메뉴 건너뛰기




Volumn 3, Issue 8, 2008, Pages

Genomic diversity within the enterobacter cloacae complex

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENETICS; CLADISTICS; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; ENTEROBACTER; ENTEROBACTER CLOACAE; ENTEROBACTER HORMAECHEI; GENE CLUSTER; GENETIC MARKER; GENETIC VARIABILITY; MICROARRAY ANALYSIS; MOLECULAR EVOLUTION; MULTILOCUS SEQUENCE TYPING; NONHUMAN; SPECIES COMPARISON; SPECIES IDENTIFICATION; BACTERIAL GENOME; CLASSIFICATION; DNA SEQUENCE; GENETICS; GENOTYPE; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY;

EID: 51849145126     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0003018     Document Type: Article
Times cited : (118)

References (43)
  • 1
    • 0019968943 scopus 로고
    • Escherichia vulneris: A new species of Enterobacteriaceae associated with human wounds
    • Brenner DJ, McWhorter AC, Knutson JK, Steigerwalt AG (1982) Escherichia vulneris: a new species of Enterobacteriaceae associated with human wounds. J Clin Microbiol 15: 1133-1140.
    • (1982) J Clin Microbiol , vol.15 , pp. 1133-1140
    • Brenner, D.J.1    McWhorter, A.C.2    Knutson, J.K.3    Steigerwalt, A.G.4
  • 2
    • 0022624380 scopus 로고
    • Enterobacter asburiae sp. nov., a new species found in clinical specimens, and reassignment of Erwinia dissolvens and Erwinia nimipressuralis to the genus Enterobacter as Enterobacter dissolvens comb. nov. and Enterobacter nimipressuralis comb. nov
    • Bremer DJ, McWhorter AC, Kai A, Steigerwalt AG, Farmer JJ III (1986) Enterobacter asburiae sp. nov., a new species found in clinical specimens, and reassignment of Erwinia dissolvens and Erwinia nimipressuralis to the genus Enterobacter as Enterobacter dissolvens comb. nov. and Enterobacter nimipressuralis comb. nov. J Clin Microbiol 23: 1114-1120.
    • (1986) J Clin Microbiol , vol.23 , pp. 1114-1120
    • Bremer, D.J.1    McWhorter, A.C.2    Kai, A.3    Steigerwalt, A.G.4    Farmer III, J.J.5
  • 3
    • 9944235795 scopus 로고    scopus 로고
    • Development of a fast DNA-DNA hybridization method based on melting profiles in rnicroplates
    • Mehlen A, Goeldner M, Ried S, Stindl S, Ludwig W, et al. (2004) Development of a fast DNA-DNA hybridization method based on melting profiles in rnicroplates. Syst Appl Microbiol 27: 689-695.
    • (2004) Syst Appl Microbiol , vol.27 , pp. 689-695
    • Mehlen, A.1    Goeldner, M.2    Ried, S.3    Stindl, S.4    Ludwig, W.5
  • 4
    • 16244365869 scopus 로고    scopus 로고
    • Reassignment of Enterobacter dissolvens to Enterobacter cloacae as E. cloacae subspecies dissolvens comb. nov and emended description of Enterobacter asburiae and Enterobacter kobei
    • Hoffmann H, Stindl S, Ludwig W, Stumpf A, Mehlen A, et al. (2005) Reassignment of Enterobacter dissolvens to Enterobacter cloacae as E. cloacae subspecies dissolvens comb. nov and emended description of Enterobacter asburiae and Enterobacter kobei. Systematic and Applied Microbiology 28: 196-205.
    • (2005) Systematic and Applied Microbiology , vol.28 , pp. 196-205
    • Hoffmann, H.1    Stindl, S.2    Ludwig, W.3    Stumpf, A.4    Mehlen, A.5
  • 5
    • 8244233838 scopus 로고    scopus 로고
    • Enterobacter spp.: Pathogens poised to flourish at the turn of the century
    • Sanders WE Jr, Sanders CC (1997) Enterobacter spp.: pathogens poised to flourish at the turn of the century. Clin Microbiol Rev 10: 220-241.
