Applications of molecular markers to the genetic improvement of Camellia sinensis L. (tea) - A review

Journal of Horticultural Science and Biotechnology

Volumn 82, Issue 2, 2007, Pages 161-169

  Gunasekare, M T K ^a  

^a TEA RESEARCH INSTITUTE OF SRI LANKA   (Sri Lanka)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 53149086836     PISSN: 14620316     EISSN: None     Source Type: Journal    
DOI: 10.1080/14620316.2007.11512214     Document Type: Review

References (100)

1. AHMED, N and SINGH, I. D. (1993). A technique for rapid identification of ploidy level in tea. Two and a Bud, 40, 31-33.
2. ANTHONY, F. COMBES, M. C, ASTORGA, C, BERTRAND, B., GRAZIOSI, G. and LASHERMES, P. (2002). The origin of cultivated Coffea arabica L. varieties revealed by AFLP and SSR markers. Theoretical and Applied Genetics, 104, 894-900.
3. ARIAS, D. M. and RIESEBERG, L. H. (1994). Gene flow between cultivated and wild sunflowers. Theoretical and Applied Genetics, 89, 655-660.
4. BALASARAVANAN. T., PIUS, P. K. and KUMAR, R. (2001). Parentage of TRF-1 revealed. United Planters Association of South India (UPASI) Newsletter, 11, 1.
5. BALASARAVANAN,T., PIUS, P. K., KUMAR, R. R., MURALEEDHARAN, N. and SHASANY, A. K. (2003). Genetic diversity among south Indian tea germplasm using AFLP markers. Plant Science, 165, 365-372.
6. BANERJEE, B. (1992). Selection and breeding of tea. In: Tea: Cultivation to Consumption. (Willson, K.C. and Clifford, M. N., Eds.). Chapman and Hall, London, UK. 26-86.
7. BARUA, P. K. (1963). Classification of the tea plant. Two and a Bud, 10, 3-11.
8. BECKMANN, J. S. and SOLLER, M. (1983). RFLPs in genetic improvements: methodologies, mapping and costs. Theoretical and Applied Genetics, 67, 35-43.
9. BEZBARUAH, H. P. (1971). Tea breeding: A review. Two and a Bud, 22, 123-130.
10. BRETTING, P. K. and WIDRLECHNER, M. P. (1995). Genetic markers and horticultural germplasm management. HortScience, 30, 1349-1356.
11. BROWN, A. H. D. (1989). Core collections: a practical approach to genetic resources management. Genome, 31, 818-824.
12. CATO, S., GARDNER, R., KENT, J. and RICHARDSON, T. (2001). A rapid PCR based method for genetically mapping ESTs. Theoretical and Applied Genetics, 102, 296-306.
13. CHEN, L. and YAMAGUCHI, S. (2002) Genetic diversity and phy-Iogeny of tea plant and its related species and varieties in the section Thea, genus Camellia determined by randomly amplified polymorphic DNA analysis. Journal of Horticultural Science & Biotechnology, 77, 729-732.
14. CHEN, L., GAO, Q., CHEN, D. and Xu, C. (2005a). The use of RAPD markers for detecting genetic diversity, relationship and molecular identification of Chinese elite tea genetic resources preserved in tea germplasm repository. Biodiversity and Conservation, 14, 1433-1444.
15. CHEN, L., ZHAO, L. and GAO, Q. (2005b). Sequencing of cDNA clones and analysis of the ESTs properties of young tea plant (Camellia sinensis) shoots. Journal of Agricultural Biotechnology, 13, 21-25.
16. CHEN, L., ZHAO, L. and GAO, Q. (2005C). Generation and analysis of ESTs from the tender shoots cDNA library of tea plant (Camellia sinensis). Plant Science, 168, 359-363.
17. COLLARD, B. C. Y., JAHUFER, M. Z. Z., BROUWER, J. B. and PANG, E. C. K. (2005). An introduction to markers, QTL mapping and markers-assisted selection for crop improvements: The basic concept. Euphytica, 142, 169-196.
18. DEBENER, T. and MATTIESCH, L. (1999). Construction of a genetic linkage map for rose using RAPD and AFLP markers. Theoretical and Applied Genetics, 99, 891-899.
19. DEVARUMATH, R., NANDY, S., RAVI, V., MARIMUTHU, S., MURALEED-HARAN, N. and RAINA, S. (2002). RAPD, ISSR and RFLP fingerprints as useful markers to estimate genetic integrity of micropropagated plants of three diploid and triploid elite tea clones representing Camellia sinensis (China type) and C assamica, ssp. assamica (Assam-India type). Plant Cell Reports, 21,166-173.
