Calcineurin B-Like family in Populus: Comparative genome analysis and expression pattern under cold, drought and salt stress treatment

Plant Growth Regulation

Volumn 56, Issue 2, 2008, Pages 129-140

  Zhang, Hechen ^a   Yin, Weilun ^a   Xia, Xinli ^a  

^a BEIJING FORESTRY UNIVERSITY   (China)

Author keywords

Calcium signaling; CBL; Populus euphratica; Populus trichocarpa; Signal transduction; Stress treatment

Indexed keywords

ARABIDOPSIS; POPULUS; POPULUS EUPHRATICA; POPULUS TRICHOCARPA;

EID: 52649174407     PISSN: 01676903     EISSN: 15735087     Source Type: Journal    
DOI: 10.1007/s10725-008-9293-4     Document Type: Article

References (38)

1. 2+-regulated kinases EMBO J 20 1051 1063 10.1093/emboj/20.5.1051
2. V Albrecht S Weinl D Blazevic C D'Angelo O Batistic Ü Kolukisaoglu 2003 The calcium sensor CBL1 integrates plant response to abiotic stresses Plant J 36 457 470 10.1046/j.1365-313X.2003.01892.x
3. T Asano N Tanaka G Nagao 2005 Genome-wide identification of the rice calcium-dependent protein kinase and its closely related kinase gene families: comprehensive analysis of the CDPKs gene family in rice Plant Cell Physiol 46 2 356 366 10.1093/pcp/pci035
4. O Batistic J Kudla 2004 Integration and channeling of calcium signaling through the CBL calcium sensor/CIPK proteins kinase network Planta 219 915 924 10.1007/s00425-004-1333-3
5. M Boudsocq C Laurière 2005 Osmotic signaling in plants. Multiple pathways mediated by emerging kinase families Plant Physiol 138 1185 1194 10.1104/pp. 105.061275
6. M Brosché B Vinocur ER Alatalo A Lamminmäki T Teichmann EA Ottow 2005 Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert Genome Biol 6 12 R101 10.1186/gb-2005-6-12-r101
7. S Chang J Puryear J Cairney 1993 A simple and efficient method for isolating RNA from pine trees Plant Mol Biol Rep 11 113 116 10.1007/BF02670468
8. YH Cheong KN Kim GK Pandey R Gupta JJ Grant S Luan 2003 CBL, a calcium sensor that differentially regulates salt, drought, and cold responses in Arabidopsis Plant Cell 15 1833 1845 10.1105/tpc.012393
9. L Falquet L Pagni P Bucher N Hulo CJ Sigrist K Hofmann 2002 The PROSITE database-its status in 2002 Nucleic Acids Res 30 235 238 10.1093/nar/30.1.235
10. S Gilroy A Trewavas 2001 Signal processing and transduction in plant cells: the end of the beginning? Nat Rev Mol Biol 2 307 314 10.1038/35067109
11. R Gu S Fonseca LG Puskas L Hackler Jr A Zvara D Dudits 2004 Transcript identification and profiling during salt stress and recovery of Populus euphratica Tree Physiol 24 265 276
12. U Halfter M Ishitani JK Zhu 2000 The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3 Proc Natl Acad Sci USA 97 3735 3740 10.1073/pnas.040577697
13. JF Harper 2001 Dissecting calcium oscillators in plant cell Trends Plant Sci 6 395 397 10.1016/S1360-1385(01)02023-4
14. TL Holdaway-Clarke JA Feijo GR Hackett JG Kunkel PK Hepler 1997 Pollen tube growth and the intracellular cytosolic calcium gradient oscillate in phase while extracellular calcium flux is delayed Plant Cell 9 1999 2010
15. J Kilian D Whitehead J Horak J Wanke S Weinl O Batistic 2007 The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses Plant J 50 2 347 363 10.1111/j.1365-313X.2007.03052.x
16. KN Kim YH Chong R Gupta S Luan 2000 Interaction specificity of Arabidopsis calcineurin B-like calcium sensors and their target kinases Plant Physiol 124 1844 1853 10.1104/pp. 124.4.1844
17. Ü Kolukisaoglu S Weinl D Blazevic O Batistic J Kudla 2004 Calcium sensors and their interacting protein kinases: genomics of the Arabidopsis and rice CBL-CIPK signaling networks Plant Physiol 134 43 58 10.1104/pp. 103.033068
