Hierarchical coexistence of universality and diversity controls robustness and multi-functionality in protein materials

Journal of Computational and Theoretical Nanoscience

Volumn 5, Issue 7, 2008, Pages 1193-1204

  Ackbarow, Theodor ^a   Buehler, Markus J ^a  

^a Massachusetts Institute of Technology Cambridge   (United States)

Author keywords

Adaptation; Diversity; Fracture; Hierarchical material; Mechanical properties; Protein; Robustness; Universality

Indexed keywords

BIOMECHANICS; BIOMIMETICS; FRACTURE; FUNCTIONAL MATERIALS; MECHANICAL PROPERTIES; ROBUSTNESS (CONTROL SYSTEMS); SILK; TISSUE;

ADAPTATION; DIVERSITY; ELEMENTARY BUILDING BLOCKS; HIERARCHICAL MATERIALS; HIERARCHICAL STRUCTURES; MULTI-FUNCTIONAL MATERIALS; STRUCTURE AND PROPERTIES; UNIVERSALITY;

PROTEINS;

EID: 53049095826     PISSN: 15461955     EISSN: None     Source Type: Journal    
DOI: 10.1166/jctn.2008.2554     Document Type: Review

References (72)

1. B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walter, Molecular Biology of the Cell, Taylor & Francis, New York (2002).
2. P. Ball, Made to Measure: New Materials for the 21st Century, Princeton University Press, Princeton, NJ, USA (1997).
3. J. Doyle, Nature 446, 860 (2007).
4. M. E. Csete and J. C. Doyle, Science 295, 1664 (2002).
5. U. Alon, Nature 446, 497 (2007).
6. D. Baker, Nature 405, 39 (2000).
7. H. Kitano, Science 295, 1662 (2002).
8. H. A. Bruck, J. J. Evans, and M. L. Peterson, Experimental Mechanics 42, 361 (2002).
9. V. Ahl and T. F. H. Allen, Hierarchy Theory - A Vision, Vocabulary, and Epistemology, Columbia University Press, New York (1996).
10. R. Lakes, Nature 361, 511 (1993).
11. E. B. Tadmor, M. Ortiz, and R. Phillips, Phil. Mag. A 73, 1529 ( 1996).
12. J. Knap and M. Ortiz, J. Mech. Phys. Sol. 49, 1899 (2001).
13. L. M. Dupuy, E. B. Tadmor, R. E. Miller, and R. Phillips, Phys. Rev. Lett. 95, 060202 (2005).
14. H. Kitano, Nature 420, 206 (2002).
15. J. M. Carlson and J. Doyle, Proceedings of the National Academy of Sciences of the United States of America (2002), Vol. 99, pp. 2538-2545.
16. J. M. Carlson and J. Doyle, Phys. Rev. E 60, 1412 (1999).
17. U. Alon, M. G. Surette, N. Barkai, and S. Leibler, Nature 397, 168 (1999).
18. G. von Dassow, E. Meir, E. M. Munro, and G. M. Odell, Nature 406, 188 (2000).
19. T. R. Lezon, J. R. Banavar, and A. Maritan, J. Phys.-Condens. Matter 18, 847 (2006).
20. S. Wolfram, A New Kind of Science, Wolfram Media, Champaign (2002).
21. N. S. Goel and R. L. Thompson, Computer Simulations of Self-Organization in Biological Systems, Croom Helm, London & Sydney (1988).
22. J. H. Holland, Hidden Order - How Adaptation Builds Complexity, Helix Books, Reading, MA (1995).
23. T. Ackbarow and M. J. Buehler Experimental Mechanics, available online, DOI 10.1007/s11340-007-9100-6 (2007).
24. S. V. Strelkov, J. Schumacher, P. Burkhard, U. Aebi, and H. Herrmann, J. Mol. Biol. 343, 1067 (2004).
25. A. Kaminska, Human Genetics 114, 306 (2004).
26. H. Herrmann and U. Aebi, Annu. Rev. Biochem. 73, 749 (2004).
27. N. Mucke, R. Kirmse, T. Wedig, J. F. Leterrier, and L. Kreplak, Journal of Structural Biology 150, 268 (2005).
28. N. Mucke, L. Kreplak, R. Kirmse, T. Wedig, H. Herrmann, U. Aebi, and J. Langowski, J. Mol. Biol. 335, 1241 (2004).
29. D. M. Tbivola, G. Z. Tao, A. Habtezion, J. Liao, and M. B. Omary, Trends in Cell Biology 15, 608 (2005).
30. P. A. Coulombe and M. B. Omary, Current Opinion in Cell Biology 14, 110 (2002).
31. L. H. Gu and P. A. Coulombe, Current Opinion in Cell Biology 19, 13 (2007).
32. S. Kim, P. Wong, and P. A. Coulornbe, Nature 441, 362 (2006).
