-
1
-
-
84860666102
-
-
http://www.mathworks.com/access/helpdesk/help/toolbox/simbio/.
-
-
-
-
2
-
-
84860666103
-
-
http://www.basis.ncl.ac.uk/index.html.
-
-
-
-
3
-
-
84860670977
-
-
http://www.obigrid.org/OBIGrid/.
-
-
-
-
4
-
-
84860681810
-
-
http://www.bionessie.org/.
-
-
-
-
5
-
-
84860670980
-
-
http://sbml.org/software/libsbml/.
-
-
-
-
6
-
-
84860681811
-
-
http://lcg.web.cern.ch/LCG/.
-
-
-
-
7
-
-
84860671341
-
-
http://ws.apache.org/axis2/.
-
-
-
-
8
-
-
84860666105
-
-
http://www.globus.org.
-
-
-
-
9
-
-
84860671340
-
-
http://saml.xml.org/.
-
-
-
-
10
-
-
71549138571
-
-
Myproxy credential management service. myproxy.ncsa.uiuc.edu
-
Myproxy credential management service. myproxy.ncsa.uiuc.edu.
-
-
-
-
11
-
-
71549121228
-
Managing dynamic user communities in a grid of autonomous resources
-
R. Alfieri, R. Cecchini, V. Ciaschini, L. dell'Agnello, A. Gianoli, F. Spataro, F. Bonnassieux, P. Broadfoot, G. Lowe, L. Cornwall, J. Jensen, D. Kelsey, A. Frohner, D. L. Groep, W. S. de Cerff, M. Steenbakkers, G. Venekamp, D. Kouril, A. McNab, O. Mulmo, M. Silander, J. Hahkala, and K. Lhorentey. Managing dynamic user communities in a grid of autonomous resources. CHEP 2003, 2003.
-
(2003)
CHEP 2003
-
-
Alfieri, R.1
Cecchini, R.2
Ciaschini, V.3
dell'Agnello, L.4
Gianoli, A.5
Spataro, F.6
Bonnassieux, F.7
Broadfoot, P.8
Lowe, G.9
Cornwall, L.10
Jensen, J.11
Kelsey, D.12
Frohner, A.13
Groep, D.L.14
de Cerff, W.S.15
Steenbakkers, M.16
Venekamp, G.17
Kouril, D.18
McNab, A.19
Mulmo, O.20
Silander, M.21
Hahkala, J.22
Lhorentey, K.23
more..
-
12
-
-
71549117471
-
Calibayes: Integration of grid based simulation and data resources for bayesian calibration of biological models
-
R. Boys, D. Henderson, T. Kirkwood, D. Wilkinson, and W. E. Wolski. Calibayes: Integration of grid based simulation and data resources for bayesian calibration of biological models. BMC Bioinformatics, 6(3):14, 2005.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.3
, pp. 14
-
-
Boys, R.1
Henderson, D.2
Kirkwood, T.3
Wilkinson, D.4
Wolski, W.E.5
-
13
-
-
84958662607
-
Mathematical modeling of the influence of rkip on the erk signaling pathway
-
London, UK, Springer-Verlag
-
K.-H. Cho, S.-Y. Shin, H. W. Kim, O. Wolkenhauer, B. McFerran, and W. Kolch. Mathematical modeling of the influence of rkip on the erk signaling pathway. In CMSB '03: Proceedings of the First International Workshop on Computational Methods in Systems Biology, pages 127-141, London, UK, 2003. Springer-Verlag.
-
(2003)
CMSB '03: Proceedings of the First International Workshop on Computational Methods in Systems Biology
, pp. 127-141
-
-
Cho, K.-H.1
Shin, S.-Y.2
Kim, H.W.3
Wolkenhauer, O.4
McFerran, B.5
Kolch, W.6
-
14
-
-
20144389891
-
Grid cellware: The first grid-enabled tool for modelling and simulating cellular processes
-
P. K. Dhar, T. C. Meng, S. Somani, L. Ye, K. Sakharkar, A. Krishnan, A. B. Ridwan, S. H. K. Wah, M. Chitre, and Z. Hao. Grid cellware: the first grid-enabled tool for modelling and simulating cellular processes. Bioinformatics, 21(7):1284-1287, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 1284-1287
-
-
Dhar, P.K.1
Meng, T.C.2
Somani, S.3
Ye, L.4
Sakharkar, K.5
Krishnan, A.6
Ridwan, A.B.7
Wah, S.H.K.8
Chitre, M.9
Hao, Z.10
-
15
-
-
0035905782
-
Modelling cellular behaviour
-
D. Endy and R. Brent. Modelling cellular behaviour. Nature, 409:391-395, 2001.
-
(2001)
Nature
, vol.409
, pp. 391-395
-
-
Endy, D.1
Brent, R.2
-
16
-
-
40849107093
-
-
A. Funahashi, Y. Matsuoka, A. Jouraku, H. Kitano, and N. Kikuchi. Celldesigner: a modeling tool for biochemical networks. In WSC '06: Proceedings of the 38th conference on Winter simulation, pages 1707-1712. Winter Simulation Conference, 2006.