18. J Kudla Q Xu K Harter W Gruissem S Luan 1999 Genes for calcineurin B-like proteins in Arabidopsis are differentially regulated by stress signals Proc Natl Acad Sci USA 96 4718 4723 10.1073/pnas.96.8.4718
19. SC Lee WZ Lan BG Kim L Li YH Cheong GK Pandey 2007 A protein phosphorylation/dephosphorylation network regulates a plant potassium channel Proc Natl Acad Sci USA 104 15959 15964 10.1073/pnas.0707912104
20. + channel for low-K response in Arabidopsis Proc Natl Acad Sci USA 103 12625 12630 10.1073/pnas.0605129103
21. T Lion 1996 Control genes in reverse transcriptase polymerase chain reaction assays Leukemia 10 1527 1528
22. J Liu M Ishitani U Halfter CS Kim JK Zhu 2000 The Arabidopsis thaliana SOS2 gene encodes a protein kinase that is required for salt tolerance Proc Natl Acad Sci USA 97 3730 3734 10.1073/pnas.060034197
23. Luan S, Kudla J, Rodriguez-Concepcion M, Yalovsky S, Gruissem W (2002) Calmodulins and calcineurin B-like proteins: calcium sensors for specific signal response coupling in plants. Plant Cell 14(Suppl):S389-S400
24. S Mahajan SK Sopory N Tuteja 2006 Cloning and characterization of CBL-CIPK signaling components from a legume (Pisum sativum) FEBS J 273 5 907 925 10.1111/j.1742-4658.2006.05111.x
25. E McCormack J Braam 2003 Calmodulins and related potential calcium sensors of Arabidopsis New Phytol 159 585 595 10.1046/j.1469-8137.2003.00845.x
26. M Nagae A Nozawa N Koizumi H Sano H Hashimoto M Sato 2003 The crystal structure of the novel calcium-binding protein AtCBL2 from Arabidopsis thaliana J Biol Chem 278 42240 42246 10.1074/jbc.M303630200
27. EA Ottow M Brinker T Teichmann E Fritz W Kaiser M Brosche 2005 Populus euphratica displays apoplastic sodium accumulation, osmotic adjustment by decreases in calcium and soluble carbohydrates, and develops leaf succulence under salt stress Plant Physiol 139 1185 1193 10.1104/pp. 105.069971
28. GK Pandey YH Cheong KN Kim S Luan 2004 The calcium sensor calcineurin B-like 9 modulates abscisic acid sensitivity and biosynthesis in Arabidopsis Plant Cell 16 1912 1924 10.1105/tpc.021311
29. R Quan H Lin I Mendoza Y Zhang W Cao Y Yang 2007 SCABP8/CBL10, a putative calcium sensor, interacts with the protein kinase SOS2 to protect Arabidopsis shoots from salt stress Plant Cell 19 1415 1431 10.1105/tpc.106.042291
30. MJ Sánchez-Barrena M Martinez-Ripoll JK Zhu A Albert 2005 The structure of the Arabidopsis thaliana SOS3: molecular mechanism of sensing calcium for salt stress response J Mol Biol 345 5 1253 1264 10.1016/j.jmb.2004. 11.025
31. D Sanders C Brownlee JF Harper 1999 Communicating with calcium Plant Cell 11 691 706
32. Sanders D, Pelloux J, Brownlee C, Harper JF (2002) Calcium at the crossroads of signaling. Plant Cell 14(Suppl.):S401-S417.
33. J Shi KN Kim O Ritz V Albrecht R Gupta K Harter 1999 Novel protein kinases associated with calcineurin B-like calcium sensors in Arabidopsis Plant Cell 11 2393 2406
34. L Sterck S Rombauts S Jansson 2005 EST data suggest that poplar is an ancient polyploidy New Phytol 167 165 170 10.1111/j.1469-8137.2005.01378.x
35. GA Tuskan S DiFazio S Jansson J Bohlmann I Grigoriev 2006 The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) Science 313 1596 1604 10.1126/science.1128691
36. + transporter AKT1 in Arabidopsis Cell 125 7 1347 1360 10.1016/j.cell.2006.06.011
37. Y Yu X Xia W Yin H Zhang 2007 Comparative genomic analysis of CIPK gene family in Arabidopsis and Populus Plant Growth Regul 52 101 110 10.1007/s10725-007-9165-3
38. RE Zielinski 1998 Calmodulin and calmodulin-binding proteins in plants Plant Mol Biol 49 697 725 10.1146/annurev.arplant.49.1.697