20. DUBREUIL, P., DUFOUR, P., KREJCI, E., CAUSSE, M., VIENNE, D. and CHARCOSSET, A. (1996). Organisation of RFLP diversity among inbred lines of maize representing the most significant heterotic groups. Crop Science, 36, 790-799.
21. DUDLEY, J. W. (1993). Molecular markers in plant improvement: Manipulation of genes affecting quantitative traits. Crop Science, 33, 660-668.
22. FRANKEL, O. H. (1984). Genetic perspectives on germplasm conservation. In: Genetic Manipulation: Impact on Man and Society (Arber, W., Illmensee, K., Peacock, W.J. and Starlinger., Eds.). Cambridge University Press, Cambridge, UK. 161-170.
23. FREEMAN, S., WEST, J., JAMES, C., LEA, V. and MAYES, S. (2004). Isolation and characterisation of highly polymorphic microsatellites in tea (Camellia sinensis). Molecular Ecology Notes, 4, 324-326.
24. FU, Y. B. (2000). Effectiveness of bulking procedures in measuring population-pair wise similarity with dominant and co-dominant genetic markers. Theoretical and Applied Genetics, 100, 1284-1289.
25. GHISLAIN, M., ZHANG, D., FAJARDO, D., HUAMAN, Z. and HIJMANS, R. J. (1999). Marker-assisted sampling of the cultivated Andean potato collection using RAPDs. Genetic Resources and Crop Evolution, 46, 547-555.
26. GRATTAPAGLIA, D. and SEDEROFF, R. (1994). Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross mapping strategy and RAPD markers. Genetics, 137, 1121-1137.
27. GREEN, M. J. (1971). An evaluation of some criteria used in selecting large yielding tea clones. Journal of Agricultural Science, 76, 43-156.
28. GUNASEKARE, M. T. K., RANATUNGA, M. A. B. and KOTTAWA ARACHCHI, J. D. (2003). Plant Breeding Report: Establishing seedling population for the identification of molecular markers. Annual Report of Tea Research Institute of Sri Lanka for Year 2003, 138 pp.
29. GUPTA, P. K., ROY, J. K. and PRASAD, M. (2001). Single nucleotide polymorphism: A new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants. Current Science, 80,524-535.
30. HACKETT, C. A., WACHIRA, F. N, PAUL, S., POWELL, W. and WAUGH, R. (2000). Construction of a genetic linkage map for Camellia sinensis L. (tea). Heredity, 85, 346-355.
31. HAGIDIMITRIOU, M., KATSIOTIS, A., MENEXES, G., PONTIKIS, C. and LOUKAS, M. (2005). Genetic diversity of major Greek olive cultivars using molecular markers (AFLPs and RAPDs). Journal of the American Society for Horticultural Science, 130, 211-217.
32. HALEY, C. and ANDERSSON, A. (1997). Linkage mapping of quantitative trait loci in plants and animals. In: Genome Mapping-A Practical Approach. (Dear, P., Ed). Oxford University Press, New York, USA. 49-71.
33. HAMON, S., DUSSERT, S., NOIROT, M., ANTHONY, F. and HODGKING, T. (1998). Core collections - accomplishments and challenges. Plant Breeding Abstracts, 65, 1125-1133.
34. HEMMAT, M., WEEDEN, N. F., MANGANARIS, A. G. and LAWSON, D. M. (1994). Molecular marker linkage map for apple. Journal of Heredity, 85, 4-11.
35. HEMMAT, M., WEEDEN, N. F. and BROWN, S. K. (2003) Mapping and evaluation of Malus Χ domestica icrosatellites in apple. Journal of American Society of Horticultural Science, 128, 515-520.
36. HENRY, R. J. (1997). Practical Applications of Plant Molecular Biology. Chapman and Hall, London, UK. 57-133.
37. HITTALMANI, S., SHAHIDHAR, H. E., SIDHU, J. S. and KHUSH, G. S. (2002). Molecular mapping of quantitative trait loci for plant growth, yield and yield related traits across diverse locations in a doubled haploid rice population. Euphytica, 125, 207-214.
38. HODGKIN, T., BROWN, A. H. D. and MORALES, E.V. (1995). Core Collections of Plant Genetic Resources. John Wiley and Sons, Chichester, UK. 10-32.
39. HOKANSON, S. C., SZEWC-MCFADDEN, A. K., LAMBOY, W. F. and MCFERSON, J. R. (1998). Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus Χ domestica core subset collection. Theoretical and Applied Genetics, 97, 671-683.