-
A. Funahashi, Y. Matsuoka, A. Jouraku, H. Kitano, and N. Kikuchi. Celldesigner: a modeling tool for biochemical networks. In WSC '06: Proceedings of the 38th conference on Winter simulation, pages 1707-1712. Winter Simulation Conference, 2006.
-
-
-
-
17
-
-
33745217791
-
Sundials: Suite of nonlinear and differential/algebraic equation solvers
-
A. C. Hindmarsh, P. N. Brown, K. E. Grant, S. L. Lee, R. Serban, D. E. Shumaker, and C. S. Woodward. Sundials: Suite of nonlinear and differential/algebraic equation solvers. ACM Trans. Math. Softw., 31(3):363-396, 2005.
-
(2005)
ACM Trans. Math. Softw
, vol.31
, Issue.3
, pp. 363-396
-
-
Hindmarsh, A.C.1
Brown, P.N.2
Grant, K.E.3
Lee, S.L.4
Serban, R.5
Shumaker, D.E.6
Woodward, C.S.7
-
19
-
-
33845368513
-
Copasi - a complex pathway simulator
-
S. Hoops, S. Sahle, R. Gauges, C. Lee, J. Pahle, N. Simus, M. Singhal, L. Xu, P. Mendes, and U. Kummer. Copasi - a complex pathway simulator. Bioinformatics, 22(24):3067-3074, 2006.
-
(2006)
Bioinformatics
, vol.22
, Issue.24
, pp. 3067-3074
-
-
Hoops, S.1
Sahle, S.2
Gauges, R.3
Lee, C.4
Pahle, J.5
Simus, N.6
Singhal, M.7
Xu, L.8
Mendes, P.9
Kummer, U.10
-
20
-
-
10644250404
-
Evolving a lingua franca and associated software infrastructure for computational systems biology: The systems biology markup language (sbml) project
-
M. Hucka, A. Finney, B. Bornstein, S. Keating, B. Shapiro, J. Matthews, B. Kovitz, M. Schilstra, A. Funahashi, J. Doyle, and H. Kitano. Evolving a lingua franca and associated software infrastructure for computational systems biology: the systems biology markup language (sbml) project. Syst Biol (Stevenage), 1(1):41-53, 2004.
-
(2004)
Syst Biol (Stevenage)
, vol.1
, Issue.1
, pp. 41-53
-
-
Hucka, M.1
Finney, A.2
Bornstein, B.3
Keating, S.4
Shapiro, B.5
Matthews, J.6
Kovitz, B.7
Schilstra, M.8
Funahashi, A.9
Doyle, J.10
Kitano, H.11
-
21
-
-
17644427530
-
Sensitivity analysis of parameters controlling oscillatory signalling in the nf-κb pathway: The roles of ikk and i κ b α
-
A. Ihekwaba, D. Broomhead, R. Grimley, N. Benson, and D. Kell. Sensitivity analysis of parameters controlling oscillatory signalling in the nf-κb pathway: the roles of ikk and i κ b α. Systems Biology, 1(1):93-103, 2004.
-
(2004)
Systems Biology
, vol.1
, Issue.1
, pp. 93-103
-
-
Ihekwaba, A.1
Broomhead, D.2
Grimley, R.3
Benson, N.4
Kell, D.5
-
22
-
-
85142150984
-
-
S. Kimura1, T. Kawasaki, M. Hatakeyama, T. Naka, F. Konishi, and A. Konagaya. Obiyagns: a grid-based biochemical simulator with a parameter estimator. Bioinformatics, 20(10):1646-1648, 2004.
-
S. Kimura1, T. Kawasaki, M. Hatakeyama, T. Naka, F. Konishi, and A. Konagaya. Obiyagns: a grid-based biochemical simulator with a parameter estimator. Bioinformatics, 20(10):1646-1648, 2004.
-
-
-
-
23
-
-
0037079054
-
Computational systems biology
-
H. Kitano. Computational systems biology. Nature, 420:206-210, 2002.
-
(2002)
Nature
, vol.420
, pp. 206-210
-
-
Kitano, H.1
-
25
-
-
33745631242
-
The sbml ode solver library: A native api for symbolic and fast numerical analysis of reaction networks
-
March
-
R. Machnĺȩ, A. Finney, S. Mĺźller, J. Lu, S. Widder, and C. Flamm. The sbml ode solver library: a native api for symbolic and fast numerical analysis of reaction networks. Bioinformatics, March 2006.
