A solvable model of the genesis of amino-acid sequences via coupled dynamics of folding and slow-genetic variation

Journal of Physics A: Mathematical and Theoretical

Volumn 41, Issue 28, 2008, Pages

  Rabello, S ^a   Coolen, A C C ^b,c   Perez Vicente C J ^d   Fraternali, F ^c  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b KING'S COLLEGE LONDON   (United Kingdom)

^c KING'S COLLEGE LONDON   (United Kingdom)

^d UNIVERSITY OF BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 52349116049     PISSN: 17518113     EISSN: 17518121     Source Type: Journal    
DOI: 10.1088/1751-8113/41/28/285004     Document Type: Article

References (44)

1. Guo W, Shea J E and Berry R S 2005 Ann. New York Acad. Sci. 1066 34-53
2. Echenique P 2007 Contemp. Phys. 48 81-108
3. Anfinsen C B 1973 Science 181 223-30
4. Daggett V 2006 Chem. Rev. 106 1898-916
5. Bryngelson J D and Wolynes P G 1987 Proc. Natl Acad. Sci. USA 84 7524-8
6. Derrida B 1981 Phys. Rev. B 24 2613-26
7. Lau K F and Dill K A 1989 Macromolecules 22 3986-97
8. Prentiss M C, Hardin C, Eastwood M P, Zong C and Wolynes P G 2006 J. Chem. Theory Comput. 2 705-16
9. Chen N-Y, Su Z-Y and Mou C-Y 2006 Phys. Rev. Lett. 96 078103
10. Yang J S, Chen W W, Skolnick J and Shakhnovich E I 2007 Structure 15 53-63
11. Aktürk E, Arkin H and Celik T 2007 Preprint cond.mat/0703606
12. Onuchic J N, Luthey-Schulten Z and Wolynes P G 1997 Annu. Rev. Chem. 48 545-600
13. Pande V S and Rokhsar D S 1999 Proc. Natl Acad. Sci USA 96 9062-7
14. Faccioli P, Sega M, Pederiva F and Orland H 2006 Phys. Rev. Lett. 97 108101
15. Dill K A 1984 Biochemistry 24 1501-9
16. Dill K A 1990 Biochemistry 29 7133-55
17. Kauzmann W 1959 Adv. Protein Chem. 14 1-63
18. Rose G D and Wolfenden R 1993 Annu. Rev. Biophys. Struct. 22 381-415
19. Sippi M J 1996 J. Mol. Biol. 260 644-8
20. Rose G, Flemming P, Banavar J R and Maritan A 2006 Proc. Natl Acad. Sci. USA 103 16623-33
21. Collet O 2005 Europhys. Lett. 72 301-7
22. Oberdorf R, Ferguson A, Jacobsen J L and Kondev A 2006 Phys. Rev. E 74 051801
23. Abkevich V I, Gutin A M and Shakhnovich E I 1994 J. Chem. Phys. 101 6052-62
24. Kenzaki H and Kikuchi M 2006 Chem. Phys. Lett. 427 414-7
25. Das P, Moll M, Stamati H, Kavraki L E and Clementi C 2006 Proc. Natl Acad. Sci. USA 103 9885-90
26. Skantzos N S, van Mourik J and Coolen A C C 2001 J. Phys. A: Math. Gen. 34 4437-57
27. Bascle J, Garel T and Orland H 1993 J. Phys. I France 3 259-75
28. Konkoli Z, Hertz J and Franz S 2001 Phys. Rev. E 64 051910
29. Wilder J and Shakhnovitch E I 2000 Phys. Rev. E 62 7100-10
30. Müller M, Mézard M and Montanari A 2004 J. Chem. Phys. 120 11233-55
31. Coolen A C C, Penney R W and Sherrington D 1993 Phys. Rev. B 48 16116-8
32. Penney R W, Coolen A C C and Sherrington D 1993 J. Phys. A: Math. Gen. 26 3681-95
33. Jongen G, Bollé D and Coolen A C C 1998 J. Phys. A: Math. Gen. 31 L737-42
34. Jongen G, Anemüller J, Bollé D, Coolen A C C and Pérez-Vicente C J 2001 J. Phys. A: Math. Gen. 34 3957-84
35. Chakravorty H, Coolen A C C and Sherrington D 2002 J. Phys. A: Math. Gen. 35 8647-71
36. Nikoletopoulos T and Coolen A C C 2004 J. Phys. A: Math. Gen. 37 8433-56
37. Nikoletopoulos T, Coolen A C C, Pérez-Castillo I, Skantzos N S, Hatchett J P L and Wemmenhove B 2004 J. Phys. A: Math. Gen. 37 6455-75
38. Hatchett J P L, Skantzos N S and Nikoletopoulos T 2005 Phys. Rev. E 72 066105
39. Heylen R, Skantzos N S, Busquets Blanco J and Bollé D 2006 Phys. Rev. E 73 016138
40. Parker J M R 1999 J. Comput. Chem. 20 947-55
41. Murzin A G, Brenner S E, Hubbard T and Chothia C 1995 J. Mol. Biol. 247 536-40
42. Andreeva A, Howorth D, Chandonia J M, Brenner S E, Hubbard T J, Chothia C and Murzin A G 2008 Nucl. Acids. Res. 36 D419-25
43. Eisenberg D, Schwarz E, Komarony M and Wall R 1984 J. Mol. Biol. 179 125-42
44. Moelbert S, Emberly E and Tang C 2004 Protein Sci. 13 752-62