Phylogenetic position of Chionomys gud assessed from a complete cytochrome b gene

Folia Zoologica

Volumn 57, Issue 3, 2008, Pages 274-282

  Bužan, Elena V ^a   Kryštufek, Boris ^a  

^a V deckovýzkumné centrum v Koperu)   (Slovakia)

Author keywords

Arvicolidae; Bayesian method; Microtus; molecular phylogeny

Indexed keywords

GENETIC ANALYSIS; KARYOLOGY; MORPHOLOGY; PHYLOGENY; RODENT; TOPOLOGY;

ARVICOLINAE; BLANFORDIMYS; CHIONOMYS; CHIONOMYS GUD; CHIONOMYS NIVALIS; CHIONOMYS ROBERTI; MICROTUS; MICROTUS GREGALIS; MURIDAE;

EID: 53549122265     PISSN: 01397893     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (47)

1. Agadzhanjan A.K. & Jatsenko V.N. 1984: Filogeneticheskie svjazi polevok severnoj Evrazii [Phylogenetic relationships of voles in Nothern Eurasia]. Archives Zool. Mus. Moscow State Univ. 22: 135-190 (in Russian).
2. Anisimova M. & Gascuel O. 2006: Approximate likelihood ratio test for branches: A fast, accurate and powerful alternative. Syst. Biol. 55: 539-552.
3. Baldauf S.L. 2003: Phylogeny for the faint of heart. Trends in Genetics 19: 345-351.
4. Brunhoff C. Yoccoz N.G., Ims R.A. & Jaarola M. 2006: Glacial survival or late glacial colonization? Phylogeography of the root vole (Microtus oeconomus) in north-west Norway. J. Biogeograpliy 33: 2136-2144.
5. Buzan E.V., Kryštufek B., Hänfling B. & Hutchinson W.F. 2008: Mitochondrial phylogeny of Arvicolinae using comprehensive taxonomic sampling yields new insights. Biol. J. Linn. Soc: 94: 825-835.
6. Chaline J. 1987: Arvicolid data (Arvicolidae, Rodentia) and evolutionary concepts. Evol. Biol. 21: 237-310.
7. Chaline J. & Graf J.-D. 1988: Phylogeny of the Arvicolidae (Rodentia): Biochemical and paleontological evidence. J. Mammal. 69: 22-33.
8. Conroy C.J. & Cook J.A. 1999: MtDNA evidence for repeated pulses of speciation within arvicoline and murid rodents. J. Mamm. Evol. 6: 221-245.
9. Conroy C.J. & Cook J.A. 2000: Molecular systematics of a holarctic rodent (Microtus: Muridae). J. Mammal. 81:344-359.
10. Conroy C.J., Hortelano Y., Cervantes F.A. & Cook J.A. 2001: The phylogenetic position of southern relictual species of Microtus (Muridae: Rodentia) in North America. Mamm. Biol. 66: 332-344.
11. Dekonenko A., Yakimenko V., Ivanov A., Morozov V, Nikitin P., Khasanova S., Dzagurova T., Tkachenko E. & Schmaljohn C. 2003: Genetic similarity of Puumala viruses found in Finland and Western Siberia and of the mitochondrial DNA of their rodent hosts suggests a common evolutionary origin. Gen. & Evol. 3: 245-257.
12. Ewing B., Hillier L., Wendl M.C. & Green P. 1998: Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Gen. Res. 8: 175-185.
13. Filippucci M.G., Fadda V., Krystufek B., Simson S. & Amori G. 1991 : Allozyme variation and differentiation in Chionomys nivalis (Martins, 1842). Acta Theriol. 36: 47-62.
14. Galewski T., Tilak M., Sanchez S., Chevret P., Paradis E. & Douzery E.J.P. 2006: The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies. Bmc Evol. Biol. 6: 1-17.
15. Graf J.-D. 1982: Génétique, biochemique, Zoogeographie et taxonomie des Arvicolidae (Mammalia, Rodentia). Rev. Suisse Zool. 89: 749-787.
16. Gromov I.M. & Polyakov 1.Ya. 1992: Fauna of the USSR: Mammals: Voles (Microtinae). E.J. Brill. Leiden.
17. Guindon S. & Gascuel O. 2003: A simple, fast, and accurate algorithm to estimate phylogenies by maximum likelihood. Syst. Biol. 52: 696-704.
18. Hall T. 2004: Bioedit 7.0.0. North Carolina State University, Raleigh.
19. Haynes S., Jaarola M. & Searle J.B. 2003: Phylogeography of the common vole (Microtus arvalis) with particular emphasis on the colonization of the Orkney archipelago. Molecular Ecology 12: 951-956.
20. Huelsenbeck J.P. & Ronquist F. 2001 : MrBayes: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
21. Irwin D.M., Kocher T.D. & Wilson A.C. 1991: Evolution of the cytochrome b gene of mammals. J. Mol. Evol. 32: 128-144.
22. Jaarola M. & Searle J.B. 2002: Phylogeography of field voles (Microtus agrestis) in Eurasia inferred from mitochondrial DNA sequences. Molecular Ecology 11: 2613-2621.