40. HUANG, J., LI, J., HUANG, Y., LUO, J., GONG, Z. and LIU, Z. (2005). Construction of AFLP molecular marker linkage map in tea plant. Journal of Tea Science, 25, 7-15.
41. JIN, J, CUI, H., CHEN, W, LU, M., YAO, Y., XIN, Y. and GONG, X. (2006). Data mining for SSRs in ESTs and development of EST-SSR marker in tea plant (Camellia sinensis).Journal of Tea Science, 26, 17-23.
42. KARP, A., KRESOVICH, S., BHAT, K. V., AYAD,W. G. and HODGKIN, T. (1997). Molecular tools in plant genetic resources conservation: a guide to the technology. IPGRI Technical Bulletin, No. 2, 9-42.
43. KASHA, K.J. (1999). Biotechnology and world food supply. Genome, 42, 642-645.
44. KAUNDUN, S. S., ZHYVOLOUP, A. and PARK, Y. (2000). Evaluation of the genetic diversity among elite tea accessions using RAPD markers. Euphytica, 115, 7-16.
45. KAUNDUN, S. S. and MATSUMOTO, S. (2002). Heterologous nuclear and chloroplast microsatellite amplification and variation in tea, Camellia sinensis. Genome, 45, 1041-1048.
46. KENIS, K. and KEULEMANS, J. (2005). Genetic linkage maps of two apple cultivars (MalusΧdomestica Borkh.) based on AFLP and microsatellite markers. Molecular Breeding, 15, 205-219.
47. KINGDON-WARD, F. (1950). Does wild tea exist? Nature, 4191, 297-299.
48. KOLLER, B., LEHMANN, A., MCDERMOTT, J. M. and GESSLER, C. (1993). Identification of apple cultivars using RAPD markers. Theoretical and Applied Genetics, 85, 901-904.
49. KOOPMAN, W. M., ZEVENBERGEN, M. J. and BERG, R. G. (2001). Species relationships in Lactuca (Asteraceae) inferred from AFLP fingerprints. American Journal of Botany, 88, 1881-1887.
50. KORZUN, V., BOERNER, A., WORLAND, A.J.,LAW, C.N. and ROEDER, M. S. (1997). Applications of microsatellite markers to distinguish inter-varietal chromosome substitution lines in wheat. Euphytica, 95, 149-155.
51. KULASEGARAM, S. (1978). Progress in tea breeding. Tropical Agriculture Research Series, No. 11, 151-160.
52. LAI, J., YANG, W. and HSIAO, J. (2001). An assessment of genetic relationship in cultivated tea clones and native wild tea in Taiwan using RAPD and ISSR markers. Botanical Bulletin of Academia Sinica, 42, 93-100.
53. LI, Y., JIANG, C., YANG, S. and YU, Y. (2004). Beta-glucosidase cDNA cloning in the tea and its prokaryotic expression. Journal of Agricultural Biotechnology, 12, 625-629.
54. LIEBHARD, R., KELLERHALS, M., PFAMMATTER, W., JERTMINI, M. and GESSLER, C. (2003). Mapping quantitative physiological traits in apple (MalusΧdomestica Borkh). Plant Molecular Biology, 52, 511-526.
55. MAHAMOOD, T., RAHMAN, M. H., STRINGAM, G. R., YEH, F. and GOOD, A. (2005). Molecular markers for yield components in Brassica juncia - do these assist in breeding for high seed yield. Euphytica, 144, 157-167.
56. MARITA, J. M., RODRIGUEZ, J. M. and NIENHUIS, J. M. (2000). Development of an algorithm identifying maximally diverse core collection. Genetic Resources and Crop Evolution, 47, 515-526.
57. MEHLENBACHER, S. A. (1995). Classical and molecular approaches to breeding fruit and nut crops for disease resistance. HortScience, 30, 466-477.
58. MEWAN, K. M., LIYANAGE, A. C., EVERARD, J. M., GUNASEKARE, M. T. K. and KARUNANAYAKA, E. (2005). Studying genetic relationship among tea accessions in Sri Lanka using RAPD. Sri Lanka Journal of Tea Science, 70, 42-53.
59. MICHELMORE, R. W., PARAN, I. and KESSIL, R. V. (1991). Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect major genes in specific genomic regions by using segregating populations. Proceedings of the National Academy of Science of the USA, 8, 9828-9832.
60. MISHRA, R. K. and SEN-MANDI, S. (2004a). Genetic diversity estimates for Darjeeling tea clones based on AFLP markers. Journal of Tea Science, 24, 86-92.
