The T body, a new cytoplasmic RNA granule in Saccharomyces cerevisiae

Molecular and Cellular Biology

Volumn 28, Issue 19, 2008, Pages 6022-6032

  Malagon, Francisco ^a   Jensen, Torben Heick ^a  

^a AARHUS UNIVERSITY   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

GLUCOSE; MESSENGER RNA; POLYADENYLIC ACID; PROTEIN RBP1P; RNA; RNA POLYMERASE II; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SPT21P; TRANSCRIPTION FACTOR SRB2P; TRANSCRIPTION FACTOR SRB5P; UNCLASSIFIED DRUG;

ARTICLE; CELL FATE; CELL GRANULE; GENE DELETION; GENE MUTATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN EXPRESSION; PROTEIN RNA BINDING; RETROVIRUS; RNA ANALYSIS; RNA PROCESSING; SACCHAROMYCES CEREVISIAE; T BODY; TRANSCRIPTION REGULATION;

CYTOPLASMIC GRANULES; FUNGAL PROTEINS; RETROELEMENTS; RNA, FUNGAL; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS;

SACCHAROMYCES CEREVISIAE;

EID: 52649091836     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.00684-08     Document Type: Article

References (69)

1. Anderson, P., and N. Kedersha. 2006. RNA granules. J. Cell Biol. 172:803-808.
2. Arndt, K. M., and C. M. Kane. 2003. Running with RNA polymerase: eukaryotic transcript elongation. Trends Genet. 19:543-550.
3. Beliakova-Bethell, N., C. Beckham, T. H. Giddings, Jr., M. Winey, R. Parker, and S. Sandmeyer. 2006. Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components. RNA 12:94-101.
4. Bentley, D. L. 2005. Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors. Curr. Opin. Cell Biol. 17:251-256.
5. Boeke, J. D., D. J. Garfinkel, C. A. Styles, and G. R. Fink. 1985. Ty elements transpose through an RNA intermediate. Cell 40:491-500.
6. Brengues, M., D. Teixeira, and R. Parker. 2005. Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 310:486-489.
7. Brookman, J. L., A. J. Stott, P. J. Cheeseman, C. S. Adamson, D. Holmes, J. Cole, and N. R. Burns. 1995. Analysis of TYA protein regions necessary for formation of the Ty1 virus-like particle structure. Virology 212:69-76.
8. Brookman, J. L., A. J. Stott, P. J. Cheeseman, N. R. Burns, S. E. Adams, A. J. Kingsman, and K. Gull. 1995. An immunological analysis of Ty1 virus-like particle structure. Virology 207:59-67.
9. Capsey, L. J., D. H. Williamson, and G. R. Banks. 1990. Ty virus-like particles in the Saccharomyces cerevisiae strain NCYC74. Curr. Genet. 18:485-491.
10. Chadick, J. Z., and F. J. Asturias. 2005. Structure of eukaryotic Mediator complexes. Trends Biochem. Sci. 30:264-271.
11. Chapman, K. B., and J. D. Boeke. 1991. Isolation and characterization of the gene encoding yeast debranching enzyme. Cell 65:483-492.
12. Cole, C. N., and J. J. Scarcelli. 2006. Transport of messenger RNA from the nucleus to the cytoplasm. Curr. Opin. Cell Biol. 18:299-306.
13. Cote, C. A., D. Gautreau, J. M. Denegre, T. L. Kress, N. A. Terry, and K. L. Mowry. 1999. A Xenopus protein related to hnRNP I has a role in cytoplasmic RNA localization. Mol. Cell 4:431-437.
14. Cramer, P., D. A. Bushnell, and R. D. Kornberg. 2001. Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 292:1863-1876.
15. Curcio, M. J., and D. J. Garfinkel. 1991. Single-step selection for Ty1 element retrotransposition. Proc. Natl. Acad. Sci. USA 88:936-940.