33. H. Zahn, J. Fohles, M. Nienhaus, A. Schwan, and M. Spel, Industrial & Engineering Chemistry Product Researrh and Development 19, 496 (1980).
34. L. Kreplak, J. Doucet, P. Dumas, and F. Briki, Biophys. J. 87, 640 (2004).
35. L. Kreplak, A. Franbourg, F. Briki, F. Leroy, D. Dalle, and J. Doucet, Biophys. J. 82, 2265 (2002).
36. M. T. Lorenzo Alibardi, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 308B, 200 (2007).
37. K. N. Dahl, D. E. Discher, and K. L. Wilson, Molecular Biology of the Cell 15, 119A (2004).
38. A. C. Rowat, J. Lammerding, and J. H. Ipsen, Biophys. J. 91, 4649 (2006).
39. J. Lammerding, P. C. Schulze, T. Takahashi, S. Kozlov, T. Sullivan, R. D. Kamm, C. L. Stewart, and R. T. Lee, Journal of Clinical Investigation 113, 370 (2004).
40. J. Lammerding, L. G. Fong, J. Y. Ji, K. Rene, C. L. Stewart, S. G. Young, and R. T. Lee, Journal of Biological Chemistry 281, 25768 (2006).
41. L. Mounkes, S. Kozlov, B. Burke, and C. L. Stewart, Current Opinion in Genetics & Development 13, 223 (2003).
42. J. M. Bridger, N. Foeger, I. R. Kill, and H. Herrmann, Febs Journal 274, 1354 (2007).
43. M. J. Buehler, J. Comput. Theor Nanosci. 3, 603 (2006).
44. M. J. Buehler and T. Ackbarow, Mater. Today 10, 46 (2007).
45. M. J. Buehler and H. Gan, Ultra Large Scale Atornistic Simulations of Dynamic Fracture, American Scientific Publishers (ASP) (2006).
46. M. J. Buehler and H. Gao, Nature 439, 307 (2006).
47. M. J. Buehler, F. F. Abraham, and H. Gao, Nature 426, 141 (2003).
48. J. Case, L. Chilver, and C. T. F. Ross, Strength of Materials and Structures, 4th edn., Arnold, New York (1999).
49. S. Weiner and H. D. Wagner, Annu. Rev. Mater. Sci. 28, 271 ( 1998).
50. J. D. Currey, Bones: Structure and Mechanics, Princeton University Press, Princeton, NJ (2002).
51. M. J. Buehler, Nanotechnology 18, 295102 (2007).
52. D. Taylor, J. G. Hazenberg, and T. C. Lee, Nat. Mater. 6, 263 ( 2007).
53. S. L. Berger, Nature 408, 412 (2000).
54. J. C. Doyle, D. L. Alderson, L. Li, S. Low, M. Rougban, S. Shalunov, R. Tanaka, and W. Willinger, Proceedings of the National Academy of Sciences of the United States of America (2005), Vol. 102, pp. 14497-14502.
55. J. Doyle and M. Csete, Nature 446, 860 (2007).
56. P. Fraser and W. Bickmore, Nature 447, 413 (2007).
57. H. J. Gao, International Journal of Fracture 138, 101 (2006).
58. B. H. Ji and H. J. Gao, Journal of the Mechanics and Physics of Solids 52, 1963 (2004).
59. H. Gao, B. Ji, I. L. Jäger, E. Arzt, and P. Fratzl, P. Natl. Acad. Sci. USA 100, 5597 (2003).
60. H. S. Gupta, J. Seto, W. Wagermaier, P. Zaslansky, P. Boesecke, and P. Fratzl, P. Natl. Acad. Sci. USA 103, 17741 (2006).
61. X. Q. Cui, C. M. Li, J. F. Zang, Q. Zhou, Y. Gan, H. F. Bao, J. Guo, V. S. Lee, and S. M. Moochhala, J. Phys. Chem C 111, 2025 (2007).
62. R. A. Hule and D. J. Pochan, MRS Bull. 32, 5 (2007).
63. K. I. Winey and R. A. Vaia, MRS Bull. 32, 5 (2007).
64. R. Langer and D. A. Tirrell, Nature 428, 487 (2004).
65. W. A. Petka, J. L. Harden, K. P. McGrath, D. Wirtz, and D. A. Tirrell, Science 281, 389 (1998).
66. J. M. Smeenk, M. B. J. Otten, J. Thies, D. A. Tirrell, H. G. Stunnenberg, and J. C. M. van Hest, Angew. Chem.-Int. Ed. 44, 1968 (2005).
67. X. J. Zhao and S. G. Zhang, Macromolecular Bioscience 7, 13 ( 2007).
68. X. J. Zhao and S. G. Zhang, Chem. Soc. Rev. 35, 1105 (2006).
69. A. Mershin, B. Cook, L. Kaiser, and S. G. Zhang, Nat. Biotechnol. 23, 1379 (2005).
70. R. Webb, Nature 446, 869 (2007).
71. N. Ferguson, Nature 446, 733 (2007).
72. B. B. Mandelbrot, Proceedings of the Royal Society of London Series a-Mathematical Physical and Engineering Sciences (1989), Vol. 423, pp. 3-16.