-
(2006)
Bioinformatics
-
-
Machnĺȩ, R.1
Finney, A.2
Mĺźller, S.3
Lu, J.4
Widder, S.5
Flamm, C.6
-
26
-
-
0030921160
-
Biochemistry by numbers: Simulation of biochemical pathways with gepasi 3
-
September
-
P. Mendes. Biochemistry by numbers: simulation of biochemical pathways with gepasi 3. Trends Biochem Sci, 22(9):361-363, September 1997.
-
(1997)
Trends Biochem Sci
, vol.22
, Issue.9
, pp. 361-363
-
-
Mendes, P.1
-
27
-
-
0032406131
-
Non-linear optimization of biochemical pathways: Applications to metabolic engineering and parameter estimation
-
P. Mendes and D. B.Kell. Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. Bioinformatics, 14:869-883, 1998.
-
(1998)
Bioinformatics
, vol.14
, pp. 869-883
-
-
Mendes, P.1
Kell, D.B.2
-
29
-
-
13844266102
-
Simulation tools for biochemical networks: Evaluation of performance and usability
-
A. Pettinen, T. Aho, O.-P. Smolander, T. Manninen, A. Saarinen, K.-L. Taattola, O. Yli-Harja, and M.-L. Linne. Simulation tools for biochemical networks: evaluation of performance and usability. Bioinformatics, 21(3):357-363, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.3
, pp. 357-363
-
-
Pettinen, A.1
Aho, T.2
Smolander, O.-P.3
Manninen, T.4
Saarinen, A.5
Taattola, K.-L.6
Yli-Harja, O.7
Linne, M.-L.8
-
30
-
-
0012622436
-
Engineering design optimization using a swarm with an intelligent information sharing among individuals
-
T. Ray and P. Saini. Engineering design optimization using a swarm with an intelligent information sharing among individuals. Eng. Opt., 33:735-748, 2001.
-
(2001)
Eng. Opt
, vol.33
, pp. 735-748
-
-
Ray, T.1
Saini, P.2
-
31
-
-
46149100298
-
-
S. Sahle, R. Gauges, J. Pahle, N. Simus, U. Kummer, S. Hoops, C. Lee, M. Singhal, L. Xu, and P. Mendes. Simulation of biochemical networks using copasi: a complex pathway simulator. In WSC '06: Proceedings of the 38th conference on Winter simulation, pages 1698-1706. Winter Simulation Conference, 2006.
-
S. Sahle, R. Gauges, J. Pahle, N. Simus, U. Kummer, S. Hoops, C. Lee, M. Singhal, L. Xu, and P. Mendes. Simulation of biochemical networks using copasi: a complex pathway simulator. In WSC '06: Proceedings of the 38th conference on Winter simulation, pages 1698-1706. Winter Simulation Conference, 2006.
-
-
-
-
32
-
-
84993730733
-
Visualizing biological pathways: Requirements analysis, systems evaluation and research agenda
-
P. Saraiya, C. North, and K. Duca. Visualizing biological pathways: requirements analysis, systems evaluation and research agenda. Information Visualization, 4(3):191-205, 2005.
-
(2005)
Information Visualization
, vol.4
, Issue.3
, pp. 191-205
-
-
Saraiya, P.1
North, C.2
Duca, K.3
-
33
-
-
46249111348
-
User-oriented security supporting interdisciplinary life science research across the grid
-
May
-
R. Sinnott, O. Ajayi, J. Jiang, A. Stell, and J. Watt. User-oriented security supporting interdisciplinary life science research across the grid. Special Issue on Life Science Grids, New Generation Computing Journal, May 2007.
-
(2007)
Special Issue on Life Science Grids, New Generation Computing Journal
-
-
Sinnott, R.1
Ajayi, O.2
Jiang, J.3
Stell, A.4
Watt, J.5
-
34
-
-
33750949939
-
Grid infrastructures for secure access to and use of bioinformatics data: Experiences from the bridges project
-
R. Sinnott, A. Stell, M. Bayer, and J. Koetsier. Grid infrastructures for secure access to and use of bioinformatics data: Experiences from the bridges project. The First International Conference on Availability, Reliability and Security (ARES-2006), 2006.
-
(2006)
The First International Conference on Availability, Reliability and Security (ARES-2006)
-
-
Sinnott, R.1
Stell, A.2
Bayer, M.3
Koetsier, J.4
|