    • (1997) Clin Microbiol Rev , vol.10 , pp. 220-241
    • Sanders Jr, W.E.1    Sanders, C.C.2
  • 6
    • 0037325617 scopus 로고    scopus 로고
    • Global epidemiology of antimicrobial resistance among community-acquired, and nosocomial pathogens: A five-year summary from the SENTRY Antimicrobial Surveillance Program (1997-2001)
    • Jones RN (2003) Global epidemiology of antimicrobial resistance among community-acquired, and nosocomial pathogens: a five-year summary from the SENTRY Antimicrobial Surveillance Program (1997-2001). Semin Respir Crit Care Med 24: 121-134.
    • (2003) Semin Respir Crit Care Med , vol.24 , pp. 121-134
    • Jones, R.N.1
  • 7
    • 3342962524 scopus 로고    scopus 로고
    • Assessment of pathogen occurrences and resistance profiles among infectcd patients in the intensive care unit: Report from the SENTRY Antimicrobial Surveillance Program (North America, 2001)
    • Streit JM, Jones RN, Sader HS, Fritsche TR (2004) Assessment of pathogen occurrences and resistance profiles among infectcd patients in the intensive care unit: report from the SENTRY Antimicrobial Surveillance Program (North America, 2001). Int J Antimicrob Agents 24: 111-118.
    • (2004) Int J Antimicrob Agents , vol.24 , pp. 111-118
    • Streit, J.M.1    Jones, R.N.2    Sader, H.S.3    Fritsche, T.R.4
  • 8
    • 45549104680 scopus 로고    scopus 로고
    • Molecular identification of coliform bacteria isolated from drinking water reservoirs with traditional methods and the Colilert-18 system
    • Kämpfer P, Nienhüser A, Packroff G, Wernicke F, Mehling A, et al. (2007) Molecular identification of coliform bacteria isolated from drinking water reservoirs with traditional methods and the Colilert-18 system. Int J Hyg Environ Health 211: 374-384.
    • (2007) Int J Hyg Environ Health , vol.211 , pp. 374-384
    • Kämpfer, P.1    Nienhüser, A.2    Packroff, G.3    Wernicke, F.4    Mehling, A.5
  • 9
    • 0141816837 scopus 로고    scopus 로고
    • Population genetics of the nomenspecies Enterobacter cloacae
    • Hoffmann H, Roggenkamp A (2003) Population genetics of the nomenspecies Enterobacter cloacae. Appl Environ Microbiol 69: 5306-5318.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5306-5318
    • Hoffmann, H.1    Roggenkamp, A.2
  • 11
    • 0037337509 scopus 로고    scopus 로고
    • Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays
    • Dobrindt U, Agerer F, Michaelis K, Janka A, Buchrieser C, et al. (2003) Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays. J Bacteriol 185: 1831-1840.
    • (2003) J Bacteriol , vol.185 , pp. 1831-1840
    • Dobrindt, U.1    Agerer, F.2    Michaelis, K.3    Janka, A.4    Buchrieser, C.5
  • 12
    • 0035902534 scopus 로고    scopus 로고
    • Evolutionary genomics, of Staphylococcus aureus: Insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic
    • Fitzgerald JR, Sturdevant DE, Mackie SM, Gill SR, Musser JM (2001) Evolutionary genomics, of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic. Proc Natl Acad Sci U S A 98: 8821-8826.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 8821-8826
    • Fitzgerald, J.R.1    Sturdevant, D.E.2    Mackie, S.M.3    Gill, S.R.4    Musser, J.M.5
  • 13
    • 0037407566 scopus 로고    scopus 로고
    • Genome diversification in Staphylococcus aureus: Molecular evolution of a highly variable chromosomal region encoding the Staphylococcal exotoxin-like family of proteins
    • Fitzgerald JR, Reid SD, Ruotsalainen E, Tripp TJ, Liu M, et al. (2003) Genome diversification in Staphylococcus aureus: Molecular evolution of a highly variable chromosomal region encoding the Staphylococcal exotoxin-like family of proteins. Infect Immun 71: 2827-2838.
    • (2003) Infect Immun , vol.71 , pp. 2827-2838
    • Fitzgerald, J.R.1    Reid, S.D.2    Ruotsalainen, E.3    Tripp, T.J.4    Liu, M.5
  • 14
    • 2942571207 scopus 로고    scopus 로고
    • Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray
    • Fukiya S, Mizoguchi H, Tobe T, Mori H (2004) Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray. J Bacteriol 186: 3911-3921.
