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Volumn 426, Issue 1-2, 2008, Pages 39-46

The origin of genes could be polyphyletic

Author keywords

Archaea; Bacteria; Eukarya; LUCA; Motifs of the domains of life; Trans splicing

Indexed keywords

DNA; DNA BINDING PROTEIN; MESSENGER RNA;

EID: 54049122120     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2008.07.024     Document Type: Article
Times cited : (16)

References (24)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 0033105094 scopus 로고    scopus 로고
    • Conserved domains in DNA repair proteins and evolution of repair systems
    • Aravind L., Walkers D.R., and Koonin E.K. Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res. 27 (1999) 1223-1242
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1223-1242
    • Aravind, L.1    Walkers, D.R.2    Koonin, E.K.3
  • 3
    • 0027067096 scopus 로고
    • On the origin of the transfer RNA molecule
    • Di Giulio M. On the origin of the transfer RNA molecule. J. Theor. Biol. 159 (1992) 199-214
    • (1992) J. Theor. Biol. , vol.159 , pp. 199-214
    • Di Giulio, M.1
  • 4
    • 0028857719 scopus 로고
    • Was it an ancient gene codifying for a hairpin RNA that, by means of direct duplication, gave rise to the primitive tRNA molecule?
    • Di Giulio M. Was it an ancient gene codifying for a hairpin RNA that, by means of direct duplication, gave rise to the primitive tRNA molecule?. J. Theor. Biol. 177 (1995) 95-101
    • (1995) J. Theor. Biol. , vol.177 , pp. 95-101
    • Di Giulio, M.1
  • 5
    • 0033531780 scopus 로고    scopus 로고
    • The non-monophyletic origin of tRNA molecule
    • Di Giulio M. The non-monophyletic origin of tRNA molecule. J. Theor. Biol. 197 (1999) 403-414
    • (1999) J. Theor. Biol. , vol.197 , pp. 403-414
    • Di Giulio, M.1
  • 6
    • 0345276409 scopus 로고    scopus 로고
    • The origin of the tRNA molecule: implications for the origin of protein synthesis
    • Di Giulio M. The origin of the tRNA molecule: implications for the origin of protein synthesis. J. Theor. Biol. 226 (2004) 89-93
    • (2004) J. Theor. Biol. , vol.226 , pp. 89-93
    • Di Giulio, M.1
  • 7
    • 33646248891 scopus 로고    scopus 로고
    • The non-monophyletic origin of the tRNA molecule and the origin of genes only after the evolutionary stage of the Last Universal Common Ancestor (LUCA)
    • Di Giulio M. The non-monophyletic origin of the tRNA molecule and the origin of genes only after the evolutionary stage of the Last Universal Common Ancestor (LUCA). J. Theor. Biol. 240 (2006) 343-352
    • (2006) J. Theor. Biol. , vol.240 , pp. 343-352
    • Di Giulio, M.1
  • 8
    • 33746903166 scopus 로고    scopus 로고
    • Nanoarchaeum equitans is a living fossil
    • Di Giulio M. Nanoarchaeum equitans is a living fossil. J. Theor. Biol. 242 (2006) 257-260
    • (2006) J. Theor. Biol. , vol.242 , pp. 257-260
    • Di Giulio, M.1
  • 9
    • 48349142638 scopus 로고    scopus 로고
    • Split genes, ancestral genes
    • Tze-Fei Wong J., and Lazcano A. (Eds), Landes Bioscience Publisher, Texas, USA
    • Di Giulio M. Split genes, ancestral genes. In: Tze-Fei Wong J., and Lazcano A. (Eds). Prebiotic Evolution and Astrobiology (2008), Landes Bioscience Publisher, Texas, USA
    • (2008) Prebiotic Evolution and Astrobiology
    • Di Giulio, M.1
  • 10
    • 33645456207 scopus 로고    scopus 로고
    • Eukaryotic evolution, changes and challenges
    • Embley T.M., and Martin W. Eukaryotic evolution, changes and challenges. Nature 440 (2006) 623-630
    • (2006) Nature , vol.440 , pp. 623-630
    • Embley, T.M.1    Martin, W.2
  • 11
    • 24744450331 scopus 로고    scopus 로고
    • The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells
    • Forterre P. The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells. Biochimie. 87 (2005) 793-803
    • (2005) Biochimie. , vol.87 , pp. 793-803
    • Forterre, P.1
  • 12
    • 33644859575 scopus 로고    scopus 로고
    • Three RNA cells for ribosomal lineages and three DNA virus to replicate their genomes: a hypothesis for the origin of cellular domain