61. MISHRA, R. K. and SEN-MANDI, S. (2004b). Molecular profiling and development of DNA marker associated with drought tolerance in tea clones growing in Darjeeling. Current Science, 87, 60-66.
62. MOHAN, M. S., NAIR, S., BAGHWAT, A., KRISHNA, T.G., YANO, M., BHATIA, C. R. and SASAKI, T. (1997). Genome mapping, molecular markers and marker-assisted selection in crop plants. Molecular Breeding, 3, 87-103.
63. MORINAGO, T., FUKUSHIMA, E., KANO, T., MARUYAMA, Y. and YAMASAKI, Y. (1929). Chromosome numbers in cultivated plants. Botanical Magazine Tokyo, 43, 569-594.
64. OLIVERA, C. M., MOTA, M., MONTE-CORVO, L., GOULAO, L. and SILVA, D.M. (1999). Molecular typing of Pyrus based on RAPD markers. Scientia Horticulturae, 79, 163-174.
65. PARANI, M., SINGH, K. N., RAGASWAMY, S. and RAMALINGAM, R.S. (1997). Identification of Sesamum alatumΧSesamum indicum hybrid using protein, isozyme and RAPD markers. Indian Journal of Genetics and Plant Breeding, 57, 381-388.
66. PARK, J. S. KIM, J. B. and HAHN, B. S. (2004). EST analyses of genes involved in secondary metabolism in Camellia sinensis (tea) using suppression subtractive hybridization. Plant Science, 166, 953-961.
67. PAUL, S., WACHIRA, F. N., POWELL, W. and WAUGH, R. (1997). Diversity and genetic differentiation among population of Indian and Kenyan tea revealed by AFLP markers. Theoretical and Applied Genetics, 94, 255-263.
68. PEJIC, I., MORGANTE, M., KOZUMPLIK, V.,TARAMINO, G. and MOTTO, M. (1998). Comparative analyses of genetic similarity among maize inbreds detected by RFLPs, RAPDs, SSRs and AFLPs. Theoretical and Applied Genetics, 97, 1248-1255.
69. PRASANNA, B. M. and HOISINGTON, D. (2003). Molecular breeding for maize improvement: An overview. Indian Journal of Biotechnology, 2, 85-98.
70. RAFALSKI, J. A. (2002). Novel genetic mapping tools in plants: SNPs and LD-based approaches. Plant Science, 162, 329-333.
71. RIBAUT, J. M. and HOISINGTON, D. (1998). Marker-assisted selection: New tools and strategies. Trends in Plant Science, 3, 236-239.
72. Richards, A. V. (1966). The breeding, selection and propagation of tea. The Tea Quarterly, 37, 154-160.
73. ROGERS, S. (1975). Observations on pollen tube compatibility in tea clones. Tea Quarterly, 45, 91-100.
74. RONNING, C. M. and SCHNELL, R. J. S. (1994). Allozyme diversity in a germplasm collection of Theobroma cacao L.. Journal of Heredity, 85, 291-295.
75. RUSSELL, J. R., FULLER, J. D., MACAULAY, M., HATZ, B. G., JAHOOR, A., POWELL, W. and WAUGH, R. (1997). Direct comparison of levels of genetic variation among barley accessions detected by AFLPs, SSRs and RAPDs. Theoretical and Applied Genetics, 95, 714-722.
76. SINGH, I. D. (1999). Plant improvement. In: Global Advances in Tea Science. (Jain, N.K., Ed.). Aravali Books International Ltd., New Delhi, India. 427-448.
77. STAUB, J. E. and SERQUEN, F. X. (1996). Genetic markers, map construction and their application in plant breeding. HortScience, 31, 729-740.
78. SPOONER, D., TREUREN, R. and VICENTE, M. C. (2005). Molecular markers for genebank management. IPGRI Technical Bulletin, No. 10, 56-73.
79. STUBER, C. W., POLACCO, M. and SENIOR, M. L. (1999). Synergy of empirical breeding, marker-assisted selection, and genomics to increase crop yield potential. Crop Science, 39, 1571-1583.
80. TANKSLEY, S. D., YOUNG, N. D., PATERSON, A. H. and BONIERBALE, M.W. (1989). RFLP mapping in plant breeding: new tools for an old science. Biotechnology, 7, 264.
81. TOHME, J., GONZALEZ, D. O., BEEBE, S. and DUQUE, M. C. (1996). AFLP analyses of gene pools of a wild bean core collection. Crop Science, 36, 1375-1384.