    • (2004) J Bacteriol , vol.186 , pp. 3911-3921
    • Fukiya, S.1    Mizoguchi, H.2    Tobe, T.3    Mori, H.4
  • 15
    • 0035807814 scopus 로고    scopus 로고
    • Helicobacter pylori genetic diversity within the gastric niche of a single human host
    • Israel DA, Salama N, Krishna U, Rieger UM, Atherton JC, et al. (2001) Helicobacter pylori genetic diversity within the gastric niche of a single human host. Proc Natl Acad Sci U S A 98: 14625-14630.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 14625-14630
    • Israel, D.A.1    Salama, N.2    Krishna, U.3    Rieger, U.M.4    Atherton, J.C.5
  • 16
    • 33846483575 scopus 로고    scopus 로고
    • Leavis HL, Willems RJL, van Wamel WJB, Schuren FHJ, et al. (2007) Insertion sequence-driven diversification creates a globally dispersed emerging multiresistant subspecies of E. faecium. PLoS Pathog 3: e7. doi:10.1371/journal.ppat.0030007.
    • Leavis HL, Willems RJL, van Wamel WJB, Schuren FHJ, et al. (2007) Insertion sequence-driven diversification creates a globally dispersed emerging multiresistant subspecies of E. faecium. PLoS Pathog 3: e7. doi:10.1371/journal.ppat.0030007.
  • 17
    • 30744457635 scopus 로고    scopus 로고
    • Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes
    • Lindsay JA, Moore CE, Day NP, Peacock SJ, Witney AA, et al. (2006) Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes. J Bacteriol 188: 669-676.
    • (2006) J Bacteriol , vol.188 , pp. 669-676
    • Lindsay, J.A.1    Moore, C.E.2    Day, N.P.3    Peacock, S.J.4    Witney, A.A.5
  • 18
    • 0037173117 scopus 로고    scopus 로고
    • Evolutionary genomics of Salmonella: Gene acquisitions revealed by microarray analysis
    • Porwollik S, Wong RMY, McClelland M (2002) Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc Natl Acad Sci U S A 99: 8956-8961.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 8956-8961
    • Porwollik, S.1    Wong, R.M.Y.2    McClelland, M.3
  • 19
  • 20
    • 35648982422 scopus 로고    scopus 로고
    • Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing
    • Salerno A, Delétoile A, Lefevre M, Ciznar I, Krovacek K, et al. (2007) Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing. J Bacteriol 189: 7808-7818.
    • (2007) J Bacteriol , vol.189 , pp. 7808-7818
    • Salerno, A.1    Delétoile, A.2    Lefevre, M.3    Ciznar, I.4    Krovacek, K.5
  • 21
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 22
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 23
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens
    • Feil EJ, Spratt BG (2001) Recombination and the population structures of bacterial pathogens. Annu Rev Microbiol 55: 561-590.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 24
    • 0035815347 scopus 로고    scopus 로고
    • A survey of the Leishmania major Friedlin strain V1 genome by shotgun sequencing: A resource for DNA microarrays and expression profiling
    • Akopyants NS, Clifton SW, Martin J, Pape D, Wylie T, et al. (2001) A survey of the Leishmania major Friedlin strain V1 genome by shotgun sequencing: a resource for DNA microarrays and expression profiling. Mol Biochem Parasitol 113: 337-340.
    • (2001) Mol Biochem Parasitol , vol.113 , pp. 337-340
    • Akopyants, N.S.1    Clifton, S.W.2    Martin, J.3    Pape, D.4    Wylie, T.5
  • 25
    • 0029148096 scopus 로고
    • Synthesis of pyrroloquinoline quinone in vivo and in vitro and detection of an intermediate in the biosynthetic pathway
    • Velterop JS, Sellink E, Meulenberg JJM, David S, Bulder I, et al. (1995) Synthesis of pyrroloquinoline quinone in vivo and in vitro and detection of an intermediate in the biosynthetic pathway. J Bacteriol 177: 5088-5098.