    • Forterre P. Three RNA cells for ribosomal lineages and three DNA virus to replicate their genomes: a hypothesis for the origin of cellular domain. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 3669-3674
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 3669-3674
    • Forterre, P.1
  • 14
    • 45449093194 scopus 로고    scopus 로고
    • Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5′ and 3′ tRNA halves
    • Fujishima K., Sugahara J., Tomita M., and Kanai A. Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5′ and 3′ tRNA halves. PLoS ONE 3 2 (2008) e1622
    • (2008) PLoS ONE , vol.3 , Issue.2
    • Fujishima, K.1    Sugahara, J.2    Tomita, M.3    Kanai, A.4
  • 15
    • 33646726959 scopus 로고    scopus 로고
    • Genomics and the irreducible nature of eukaryote cells
    • Kurland C.G., Collins L.J., and Penny D. Genomics and the irreducible nature of eukaryote cells. Science 312 (2006) 1011-1014
    • (2006) Science , vol.312 , pp. 1011-1014
    • Kurland, C.G.1    Collins, L.J.2    Penny, D.3
  • 16
    • 0033199713 scopus 로고    scopus 로고
    • Did DNA replication evolve twice independently?
    • Leipe D.D., Aravind L., and Kooni E.V. Did DNA replication evolve twice independently?. Nucleic Acids Res. 27 (1999) 3389-3401
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3389-3401
    • Leipe, D.D.1    Aravind, L.2    Kooni, E.V.3
  • 17
    • 0029789824 scopus 로고    scopus 로고
    • A minimal gene set for cellular life derived by comparison of complete bacterial genomes
    • Mushegian A.R., and Koonin E.V. A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 10268-10273
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 10268-10273
    • Mushegian, A.R.1    Koonin, E.V.2
  • 18
    • 19544385261 scopus 로고    scopus 로고
    • Modern mRNA proofreading and repair: clues that the last universal ancestor possessed an RNA genome?
    • Poole A.M., and Logan D.T. Modern mRNA proofreading and repair: clues that the last universal ancestor possessed an RNA genome?. Mol. Biol. Evol. 22 (2005) 1444-1455
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1444-1455
    • Poole, A.M.1    Logan, D.T.2
  • 19
    • 33846632221 scopus 로고    scopus 로고
    • Evaluating hypotheses for the origin of eukaryotes
    • Poole A.M., and Penny D. Evaluating hypotheses for the origin of eukaryotes. Bioessays 29 (2006) 74-84
    • (2006) Bioessays , vol.29 , pp. 74-84
    • Poole, A.M.1    Penny, D.2
  • 20
    • 13444251251 scopus 로고    scopus 로고
    • Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′- and 3′-halves
    • Randau L., Munch R., Hohn M., Jahn D., and Soll D. Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′- and 3′-halves. Nature 433 (2005) 537-541
    • (2005) Nature , vol.433 , pp. 537-541
    • Randau, L.1    Munch, R.2    Hohn, M.3    Jahn, D.4    Soll, D.5
  • 21
    • 4544313053 scopus 로고    scopus 로고
    • The ring of life provides evidence for a genome fusion origin of eukaryotes
    • Rivera M.C., and Lake J.A. The ring of life provides evidence for a genome fusion origin of eukaryotes. Nature 431 (2004) 152-155
    • (2004) Nature , vol.431 , pp. 152-155
    • Rivera, M.C.1    Lake, J.A.2
  • 22
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 23
    • 3042847118 scopus 로고    scopus 로고
    • The archaeal concept and the world it lives in: a retrospective
    • Woese C.R. The archaeal concept and the world it lives in: a retrospective. Photosynthes. Res. 80 (2004) 361-372
    • (2004) Photosynthes. Res. , vol.80 , pp. 361-372
    • Woese, C.R.1
  • 24
    • 0034053846 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthetase, the genetic code, and evolutionary process
    • Woese C.R., Olsen G.J., Ibba M., and Soll D. Aminoacyl-tRNA synthetase, the genetic code, and evolutionary process. Microbiol. Mol. Biol. Rev. 64 (2000) 202-236
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , pp. 202-236
    • Woese, C.R.1    Olsen, G.J.2    Ibba, M.3    Soll, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.