Discovery of a new HBB haplotype w2 in a wild-derived house mouse, Mus musculus

Mammalian Genome

Volumn 19, Issue 3, 2008, Pages 155-162

  Sato, Jun J ^a   Shinohara, Akio ^b   Miyashita, Nobumoto ^c   Koshimoto, Chihiro ^b   Tsuchiya, Kimiyuki ^d   Nakahara, Ikuyo ^b,g   Morita, Tetsuo ^b   Yonekawa, Hiromichi ^e   Moriwaki, Kazuo ^f   Yamaguchi, Yasunori ^a  

^a FUKUYAMA UNIVERSITY   (Japan)

^b UNIVERSITY OF MIYAZAKI   (Japan)

^c KAGAWA UNIVERSITY   (Japan)

^d Applied Biology Co Ltd   (Japan)

^e TOKYO METROPOLITAN INSTITUTE OF MEDICAL SCIENCE   (Japan)

^f RIKEN TSUKUBA INSTITUTE   (Japan)

^g Miyazaki Prefectural Police   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULOSE ACETATE; HEMOGLOBIN BETA CHAIN; SPACER DNA;

ARTICLE; CONTROLLED STUDY; ELECTROPHORESIS; GENETIC ANALYSIS; GENOME ANALYSIS; HAPLOTYPE; KAZAKHSTAN; MALE; MOUSE; MOUSE STRAIN; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN POLYMORPHISM; WILD TYPE;

ANIMALS; DNA, INTERGENIC; GLOBINS; HAPLOTYPES; KAZAKHSTAN; MICE; POLYMORPHISM, GENETIC; PROTEIN SUBUNITS; RECOMBINATION, GENETIC; SPECIES SPECIFICITY;

MUS; MUS MUSCULUS;

EID: 52449135554     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-008-9094-0     Document Type: Article

References (35)