    • (1995) J Bacteriol , vol.177 , pp. 5088-5098
    • Velterop, J.S.1    Sellink, E.2    Meulenberg, J.J.M.3    David, S.4    Bulder, I.5
  • 26
    • 9644310554 scopus 로고    scopus 로고
    • Pyrroloquinoline-quinone: A reactive oxygen species scavenger in bacteria
    • Misra HS, Khairnar NP, Barik A, Indira PK, Mohan H, et al. (2004) Pyrroloquinoline-quinone: a reactive oxygen species scavenger in bacteria. FEBS Lett 578: 26-30.
    • (2004) FEBS Lett , vol.578 , pp. 26-30
    • Misra, H.S.1    Khairnar, N.P.2    Barik, A.3    Indira, P.K.4    Mohan, H.5
  • 27
    • 0025878804 scopus 로고
    • Nutritional complementation of oxidative glucose metabolism in Escherichia coli via pyrroloquinoline quinone-dependent glucose dehydrogenase and the Entner-Doudoroff pathway
    • Adamowicz M, Conway T, Nickerson KW (1991) Nutritional complementation of oxidative glucose metabolism in Escherichia coli via pyrroloquinoline quinone-dependent glucose dehydrogenase and the Entner-Doudoroff pathway. Appl Environ Microbiol 57: 2012-2015.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 2012-2015
    • Adamowicz, M.1    Conway, T.2    Nickerson, K.W.3
  • 28
    • 34248512130 scopus 로고    scopus 로고
    • Failure to control an outbreak of qnrA1-positive multidrug-resistant Enterobacter cloacae infection despite adequate implementation of recommended infection control measures
    • Paauw A, Verhoef J, Fluit AC, Blok HEM, Hopmans TEM, et al. (2007) Failure to control an outbreak of qnrA1-positive multidrug-resistant Enterobacter cloacae infection despite adequate implementation of recommended infection control measures. J Clin Microbiol 45: 1420-1425.
    • (2007) J Clin Microbiol , vol.45 , pp. 1420-1425
    • Paauw, A.1    Verhoef, J.2    Fluit, A.C.3    Blok, H.E.M.4    Hopmans, T.E.M.5
  • 29
    • 32344450657 scopus 로고    scopus 로고
    • Extensive hospital-wide spread of a multidrug-resistant Enterobacter cloacae clone, with late detection due to a variable antibiogram and frequent patient transfer
    • Leverstein-van Hall MA, Blok HEM, Paauw A, Fluit AC, Troelstra A, et al. (2006) Extensive hospital-wide spread of a multidrug-resistant Enterobacter cloacae clone, with late detection due to a variable antibiogram and frequent patient transfer. J Clin Microbiol 44: 518-524.
    • (2006) J Clin Microbiol , vol.44 , pp. 518-524
    • Leverstein-van Hall, M.A.1    Blok, H.E.M.2    Paauw, A.3    Fluit, A.C.4    Troelstra, A.5
  • 30
    • 33646598389 scopus 로고    scopus 로고
    • Enterobacter cloacae outbreak and emergence of quinolone resistance gene in Dutch hospital
    • Paauw A, Fluit AC, Verhoef J, Leverstein-van Hall MA (2006) Enterobacter cloacae outbreak and emergence of quinolone resistance gene in Dutch hospital. Emerg Infect Dis 12: 807-812.
    • (2006) Emerg Infect Dis , vol.12 , pp. 807-812
    • Paauw, A.1    Fluit, A.C.2    Verhoef, J.3    Leverstein-van Hall, M.A.4
  • 31
    • 51849114613 scopus 로고    scopus 로고
    • Hall TA (1999) BioEdit:a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
    • Hall TA (1999) BioEdit:a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
  • 32
    • 35948940118 scopus 로고    scopus 로고
    • The rise and spread of a new pathogen: Seroresistant Moraxella catarrhalis
    • Wirth T, Morelli G, Kusecek B, van Belkum A, van der Schee C, et al. (2007) The rise and spread of a new pathogen: seroresistant Moraxella catarrhalis. Genome Res 17: 1647-1656.
    • (2007) Genome Res , vol.17 , pp. 1647-1656
    • Wirth, T.1    Morelli, G.2    Kusecek, B.3    van Belkum, A.4    van der Schee, C.5
  • 33
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Software package for data analysis in molecular biology and evolution
    • Xia X, Xie Z (2001) DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92: 371-373.