16. Doma, M. K., and R. Parker. 2007. RNA quality control in eukaryotes. Cell 131:660-668.
17. Donaldson, I. M., and J. D. Friesen. 2000. Zinc stoichiometry of yeast RNA polymerase II and characterization of mutations in the zinc-binding domain of the largest subunit. J. Biol. Chem. 275:13780-13788.
18. Elder, R. T., T. P. St. John, D. T. Stinchcomb, R. W. Davis, S. Scherer, and R. W. Davis. 1981. Studies on the transposable element Ty1 of yeast. I. RNA homologous to Ty1. II. Recombination and expression of Ty1 and adjacent sequences. Cold Spring Harbor Symp. Quant. Biol. 45:581-591.
19. Garfinkel, D. J., J. D. Boeke, and G. R. Fink. 1985. Ty element transposition: reverse transcriptase and virus-like particles. Cell 42:507-517.
20. Gu, W., F. Pan, H. Zhang, G. J. Bassell, and R. H. Singer. 2002. A predominantly nuclear protein affecting cytoplasmic localization of beta-actin mRNA in fibroblasts and neurons. J. Cell Biol. 156:41-51.
21. Hachet, O., and A. Ephrussi. 2004. Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization. Nature 428:959-963.
22. Happel, A. M., M. S. Swanson, and F. Winston. 1991. The SNF2, SNF5 and SNF6 genes are required for Ty transcription in Saccharomyces cerevisiae. Genetics 128:69-77.
23. Hess, D., B. Liu, N. R. Roan, R. Sternglanz, and F. Winston. 2004. Spt10-dependent transcriptional activation in Saccharomyces cerevisiae requires both the Spt10 acetyltransferase domain and Spt21. Mol. Cell. Biol. 24:135-143.
24. Hess, D., and F. Winston. 2005. Evidence that Spt10 and Spt21 of Saccharomyces cerevisiae play distinct roles in vivo and functionally interact with MCB-binding factor, SCB-binding factor and Snf1. Genetics 170:87-94.
25. Hübner, W., P. Chen, A. Del Portillo, Y. Liu, R. E. Gordon, and B. K. Chen. 2007. Sequence of human immunodeficiency virus type 1 (HIV-1) Gag localization and oligomerization monitored with live confocal imaging of a replication-competent, fluorescently tagged HIV-1. J. Virol. 81:12596-12607.
26. Jouvenet, N., S. J. Neil, C. Bess, M. C. Johnson, C. A. Virgen, S. M. Simon, and P. D. Bieniasz. 2006. Plasma membrane is the site of productive HIV-I particle assembly. PLoS Biol. 4:e435.
27. Karst, S. M., M. L. Rutz, and T. M. Menees. 2000. The yeast retrotransposons Ty1 and Ty3 require the RNA Lariat debranching enzyme, Dbr1p, for efficient accumulation of reverse transcripts. Biochem. Biophys. Res. Commun. 268:112-117.
28. Kenna, M. A., C. B. Brachmann, S. E. Devine, and J. D. Boeke. 1998. Invading the yeast nucleus: a nuclear localization signal at the C terminus of Ty1 integrase is required for transposition in vivo. Mol. Cell. Biol. 18:1115-1124.
29. Kornberg, R. D. 2007. The molecular basis of eucaryotic transcription. Cell Death Differ. 14:1989-1997.
30. Kress, T. L., Y. J. Yoon, and K. L. Mowry. 2004. Nuclear RNP complex assembly initiates cytoplasmic RNA localization. J. Cell Biol. 165:203-211.
31. Laloux, I., E. Dubois, M. Dewerchin, and E. Jacobs. 1990. TEC1, a gene involved in the activation of Ty1 and Ty1-mediated gene expression in Saccharomyces cerevisiae: cloning and molecular analysis. Mol. Cell. Biol. 10:3541-3550.
