DNA-methylation alterations and exchanges during in vitro cellular differentiation in rose (Rosa hybrida L.)

Theoretical and Applied Genetics

Volumn 109, Issue 5, 2004, Pages 899-910

  Xu, Mingliang ^a,b   Li, Xiangqian ^a,c   Korban, Schuyler S ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALKYLATION; GENES; GREENHOUSE EFFECT; ORGANIC POLYMERS; TISSUE;

CYTOCINES; METHYLATION; ORGANOGENIC CALLUS; VITROCELLULAR DIFFERENCE;

DNA;

CYTOSINE;

AMINO ACID SEQUENCE; ARTICLE; CELL DIFFERENTIATION; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA METHYLATION; DNA SEQUENCE; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEIC ACID AMPLIFICATION; ORGANOGENESIS; PHYSIOLOGY; PRENATAL DEVELOPMENT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; ROSE; SOUTHERN BLOTTING;

AMINO ACID SEQUENCE; BLOTTING, SOUTHERN; CELL DIFFERENTIATION; CLUSTER ANALYSIS; CYTOSINE; DNA METHYLATION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; ORGANOGENESIS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; ROSA; SEQUENCE ANALYSIS, DNA;

ROSA; ROSA HYBRID CULTIVAR;

EID: 5344273905     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-004-1717-6     Document Type: Article

References (45)