    • (2001) J Hered , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 34
  • 35
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • Didelot X, Falush D (2007) Inference of bacterial microevolution using multilocus sequence data. Genetics 175: 1251-1266.
    • (2007) Genetics , vol.175 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 36
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
    • (2006) Mol Biol Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 37
    • 8644289234 scopus 로고    scopus 로고
    • Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing
    • Borucki MK, Kim SH, Call DR, Smole SC, Pagotto F (2004) Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing. J Clin Microbiol 42: 5270-5276.
    • (2004) J Clin Microbiol , vol.42 , pp. 5270-5276
    • Borucki, M.K.1    Kim, S.H.2    Call, D.R.3    Smole, S.C.4    Pagotto, F.5
  • 38
    • 34248336224 scopus 로고    scopus 로고
    • Determination of the relationship between group A streptococcal genome content, M type, and toxic shock syndrome by a mixed genome microarray
    • Vlaminckx BJM, Schuren FHJ, Montijn RC, Caspers MPM, Fluit AC, et al. (2007) Determination of the relationship between group A streptococcal genome content, M type, and toxic shock syndrome by a mixed genome microarray. Infect Immun 75: 2603-2611.
    • (2007) Infect Immun , vol.75 , pp. 2603-2611
    • Vlaminckx, B.J.M.1    Schuren, F.H.J.2    Montijn, R.C.3    Caspers, M.P.M.4    Fluit, A.C.5
  • 39
    • 0037195198 scopus 로고    scopus 로고
    • Improved analytical methods for microarray-based genome-composition analysis
    • RESEARCH0065
    • Kim CC, Joyce EA, Chan K, Falkow S (2002) Improved analytical methods for microarray-based genome-composition analysis. Genome Biol 3: RESEARCH0065.
    • (2002) Genome Biol , vol.3
    • Kim, C.C.1    Joyce, E.A.2    Chan, K.3    Falkow, S.4
  • 40
    • 51849120610 scopus 로고    scopus 로고
    • Felsenstein J (2005) 2005. PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle. Cladistics
    • Felsenstein J (2005) 2005. PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle. Cladistics.
  • 41
    • 0029796695 scopus 로고    scopus 로고
    • Enterobacter kobei sp nov, a new species of the family Enterobacteriaceae resembling Enterobacter cloacae
    • Kosako Y, Tamura K, Sakazaki R, Miki K (1996) Enterobacter kobei sp nov, a new species of the family Enterobacteriaceae resembling Enterobacter cloacae. Current Microbiology 33: 261-265.
    • (1996) Current Microbiology , vol.33 , pp. 261-265
    • Kosako, Y.1    Tamura, K.2    Sakazaki, R.3    Miki, K.4
  • 42
    • 16244410495 scopus 로고    scopus 로고
    • Description of Enterobacter ludwigii sp. nov., a novel Enterobacter species of clinical relevance
    • Hoffmann H, Stindl S, Stumpf A, Mehlen A, Monget D, et al. (2005) Description of Enterobacter ludwigii sp. nov., a novel Enterobacter species of clinical relevance. Syst Appl Microbiol 28: 206-212.
    • (2005) Syst Appl Microbiol , vol.28 , pp. 206-212
    • Hoffmann, H.1    Stindl, S.2    Stumpf, A.3    Mehlen, A.4    Monget, D.5
  • 43
    • 22144494174 scopus 로고    scopus 로고
    • Hoffmann H, Stindl S, Ludwig W, Stumpf A, Mehlen A, et al. (2005) Enterobacter hormaechei subsp. oharae subsp. nov., E. hormaechei subsp. hormaechei comb. nov., and E. hormaechei subsp. steigerwaltii subsp. nov., three new subspecies of clinical importance. J Clin Microbiol 43: 3297-3303.
    • Hoffmann H, Stindl S, Ludwig W, Stumpf A, Mehlen A, et al. (2005) Enterobacter hormaechei subsp. oharae subsp. nov., E. hormaechei subsp. hormaechei comb. nov., and E. hormaechei subsp. steigerwaltii subsp. nov., three new subspecies of clinical importance. J Clin Microbiol 43: 3297-3303.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.