82. TREUREN, R., TCHOUDINOVA, I., SOEST, L. J. M. and HINTUM, J. L. (2006). Marker-assisted acquisition and core collection formation: a case study in barley using AFLPs and pedigree data. Genetic Resources and Crop Evolution, 53, 43-52.
83. VIGNANI, R., BOWERS, J. E. and MEREDITH, C. P. L. (1996). Microsatellite DNA polymorphism analyses of clones of Vitis vinifera 'Sangiovese'. Science and Horticulture, 65, 163-169.
84. VIRIK, P. S., NEWBURY, H. J., JACKSON, M. T. and FORD-LLOYD, B. V. (1995).The identification of duplicate accessions within the rice germplasm collection using RAPD analysis. Theoretical and Applied Genetics. 90, 1049-1055.
85. WACHIRA, F. N., WAUGH, R., HACKETT, C. A. and POWELL, W. (1995). Detection of genetic diversity of tea (Camellia sinensis L.) using RAPD markers. Genome, 38, 201-210.
86. WACHIRA, F. N., POWELL, W. and WAUGH, R. (1997). An assessment of genetic diversity among Camellia sinensis L. (cultivated tea) and its wild relatives based on RAPDs and organelle-specific STS. Heredity, 78, 603-611.
87. WACHIRA, F. R, TANAKA, J. and TAKEDA, Y. (2001). Genetic variation and differentiation of tea (Camellia sinensis) germplasm revealed by RAPD and AFLP variation. Journal of Horticultural Science & Biotechnology, 76, 557-563.
88. WEEDEN, N., TIMMERMAN, M., HERMMAT, M., KEEN, B. E. and LODHI, M. A. (1992). Inheritance and reliability of RAPD markers. Proceedings of Symposium on Applications of RAPD Technology to Plant Breeding. Nov. 1992. Minneapolis, MN, USA, 12-17.
89. WEEDEN, N., TIMMERMAN, G. and LU, J. (1994). Identifying and mapping genes of economic significance. Euphytica, 73, 191-198.
90. WICKRAMARATNE, M. R.T. (1981). Variation in some leaf characteristics in tea and their use in the identification of clones. Tea Quarterly, 50, 183-189.
91. WILLIAMS, J. G. K., KUBELIK, A. R., LIVAK, K.J., RAFALSKI, J. A. and TINGEY, S. V. (1990). DNA polymorphism amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 6531-6535.
92. WINTER, P. and KAHL, G. (1995). Molecular marker technologies for plant improvement. World Journal of Microbiology and Biochemistry, 11, 438-448.
93. YAMAMOTO, T, KIMURA, T., SHODA, M., IMAI, T., SAITO, T., SAWA-MURA, Y., KOTOBUKI, K., HAYASHI, T. and MATSUTA, N. (2002). Genetic linkage maps constructed by using an inter-specific cross between Japanese and European pear. Theoretical and Applied Genetics, 106, 9-18.
94. YAO, M., HUANG, H., YU, J. and CHEN, L. (2005). Analysis on applicability of ISSR in molecular identification and relationship investigation of tea cultivars. Journal of Tea Science, 25, 153-157.
95. YOUNG, N. D.(1994). Constructing a plant genetic linkage map with DNA markers, In: Dna Based Markers in Plants. (Ronald, K. V. and Phillips, L., Eds.). Kluwer, Dordrecht, The Netherlands. 39-57.
96. YOUNG, N. D. (1999). A cautiously optimistic vision for marker-assisted breeding. Molecular Breeding, 5, 505-510.
97. YOUNG, N. D., KUMAR, L., MENANCIO, D., DANESH, D., TALEKAR, N. A., SHANMUGASUNDARUM, S. and KIM, D. H. (1992). RFLP mapping of a major bruchid resistance gene in mungbean. Theoretical and Applied Genetics, 84, 839-844.
98. YOUNG-GOO, P., KAUNDUN, S.S. and ZHYVOLOUP, A. (2002) of bulked genomic DNA-based RAPD methodology to asses the genetic diversity among abandoned Korean tea plantations. Genetic Resources and Crop Evolution, 49, 1-7.
99. YUANWEN, T., TANABE, K., TAMURA, F. and ITAI, A. (2001). Genetic relationship of pear cultivars in Xinjiang, China, as measured by RAPD markers. Journal of Horticultural Science&Biotechnology, 76, 771-779.
100. ZHANG, Y., MIAN, A. R. and BOUTON, J. H. (2006). Recent molecular and genomic studies on stress tolerance of forage and turf grass. Crop Science, 46, 497-511.