encoding the minor outer capsid protein, sigma1/sigmaC, is bicistronic and shares structural similarities with its counterpart in Muscovy duck reovirus. Virus Genes 31:285-291. 2005.
7. Benavente, J., and J. Martinez-Costas. Avian reovirus: structure and Biology. Virus Res. 123:105-119. 2007.
8. Chapell, J. D., R. Duncan, P. C. Mertens, and T. S. Dermody. Genus Orthoreovirus. In: Virus taxonomy, Eighth Report of the International Committee on Taxonomy of Viruses. C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Ball, eds. Elsevier, Amsterdam. pp. 447-446. 2005.
9. Chomczynski, P., and N. Sacchi. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:156-159. 1987.
10. Chua, K. B., G. Crameri, A. Hyatt, M. Yu, M. R. Tompang, J. Rosli, J. McEachern, S. Crameri, V. Kumarasamy, B. T. Eaton, and L. F. Wang. A previously unknown reovirus of bat origin is associated with an acute respiratory disease in humans. Proc. Natl. Acad. Sci. USA 104:11424-11429. 2007.
11. Clubb, S. L., J. M. Gaskin, and E. R. Jacobson. Psittacine reoviruses. An update including a clinical description and vaccination. In: Proc. Association of Avian Veterinarians Annual Conference, Boulder, CO. pp. 83-90. 1985.
12. Day, J. M., M. J. Pantin-Jackwood, and E. Spackman. Sequence and phylogenetic analysis of the S1 genome segment of turkey-origin reoviruses. Virus Genes 35:235-242. 2007.
13. Duncan, R., J. Corcoran, J. Shou, and D. Stoltz. Reptilian reovirus: a new fusogenic orthoreovirus species. Virology 5:131-140. 2004.
14. Graham, D. L. Characterization of a reo-like virus and its isolation and pathogenicity for parrots. Avian. Dis. 31:411-419. 1987.
15. Hillman, B. I., S. Supyani, H. Kondo, and N. Suzuki. A reovirus of the fungus Cryphonectria parasitica that is infectious as particles and related to the Coltivirus genus of animal pathogens. J. Virol. 78:894-898. 2004.
16. Hollmen, T., J. C. Franson, M. Kilpi, D. E. Docherty, W. R. Hansen, and M. Hario. Isolation and characterization of a reovirus from common eiders (Somateria mollissima). Avian. Dis. 46:478-484. 2002.
17. Huhmato, E., N. Y. Uzcategui, T. Manni, R. Munsterhjelm, M. Brummer-Korvenkontio, A. Vaheri, and O. Vapalahti. Novel orthoreovirus from a diseased crow, Finland. Emerging. Infect. Dis. 13:1967-1969. 2007.
18. Kapczynski, D. R., H. S. Sellers, V. Simmons, and S. Schultz-Cherry. Sequence analysis of the S3 gene from a turkey reovirus. Virus Genes 25:95-100. 2002.
19. Kozak, M. Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 44:283-292. 1986.
20. Lambden, P. R., S. J. Cooke, E. O. Caul, and I. N. Clarke. Cloning of noncultivatable human rotavirus by single primer amplification. J. Virol. 66:1817-1822. 1992.
21. Liu, J. L., L. H. Lee, H. W. Hsu, L. C. Kuo, and M. H. Liao. Molecular evolution of avian reovirus: evidence for genetic diversity and reassortment of the S-class genome segments and multiple cocirculating lineages. Virology 314:336-349. 2003.
22. Maniatis, T., E. F. Fritsch, and J. Sambrook. Molecular cloning, a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY. 1982.
23. Manvell, R., D. Gough, N. Major, and R. A. W. Fouchier. Mortality in budgerigars associated with a reovirus-like agent. Vet. Rec. 154:539-540. 2004.
24. Mertens, P. P. C. The ds RNA viruses. Virus Res. 101:3-13. 2004.
25. Mertens, P. P. C., S. Maan, A. Samuel, and H. Attoui. Genus Orbivirus. In: Virus taxonomy, Eighth Report of the International Committee on Taxonomy of Viruses. C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Ball, eds. Elsevier, Academic Press, San Diego. pp. 466-483. 2005.
26. Meulemans, G., D. Dekegel, R. Charlier, J. Froyman, J. van Tilburg, and P. Halen. Isolation of reoviruses from psittacine birds. J. Comp. Pathol. 83:127-134. 1983.
27. Sanchez-Cordon, P. J., J. Hervas, F. Chacon de Lara, J. Jahn, F. J. Salguero, and J. C. Gomez-Villamandos. Reovirus infection in psittacine birds (Psittacus erithacus): morphology and immunohistochemical study. Avian. Dis. 46:485-492. 2002.
28. Sellers, H. S., E. G. Linnemann, L. Pereira, and D. R. Kapczynski. Phylogenetic analysis of the sigma 2 protein gene of the turkey reoviruses. Avian Dis. 48:651-657. 2004.
29. Sharma, J. M., K. Karaca, and T. Pertile. Virus-induced immunosuppression in chickens. Poult. Sci. 73:1082-1086. 1994.
30. Smith, D. B., J. McAllister, C. Casino, and P. Simmonds. Virus 'quasispecies': making a mountain out of a molehill? J. Gen. Virol. 78:1511-1519. 1997.
31. Stefanovic, S., D. W. Rice, and J. D. Palmer. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? BMC Evol. Bio. 4:35. 2004.
32. Tamura, K., J. Dudley, M. Nei, and S. Kumar. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software, version 4.0. Mol. Biol. Evol. 10:1093. 2007.
33. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. TheClustalX windows interface: flexible strategies formultiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882. 1997.
34. Van den Brand, J. M., R. Manvell, G. Paul, M. J. Kik, and G. M. Dorrestein. Reovirus infections associated with high mortality in psittaciformes in The Netherlands. Avian. Pathol. 36:293-299. 2007.
35. Wang, Z. H., S. G. Fang, J. L. Xu, L. Y. Sun, D. W. Li, and J. L. Yu. Sequence analysis of the complete genome of rice black-streaked dwarf virus isolated from maize with rough dwarf disease. Virus Genes 27:163-168. 2003.
36. Zhang, Y., M. Liu, Q. Hu, S. Ouyang, and G. Tong. Characterization of the sigma C-encoding gene from muscovy duck reovirus. Virus Genes 32:165-170. 2006.