32. Levesque, K., M. Halvorsen, L. Abrahamyan, L. Chatel-Chaix, V. Poupon, H. Gordon, L. DesGroseillers, A. Gatignol, and A. J. Mouland. 2006. Trafficking of HIV-1 RNA is mediated by heterogeneous nuclear ribonucleoprotein A2 expression and impacts on viral assembly. Traffic 7:1177-1193.
33. Lingner, J., J. Kellermann, and W. Keller. 1991. Cloning and expression of the essential gene for poly(A) polymerase from S. cerevisiae. Nature 354:496-498.
34. Long, R. M., W. Gu, X. Meng, G. Gonsalvez, R. H. Singer, and P. Chartrand. 2001. An exclusively nuclear RNA-binding protein affects asymmetric localization of ASH1 mRNA and Ash1p in yeast. J. Cell Biol. 153:307-318.
35. Lotan, R., V. Goler-Baron, L. Duek, G. Haimovich, and M. Choder. 2007. The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms. J. Cell Biol. 178:1133-1143.
36. Malagon, F., M. L. Kireeva, B. K. Shafer, L. Lubkowska, M. Kashlev, and J. N. Strathern. 2006. Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil. Genetics 172:2201-2209.
37. Mellor, J., M. H. Malim, K. Gull, M. F. Tuite, S. McCready, T. Dibbayawan, S. M. Kingsman, and A. J. Kingsman. 1985. Reverse transcriptase activity and Ty RNA are associated with virus-like particles in yeast. Nature 318:583-586.
38. Melton, D. A. 1987. Translocation of a localized maternal mRNA to the vegetal pole of Xenopus oocytes. Nature 328:80-82.
39. Moore, S. P., L. A. Rinckel, and D. J. Garfinkel. 1998. A Ty1 integrase nuclear localization signal required for retrotransposition. Mol. Cell. Biol. 18:1105-1114.
40. Natsoulis, G., C. Dollard, F. Winston, and J. D. Boeke. 1991. The products of the SPT10 and SPT21 genes of Saccharomyces cerevisiae increase the amplitude of transcriptional regulation at a large number of unlinked loci. New Biol. 3:1249-1259.
41. Nonet, M., C. Scafe, J. Sexton, and R. Young. 1987. Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis. Mol. Cell. Biol. 7:1602-1611.
42. Nonet, M. L., and R. A. Young. 1989. Intragenic and extragenic suppressors of mutations in the heptapeptide repeat domain of Saccharomyces cerevisiae RNA polymerase II. Genetics 123:715-724.
43. Nott, A., H. Le Hir, and M. J. Moore. 2004. Splicing enhances translation in mammalian cells: an additional function of the exon junction complex. Genes Dev. 18:210-222.
44. Nourani, A., F. Robert, and F. Winston. 2006. Evidence that Spt2/Sin1, an HMG-like factor, plays roles in transcription elongation, chromatin structure, and genome stability in Saccharomyces cerevisiae. Mol. Cell. Biol. 26:1496-1509.
45. Nyswaner, K. M., M. A. Checkley, M. Yi, R. M. Stephens, and D. J. Garfinkel. 2008. Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis. Genetics 178:197-214.
46. Pan, F., S. Huttelmaier, R. H. Singer, and W. Gu. 2007. ZBP2 facilitates binding of ZBP1 to β-actin mRNA during transcription. Mol. Cell. Biol. 27:8340-8351.
47. Paquin, C. E., and V. M. Williamson. 1984. Temperature effects on the rate of Ty transposition. Science 226:53-55.
48. Patel, D., and J. S. Butler. 1992. Conditional defect in mRNA 3′ end processing caused by a mutation in the gene for poly(A) polymerase. Mol. Cell. Biol. 12:3297-3304.
49. Prather, D., N. J. Krogan, A. Emili, J. F. Greenblatt, and F. Winston. 2005. Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae. Mol. Cell. Biol. 25:10122-10135.