23. Jaarola M., Martínková N., Gündüz I., Brunhoff C., Zima J., Nadachowski A., Amori G., Bulatova N.S., Chondropoulos B., Fraguedakis-Tsolis S., González-Esteban J., López-Fuster M.J., Kandaurov A.S., Kefelioglu H., Mathias M.D., Villate I. & Searle J.B. 2004: Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences. Mol. Phylogen. Evol. 33:647-663.
24. Kretzoi M. 1969: Skizze einer Arvicoliden-Phylogenie. Vert. Hung. 11: 155-193.
25. Kryštufek B. & Vohralík V. 2004: Mammals of Turkey and Cyprus. Rodentia I: Sciuridae, Dipodidae, Gliridae, Arvicolinae. Univerza na Primorskem, Koper.
26. Martínková N., Zima J., Jaarola M., Macholán M. & Spitzenberger F. 2007: The origin and phylogenetic relationships of Microtus bavaricus based on karyotype and mitochondrial DNA sequences. Folia Zool. 56: 39-49.
27. Mau B., Newton M.A. & Larget B. 1999: Bayesian phylogenetic inference via Markov Chain Monte Carlo methods. Biometrics 55: 1-12.
28. th Ser. 1: 97-193.
29. Mezhzherin S.V., Zykov A.E. & Morozov-Leonov S.Yu. 1993: Biochemical variation and genetic divergence of Palearctic voles (Arvicolidae). Meadow voles, Microtus Schrank, 1798, snow voles. Chionomys Miller, 1908, water voles Arvicola Lacepede, 1799. Genetika 29: 28-41.
30. Mezhzherin S.V., Morozov-Leonov S.Yu. & Kuznetsova I.A. 1995: Biochemical variation and genetic divergence in Palearctic voles (Arvicolidae): Subgenus Terricola, true lemmings Lemmus Link 1795, pied lemmings Dicrostonyx Gloger 1841, steppe lemmings Lagurus Gloger 1842, mole voles Ellobius Fischeer von Waldheim 1814. Genetika 31: 788-797.
31. Musser G.G. & Carleton M.D. 2005: Superfamily Muroidea. In: Wilson D.E. & Reeder D.-A.M. (eds), Mammal Species of the World. A Taxonomic and Geographic Reference. 3rd edn, Vol. 2. John Hopkins University Press, Baltimore: 894-1531.
32. Nadachowski A. 1990: On the taxonomic status of Chionomys Miller, 1908 (Rodentia: Mammalia) from southern Anatolia (Turkey). Acta Zool. Cracov. 33: 79-89.
33. Nadachowski A. 1991: Systematics, geographic variation, and evolution of snow voles (Chionomys) based on dental characters. Acta Theriol. 36: 1-45.
34. Pavlinov I.J. & Rossolimo O.L. 1987: [Systematics of mammals of the USSR]. Izdatel'stvo Moskovskogo universiteta, Moskva (in Russian).
35. Pavlinov I.J. & Rossolimo O.L. 1998: [Systematics of mammals of the USSR]. Izdatel'stvo Moskovskogo universiteta. Moskva (in Russian).
36. Pietsch M. 1980: Biometrische Analyse an Schädeln von neun Kleinsäuger-Arten aus der Familie Arvicolidae (Rodentia). Z. zool. Syst. Evolut.-forsch. 18: 196-211.
37. Posada D. & Crandall K.A. 1998: Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
38. Rannala B. & Yang Z. 1996: Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43: 304-311.
39. Shenbrot G.I. & Krasnov B.R. 2005: An atlas of the geographic distribution of the arvicoline rodents of the World (Rodentia, Muridae, Arvicolinae). Pensofi, Sofia.
40. Tamura K., Dudley J., Nei M. & Kumar S. 2007: MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. & Evol. 24: 1596-1599.
41. Thompson J.D., Gibson T.J., Plewniak F.. Jeanmougin F. & Higgins D.G. 1997: The CLUSTAL-windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nuc. Acid Res. 25: 4876-4882.
42. Tougard C., Montuire S., Brunet-Lecomte R & Fabre M. 2008: Speciation of two allopatric Terricola species (Arvicolinae, Rodentia) from molecular and morphological data. Biol. J. Linn. Soc: 93: 309-323.
43. Vereshchagin N.K. 1967: The mammals of the Caucasus, a natural history of the evolution of the fauna. Israel Program for Scientific Translations. Jerusalem.
44. Xia X. 2000: Data analysis in molecular biology and evolution. Kluwer Academic Publishers, Boston.
45. Xia X. & Xie Z. 2001: DAMBE: Data analysis in molecular biology and evolution. J. Heredity 92: 371-373.
46. Yang Z. & Rannala B. 1997: Bayesian Phylogenetic Inference Using DNA Sequences: A Markov Chain Monte Carlo Method. Mol. Biol. & Evol. 14: 717-724.
47. Zima J. & Krái B. 1984: Karyotypes of European mammals. Acta Sc. Nat. Brno 18(8): 1-62.