Re-evaluation of the model-free analysis of fast internal motion in proteins using NMR relaxation

Journal of Physical Chemistry B

Volumn 112, Issue 38, 2008, Pages 12095-12103

  Frederick, Kendra King ^a   Sharp, Kim A ^a   Warischalk, Nicholas ^a   Wand, A Joshua ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINES; AMINO ACIDS; CALCIUM; CORRELATION METHODS; DEUTERIUM; DISSOLUTION; ENZYMES; HYDROCARBONS; NITRIC OXIDE; NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; ORGANIC ACIDS; OXIDES; PROTEINS; RHENIUM; RHENIUM COMPOUNDS; SENSITIVITY ANALYSIS; SUPRAMOLECULAR CHEMISTRY;

CALMODULIN-BINDING DOMAIN; CONFORMATIONAL ENTROPY; CORRELATION TIME; DEUTERIUM RELAXATION; ENDOTHELIAL NITRIC-OXIDE SYNTHASE; GENERALIZED ORDER; HIGH AFFINITY BINDING; INTERNAL MOTIONS; METHYL GROUPS; MICROSCOPIC DISTRIBUTION; MODEL-FREE; NEURONAL NITRIC-OXIDE SYNTHASE; NMR RELAXATION; PROTEIN FUNCTIONS; RE-EVALUATION; SIDE CHAINS; SPIN RELAXATION; STRUCTURAL PARAMETERS; TEMPORAL ASYMMETRY; TIME CONSTANTS;

LIGHT MEASUREMENT;

EID: 53849092076     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp8038576     Document Type: Article

References (45)

1. Igumenova, T. I.; Frederick, K. K.; Wand, A. J. Chem. Rev. 2006, 106, 1672.
2. Millet, O.; Muhandiram, D. R.; Skrynnikov, N. R.; Kay, L. E. J. Am. Chem. Soc. 2002, 124, 6439.
3. Muhandiram, D. R.; Yamazaki, T.; Sykes, B. D.; Kay, L. E. J. Am. Chem. Soc. 1995, 117, 11536.
4. Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4546.
5. Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4559.
6. Jarymowycz, V. A.; Stone, M. J. Chem. Rev. 2006, 106, 1624.
7. Meirovitch, E.; Shapiro, Y. E.; Polimeno, A.; Freed, J. H. J. Phys. Chem. B 2007, 111, 12865.
8. Meirovitch, E.; Polimeno, A.; Freed, J. H. J. Phys. Chem. B 2006, 110, 20615.
9. Meirovitch, E.; Shapiro, Y. E.; Polimeno, A.; Freed, J. H. J. Phys. Chem. A 2006, 110, 8366.
10. Meirovitch, E.; Shapiro, Y. E.; Liang, Z. C.; Freed, J. H. J. Phys. Chem. B 2003, 107, 9898.
11. Tugarinov, V.; Liang, Z. C.; Shapiro, Y. E.; Freed, J. H.; Meirovitch, E. J. Am. Chem. Soc. 2001, 123, 3055.
12. Frederick, K. K.; Marlow, M. S.; Valentine, K. G.; Wand, A. J. Nature 2007, 448, 325.
13. Brokx, R. D.; Lopez, M. M.; Vogel, H. J.; Makhatadze, G. I. J. Biol. Chem. 2001, 276, 14083.
14. Urbauer, J. L.; Short, J. H.; Dow, L. K.; Wand, A. J. Biochemistry 1995, 34, 8099.
15. Seeholzer, S. H.; Wand, A. J. Biochemistry 1989, 28, 4011.
16. Muhandiram, D. R.; Kay, L. E. J. Magn. Reson., Ser. B 1994, 103, 203.
17. Montelione, G. T.; Lyons, B. A.; Emerson, S. D.; Tashiro, M. J. Am. Chem. Soc. 1992, 114, 10974.
18. Uhrin, D.; Uhrinova, S.; Leadbeater, C.; Nairn, J.; Price, N. C.; Barlow, P. N. J. Magn. Reson. 2000, 142, 288.
19. Neri, D.; Szyperski, T.; Otting, G.; Senn, H.; Wuthrich, K. Biochemistry 1989, 28, 7510.
20. Bax, A.; Delaglio, F.; Grzesiek, S.; Vuister, G. W. J. Biomol. NMR 1994, 4, 787.
21. Goddard, T.; Kneller, D. SPARKY 3; University of California: San Francisco, CA, 2004.
22. Farrow, N. A.; Muhandiram, R.; Singer, A. U.; Pascal, S. M.; Kay, C. M.; Gish, G.; Shoelson, S. E.; Pawson, T.; Forman-Kay, J. D.; Kay, L. E. Biochemistry 1994, 33, 5984.
23. Dellwo, M. J.; Wand, A. J. J. Am. Chem. Soc. 1989, 111, 4571.
24. Kneller, J. M.; Lu, M.; Bracken, C. J. Am. Chem. Soc. 2002, 124, 1852.
25. Lee, A. L.; Wand, A. J. J. Biomol. NMR 1999, 13, 101.
26. Ottiger, M.; Bax, A. J. Am. Chem. Soc. 1998, 120, 12334.
27. Mittermaier, A.; Kay, L. E. J. Am. Chem. Soc. 1999, 121, 10608.
28. Nicholls, A.; Sharp, K. A.; Honig, B. Proteins 1991, 11, 281.
29. Abragam, A. Principles of nuclear magnetism; Clarendon Press: Oxford, 1961.
30. Hoffman, R. A. Adv. Magn. Reson. 1970, 4, 88.
31. Jacobsen, J. P.; Bildsoe, H. K.; Schaumburg, K. J. Magn. Reson. 1976, 23, 153.
32. Chatfield, D. C.; Szabo, A.; Brooks, B. R. J. Am. Chem. Soc. 1998, 120, 5301.
33. Schneider, D. M.; Dellwo, M. J.; Wand, A. J. Biochemistry 1992, 31, 3645.
34. Lee, A. L.; Wand, A. J. Nature 2001, 411, 501.
35. Lee, A. L.; Sharp, K. A.; Kranz, J. K.; Song, X. J.; Wand, A. J. Biochemistry 2002, 41, 13814.
36. Song, X. J.; Flynn, P. F.; Sharp, K. A.; Wand, A. J. Biophys. J. 2007, 92, L43.
37. Lee, A. L.; Kinnear, S. A.; Wand, A. J. Nat. Struct. Biol. 2000, 7, 72.
38. Frederick, K. K.; Kranz, J. K.; Wand, A. J. Biochemistry 2006, 45, 9841.
39. Marlow, M. S.; Wand, A. J. Biochemistry 2006, 45, 8732.
40. Polimeno, A.; Freed, J. H. J. Phys. Chem. 1995, 99, 10995.
41. Otting, G.; Liepinsh, E.; Wuthrich, K. Science (New York, N.Y) 1991, 254, 974.
42. Yang, D. W.; Kay, L. E. J. Magn. Reson., Ser B 1996, 110, 213.
43. Prabhu, N. V.; Lee, A. L.; Wand, A. J.; Sharp, K. A. Biochemistry 2003, 42, 562.
44. Aoyagi, M.; Arvai, A. S.; Tainer, J. A.; Getzoff, E. D. EMBO J. 2003, 22, 766.
45. DeLano, W. L.; The PyMOL molecular graphics system; DeLano Scientific: San Carlos, CA, 2002.