50. Proudfoot, N. J., A. Furger, and M. J. Dye. 2002. Integrating mRNA processing with transcription. Cell 108:501-512.
51. Roth, J. K. 2000. The yeast Ty virus-like particles. Yeast 16:785-795.
52. Rulli, S. J., Jr., C. S. Hibbert, J. Mirro, T. Pederson, S. Biswal, and A. Rein. 2007. Selective and nonselective packaging of cellular RNAs in retrovirus particles. J. Virol. 81:6623-6631.
53. Saguez, C., J. R. Olesen, and T. H. Jensen. 2005. Formation of export-competent mRNP: escaping nuclear destruction. Curr. Opin. Cell Biol. 17:287-293.
54. Santos-Rosa, H., H. Moreno, G. Simos, A. Segref, B. Fahrenkrog, N. Pante, and E. Hurt. 1998. Nuclear mRNA export requires complex formation between Mex67p and Mtr2p at the nuclear pores. Mol. Cell. Biol. 18:6826-6838.
55. Scholes, D. T., M. Banerjee, B. Bowen, and M. J. Curcio. 2001. Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance. Genetics 159:1449-1465.
56. + RNA and nuclear pores. EMBO J. 16:3256-3271.
57. Sherwood, P. W., and M. A. Osley. 1991. Histone regulatory (hir) mutations suppress delta insertion alleles in Saccharomyces cerevisiae. Genetics 128:729-738.
58. Sheth, U., and R. Parker. 2003. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300:805-808.
59. Takizawa, P. A., A. Sil, J. R. Swedlow, I. Herskowitz, and R. D. Vale. 1997. Actin-dependent localization of an RNA encoding a cell-fate determinant in yeast. Nature 389:90-93.
60. Thompson, C. M., A. J. Koleske, D. M. Chao, and R. A. Young. 1993. A multisubunit complex associated with the RNA polymerase II CTD and TATA-binding protein in yeast. Cell 73:1361-1375.
61. Thomsen, R., D. Libri, J. Boulay, M. Rosbash, and T. H. Jensen. 2003. Localization of nuclear retained mRNAs in Saccharomyces cerevisiae. RNA 9:1049-1057.
62. Thomsen, R., P. S. Nielsen, and T. H. Jensen. 2005. Dramatically improved RNA in situ hybridization signals using LNA-modified probes. RNA 11:1745-1748.
63. Ujvari, A., and D. S. Luse. 2004. Newly initiated RNA encounters a factor involved in splicing immediately upon emerging from within RNA polymerase II. J. Biol. Chem. 279:49773-49779.
64. Weeks, D. L., and D. A. Melton. 1987. A maternal mRNA localized to the animal pole of Xenopus eggs encodes a subunit of mitochondrial ATPase. Proc. Natl. Acad. Sci. USA 84:2798-2802.
65. Wileman, T. 2007. Aggresomes and pericentriolar sites of virus assembly: cellular defense or viral design? Annu. Rev. Microbiol. 61:149-167.
66. Winston, F., C. Dollard, E. A. Malone, J. Clare, J. G. Kapakos, P. Farabaugh, and P. L. Minehart. 1987. Three genes are required for transactivation of Ty transcription in yeast. Genetics 115:649-656.
67. Winston, F., K. J. Durbin, and G. R. Fink. 1984. The SPT3 gene is required for normal transcription of Ty elements in S. cerevisiae. Cell 39:675-682.
68. Xu, H., and J. D. Boeke. 1990. Localization of sequences required in cis for yeast Ty1 element transposition near the long terminal repeats: analysis of mini-Ty1 elements. Mol. Cell. Biol. 10:2695-2702.
69. Yamaguchi, Y., T. Narita, N. Inukai, T. Wada, and H. Handa. 2001. SPT genes: key players in the regulation of transcription, chromatin structure and other cellular processes. J. Biochem. 129:185-191.