1. Arnholdt-Schmitt B (1995) Physiological aspects of genome variability in tissue culture. I. Growth phase-dependent quantitative variability of repetitive BstN I fragments of primary cultures of Daucus carota L. Theor Appl Genet 91:816-823
2. Bartee L, Malagnac F, Bender J (2001) Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev 15:1753-1758
3. Brown PTH (1989) DNA methylation in plants and its role in tissue culture. Genome 31:717-729
4. Cervera M-T, Ruiz-García L, Martínez-Zapater JM (2002) Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Gen Genomics 268:543-552
5. Chaillet JR, Vogt TV, Beier DR, Leder P (1991) Parental-specific methylation of an imprinted transgene is established during gametogenesis and progressively changes during embryogenesis. Cell 66:77-83
6. Chakrabaty D, Yu KW, Paek KY (2003) Detection of DNA methylation changes during somatic embryogenesis of Siberian ginseng (Eleuterococcus senticosus). Plant Sci 165:61-68
7. Chory J, Chatterjee M, Cook RK, Elich T, Fankhauser C, Li J, Najpal P, Neff M, Pepper A, Poole D, Reed J, Vitart V (1996) From seed germination to flowering, light controls plant development via the pigment phytochrome. Proc Natl Acad Sci USA 93:12066-12071
8. Delbreil B, Jullien M (1994) Evidence for in vitro induced mutation which improves somatic embryogenesis in Asparagus officinalis L. Plant Cell Rep 13:372-376
9. Diaz-Sala C, Rey M, Boronat A, Besford R, Rodriguez R (1995) Variation in the DNA methylation and polypeptide patterns of adult hazel (Corylus avellana L.) associated with sequential in vitro subcultures. Plant Cell Rep 15:218-221
10. Duncan RP (1997) Tissue culture-induced variation and crop improvement. Adv Agron 58:201-240
11. Ferguson-Smith AC, Surani MA (2001) Imprinting and the epigenetic asymmetry between parental genomes. Science 293:1086-1089
12. Finnegan EJ (2001) Is plant gene expression regulated globally? Trends Genet 17:361-365
13. Goldberg RB, Barker SJ, Perez-Grau L (1989) Regulation of gene expression during plant embryogenesis. Cell 56:149-160
14. Gruenbaum Y, Naveh-Many T, Cedar H, Razin A (1981) Sequence specificity of methylation in higher plant DNA. Nature 292:860-862
15. Hecht V, Vielle-Calzada J-P, Hartog MV, Schmidt EDL, Boutilier K, Grossniklaus U, de Vries SC (2001) The Arabidopsis somatic embryogenesis receptor dinase 1 gene is expression in developing ovules and embryos and enhances embryogenic competence in culture. Plant Physiol 127:803-816
16. Herman EB (1991) Recent advances in plant tissue culture, regeneration, micro-propagation and media 1988-1991. Ethylene, DNA methylation and regeneration. Agritech. Consultant, Shrub Oak, pp 6-10
17. Kaeppler SM, Phillips RL (1993a) DNA methylation and tissue culture-induced variation in plants. In Vitro Cell Dev Biol 29:125-130
18. Kaeppler SM, Phillips RL (1993b) Tissue culture-induced DNA methylation variation in maize. Proc Natl Acad Sci USA 90:8773-8776
19. Kaeppler SM, Kaeppler HF, Rhee Y (2000) Epigenetic aspects of somaclonal variation in plants. Plant Mol Biol 43:179-188
20. Knox MR, Ellis THN (2001) Stability and inheritance of methylation states at PstI sites in Pisum. Mol Genet Gen 265:497-507
21. Li X, Xu M, Korban SS (2002a) DNA methylation profiles differ between field- and in vitro-grown leaves of apples. J Plant Physiol 159:1229-1234
22. Li X, Krasnyanski S, Korban SS (2002b) Somatic embryogenesis, secondary somatic embryogenesis, and shoot organogenesis in Rosa. Plant Physiol 159:313-319
23. LoSchiavo F, Pitto L, Giuliano G, Torti G, Nuti-Ronchi V, Marazziti D, Vergara R, Orselli S, Terzi M (1989) DNA methylation of embryogenic carrot cell cultures and its variations as caused by mutation, differentiation, hormones and hypomethylating drugs. Theor Appl Genet 77:325-331
24. Matthes M, Singh R, Cheah SC, Karp A (2001) Variation in oil palm (Elaeis guineensis Jacq.) tissue culture-derived regenerants revealed by AFLPs with methylation-sensitive enzymes. Theor Appl Genet 102:971-979
25. McClelland M, Nelson M, Raschke E (1994) Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res 22:3640-3659
26. Monk M, Boulebelik M, Lehnert S (1987) Temporal and regional changes in DNA methylation in the embryogenic, extraembryonic and germ cell lineages during mouse embryo development. Development 99:371-382
27. Mumm RH, Dudley JW (1995) A PC SAS computer program to generate a dissimilarity matrix for cluster analysis. Crop Sci 35:925-927
28. Munksgaard D, Mattsson O, Okkels FT (1995) Somatic embryo development in carrot is associated with an increase in levels of S-adenosylmethionine, S-adenosylhomocysteine and DNA methylation. Plant Physiol 93:5-10
29. Mustilli AC, Bowler C (1997) Tuning in to the signals controlling photoregulated gene expression in plants. EMBO J 16:5801-5806
30. Mustilli AC, Fenzi F, Ciliento R, Alfano F, Bowler C (1999) Phenotype of the tomato high pigment-2 mutant is caused by a mutation in the tomato homolog of DEETIOLATED1. Plant Cell 11:145-157
31. Ng HH, Bird AP (1999) DNA methylation and chromatin modification. Curr Opin Genet Dev 9:158-163
32. Okkels FT (1988) A theory explaining formation of somatic embryogenic cells by auxin induced inhibition of DNA methylation. Plant Physiol 73:11
33. Pavlica M, Nagy B, Papes D (1991) 2,4-D causes chromosome and chromatin abnormalities in plant cells and mutation in cultured mammalian cells. Mutat Res 263:77-82
34. Reyna-López GE, Simpson J, Ruiz-Herrera J (1997) Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. Mol Gen Genet 253:703-710
35. Ronchi VN, Martini G, Buiatti M (1976) Genotype-hormone interaction in the induction of chromosome aberrations: effect of 2,4-dichlorophenoxyacetic acid (2,4-D) and kinetin on tissues from Nicotiana spp. Mutat Res 36:67-72
36. Rossi V, Motto M, Pellegrin L (1997) Analysis of the methylation pattern of the maize Opaque-2 (O2) promoter and in vitro binding studies indicate that the O2 B-Zip protein and other endosperm factors can bind to methylated target sequences. J Biol Chem 272:13758-13765
37. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory mannual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
38. Stam M, Mol JNM, Kooter JM (1997) The silence of genes in transgenic plants. Ann Bot 79:3-12
39. Stancheva I, Maarri O, Walter J, Niveleau A, Meehan R (2002) DNA methylation at promoter regions regulates the timing of gene activation in Xenopus laevis embryos. Dev Biol 243:155-165
40. Sung ZR, Fienberg A, Chorneau R, Borkird C, Furner I, Smith J, Terzi M, Loschiavo F, Giuliano G, Pitto L, Nuti-Ronchi V (1984) Developmental biology of embryogenesis from carrot culture. Plant Mol Biol Rep 2: 216-218
41. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-813
42. Wolffe AP, Matzke MA (1999) Epigenetics: regulation through repression. Science 286:481-486
43. Xiong LZ, Xu CG, Saghai-Maroof MA (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet 261:439-446
44. Xu ML, Li XQ, Korban SS (2000) AFLP-based detection of DNA methylation. Plant Mol Biol Rep 18:361-368
45. Xu ML, Ernesto H, Korban SS (2001) Development of sequence-characterized amplified regions (SCAR) from amplified fragment length polymorphism (AFLP) markers tightly linked to the Vf gene in apple. Genome 44:63-70