1. Abe K, Noguchi H, Tagawa K, Yuzuriha M, Toyoda A et al (2004) Contribution of Asian subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence - SNP analyses. Genome Res 14:2439-2447
2. Aguileta G, Bielawski JP, Yang Z (2006) Proposed standard nomenclature of the a- and b-globin gene families. Genes Genet Syst 81:367-371
3. Beck JA, Lloyd S, Hafezparast M, Lennon-Pierce M, Eppig JT et al (2000) Genealogies of mouse inbred strains. Nat Genet 24:23-25
4. Bonhomme F, Miyashita N, Boursot P, Catalan J, Moriwaki K (1989) Genetical variation and polyphyletic origin in Japanese Mus musculus. Heredity 63:299-308
5. Boursot P, Bonhomme F, Catalan J, Moriwaki K (1989) Variation of a Y chromosome repeated sequence across subspecies of Mus musculus. Heredity 63:289-297
6. Frazer KA, Wade CM, Hinds DA, Patil N, Cox DR et al (2004) Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6 Mb of mouse genome. Genome Res 14:1493-1500
7. Frazer KA, Eskin E, Kang HM, Bogue MA, Hinds DA et al (2007) A sequence-based variation map of 8.27 million SNPs in inbred mouse strains. Nature 448:1050-1053
8. Guenet JL, Bonhomme F (2003) Wild mice: an ever-increasing contribution to a popular mammalian model. Trends Genet 19:24-31
9. Hunt WG, Selander RK (1973) Biochemical genetics of hybridization in European house mice. Heredity 31:11-33
10. Ideraabdullah FY, de la Casa-Esperon E, Bell TA, Detwiler DA, Magnuson T et al (2004) Genetic and haplotype diversity among wild-derived mouse inbred strains. Genome Res 14:1880-1887
11. Iyer V, Struhl K (1995) Poly (dA: dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. EMBO J 14:2570-2579
12. w1, in Chinese wild mouse. Jpn J Genet 66:491-500
13. Kawashima T, Miyashita N, Tsuchiya K, Li H, Wang F et al (1995) Geographical distribution of the HBB haplotypes in the Mus musculus subspecies in Eastern Asia. Jpn J Genet 70:17-23
14. Kirkpatrick DT, Wang Y-H, Dominska M, Griffith JD, Petes TD (1999) Control of meiotic recombination and gene expression in yeast by a simple repetitive DNA sequence that excludes nucleosomes. Mol Cell Biol 19:7661-7671
15. Marshall JT Jr (1998) Identification and scientific names of Eurasian house mice and their European allies, subgenus Mus (Rodentia: Muridae). Privately printed at Springfield, VA, p. 80
16. Miyashita N, Moriwaki K, Minezawa M, Yonekawa H, Bonhomme F et al (1985) Allelic constitution of hemoglobin beta chain in wild population of the house mouse Mus musculus. Biochem Genet 23:975-986
17. Miyashita N, Kawashima T, Wang C-H, Jin M-L, Wang F et al (1994) Genetic polymorphisms of Hbb haplotypes in wild mice. In: Moriwaki K, Shiroishi T, Yonekawa H (eds) Genetics in wild mice. Its application to biomedical research. Tokyo, Japan Science Society Press pp 85-93
18. Moriwaki K (1994) Wild mouse from geneticist's viewpoint. In: Moriwaki K, Shiroishi T, Yonekawa H (eds) Genetics in wild mice: Its application to biomedical research. Tokyo, Japan Science Society Press pp xiii-xxv
19. Petes TD (2001) Meiotic recombination hot spot and cold spot. Nat Rev Genet 2:360-369
20. Petras ML, Martin JE (1969) Improved electrophoretic resolution of some hemoglobin variants in Mus musculus. Biochem Genet 3:303-309
21. Sage RD, Heyneman D, Kim K-C, Wilson AC (1986) Wormy mice in a hybrid zone. Nature 324:60-63
22. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
23. Sato JJ, Tsuru Y, Hirai K, Yamaguchi Y, Mekada K et al (2006) Further evidence for recombination mouse hemoglobin beta b1 and b2 genes based on the nucleotide sequences of introns, UTR, and intergenic spacer regions. Genes Genet Syst 81:201-209
24. Schultes NP, Szostak JW (1991) A poly(dA. dT) tract is a component of the recombination initiation site at the ARG4 lcus in Saccharomyces cereviseae. Mol Cell Biol 11:322-328
25. Shehee WR, Loeb DD, Adey NB, Burton FH, Casavant NC et al (1989) Nucleotide sequence of the BALB/c mouse globin complex. J Mol Biol 205:41-62
26. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4. Sunderland, MA, Sinauer Associates
27. w1. Mamm Genome 10:879-882
28. Vanlenberghe F, Boursot P, Nielsen JT, Bonhomme F (1988) A steep cline for mitochondrial DNA in Danish mice. Genet Res 52:185-193
29. Wade CM, Kulbokas EJ III, Kirby AW, Zody MC, Mullikin JC et al (2002) The mosaic structure of variation in the laboratory mouse genome. Nature 420:574-577
30. Wiltshire T, Pletcher MT, Batalov S, Barnes SW, Tarantino LM et al (2003) Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse. Proc Natl Acad Sci U S A 100:3380-3385
31. Wu T-C, Lichten M (1994) Meiosis-induced double-strand break sites determined by yeast chromatin structure. Science 263:515-518
32. Yang H, Bell TA, Churchill GA, de Villena FPM (2007) On the subspecific origin of the laboratory mouse. Nat Genet 39:1100-1107
33. Yonekawa H, Gotoh O, Tagashira Y, Matsushima Y, Shi L-I et al (1986) A hybrid origin of Japanese mice "Mus musculus molossinus." Curr Top Microb Immunol 127:62-67
34. Yonekawa H, Moriwaki K, Gotoh O, Miyashita N, Matsushima Y et al (1988) Hybrid origin of Japanese mice "Mus musculus molossinus": evidence from restriction analysis of mitochondrial DNA. Mol Biol Evol 5:63-78
35. Yonekawa H, Takahama S, Gotoh O, Miyashita N, Moriwaki K (1994) Genetic diversity and geographic distribution of Mus musculus subspecies based on the polymorphism of mitochondrial DNA. In: Moriwaki K, Shiroishi T, Yonekawa H (eds) Genetics in wild mice: Its application to biomedical research. Tokyo, Japan Science Society Press pp 25-40