-
1
-
-
0031815749
-
How do small single-domain proteins fold?
-
Jackson S.E. How do small single-domain proteins fold?. Fold. Des. 3 (1998) R81-R91
-
(1998)
Fold. Des.
, vol.3
-
-
Jackson, S.E.1
-
2
-
-
0023449962
-
Spin glasses and the statistical mechanics of protein folding
-
Bryngelson J.D., and Wolynes P.G. Spin glasses and the statistical mechanics of protein folding. Proc. Natl Acad. Sci. USA 84 (1987) 7524-7528
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 7524-7528
-
-
Bryngelson, J.D.1
Wolynes, P.G.2
-
3
-
-
33747592347
-
The experimental survey of protein-folding energy landscapes
-
Oliveberg M., and Wolynes P.G. The experimental survey of protein-folding energy landscapes. Quart. Rev. Biophys. 38 (2005) 245-288
-
(2005)
Quart. Rev. Biophys.
, vol.38
, pp. 245-288
-
-
Oliveberg, M.1
Wolynes, P.G.2
-
4
-
-
0020972782
-
Theoretical studies of protein folding
-
Go N. Theoretical studies of protein folding. Annu. Rev. Biophys. Bioeng. 12 (1983) 183-210
-
(1983)
Annu. Rev. Biophys. Bioeng.
, vol.12
, pp. 183-210
-
-
Go, N.1
-
5
-
-
33846916730
-
Malleability of protein folding pathways: a simple reason for complex behaviour
-
Lindberg M.O., and Oliveberg M. Malleability of protein folding pathways: a simple reason for complex behaviour. Curr. Opin. Struct. Biol. 17 (2007) 21-29
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 21-29
-
-
Lindberg, M.O.1
Oliveberg, M.2
-
6
-
-
36549027487
-
Plasticity within the obligatory folding nucleus of an immunoglobulin-like domain
-
Lappalainen I., Hurley M.G., and Clarke J. Plasticity within the obligatory folding nucleus of an immunoglobulin-like domain. J. Mol. Biol. 375 (2008) 547-559
-
(2008)
J. Mol. Biol.
, vol.375
, pp. 547-559
-
-
Lappalainen, I.1
Hurley, M.G.2
Clarke, J.3
-
7
-
-
2442659128
-
Scattered Hammond plots reveal second level of site-specific information in protein folding: phi′ (beta++)
-
Hedberg L., and Oliveberg M. Scattered Hammond plots reveal second level of site-specific information in protein folding: phi′ (beta++). Proc. Natl Acad. Sci. USA 101 (2004) 7606-7611
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 7606-7611
-
-
Hedberg, L.1
Oliveberg, M.2
-
8
-
-
0029041315
-
Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfolding/folding of barnase
-
Matthews J.M., and Fersht A.R. Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfolding/folding of barnase. Biochemistry 34 (1995) 6805-6814
-
(1995)
Biochemistry
, vol.34
, pp. 6805-6814
-
-
Matthews, J.M.1
Fersht, A.R.2
-
10
-
-
0029760326
-
Different folding transition states may result in the same native structure
-
Viguera A.R., Serrano L., and Wilmanns M. Different folding transition states may result in the same native structure. Nature Struct. Biol. 3 (1996) 874-880
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 874-880
-
-
Viguera, A.R.1
Serrano, L.2
Wilmanns, M.3
-
11
-
-
33645227425
-
Identification of the minimal protein-folding nucleus through loop-entropy perturbations
-
Lindberg M.O., Haglund E., Hubner I.A., Shakhnovich E.I., and Oliveberg M. Identification of the minimal protein-folding nucleus through loop-entropy perturbations. Proc. Natl Acad. Sci. USA 103 (2006) 4083-4088
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 4083-4088
-
-
Lindberg, M.O.1
Haglund, E.2
Hubner, I.A.3
Shakhnovich, E.I.4
Oliveberg, M.5
-
12
-
-
0033592876
-
From snapshot to movie: phi analysis of protein folding transition states taken one step further
-
Ternstrom T., Mayor U., Akke M., and Oliveberg M. From snapshot to movie: phi analysis of protein folding transition states taken one step further. Proc. Natl Acad. Sci. USA 96 (1999) 14854-14859
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 14854-14859
-
-
Ternstrom, T.1
Mayor, U.2
Akke, M.3
Oliveberg, M.4
-
13
-
-
1842635616
-
Thermodynamic characterisation of two transition states along parallel protein folding pathways
-
Wright C.F., Steward A., and Clarke J. Thermodynamic characterisation of two transition states along parallel protein folding pathways. J. Mol. Biol. 338 (2004) 445-451
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 445-451
-
-
Wright, C.F.1
Steward, A.2
Clarke, J.3
-
14
-
-
0033200251
-
Folding studies of immunoglobulin-like beta-sandwich proteins suggest that they share a common folding pathway
-
Clarke J., Cota E., Fowler S.B., and Hamill S.J. Folding studies of immunoglobulin-like beta-sandwich proteins suggest that they share a common folding pathway. Structure 7 (1999) 1145-1153
-
(1999)
Structure
, vol.7
, pp. 1145-1153
-
-
Clarke, J.1
Cota, E.2
Fowler, S.B.3
Hamill, S.J.4
-
15
-
-
13844299144
-
The family feud: do proteins with similar structures fold via the same pathway?
-
Zarrine-Afsar A., Larson S.M., and Davidson A.R. The family feud: do proteins with similar structures fold via the same pathway?. Curr. Opin. Struct. Biol. 15 (2005) 42-49
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 42-49
-
-
Zarrine-Afsar, A.1
Larson, S.M.2
Davidson, A.R.3
-
16
-
-
0345255608
-
Unifying features in protein-folding mechanisms
-
Gianni S., Guydosh N.R., Khan F., Caldas T.D., Mayor U., White G.W., et al. Unifying features in protein-folding mechanisms. Proc. Natl Acad. Sci. USA 100 (2003) 13286-13291
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13286-13291
-
-
Gianni, S.1
Guydosh, N.R.2
Khan, F.3
Caldas, T.D.4
Mayor, U.5
White, G.W.6
-
17
-
-
0027171034
-
Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding
-
Matouschek A., and Fersht A.R. Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding. Proc. Natl Acad. Sci. USA 90 (1993) 7814-7818
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 7814-7818
-
-
Matouschek, A.1
Fersht, A.R.2
-
18
-
-
0037225280
-
Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding
-
Sanchez I.E., and Kiefhaber T. Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding. J. Mol. Biol. 325 (2003) 367-376
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 367-376
-
-
Sanchez, I.E.1
Kiefhaber, T.2
-
19
-
-
0036293485
-
Conformational plasticity in folding of the split beta-alpha-beta protein S6: evidence for burst-phase disruption of the native state
-
Otzen D.E., and Oliveberg M. Conformational plasticity in folding of the split beta-alpha-beta protein S6: evidence for burst-phase disruption of the native state. J. Mol. Biol. 317 (2002) 613-827
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 613-827
-
-
Otzen, D.E.1
Oliveberg, M.2
-
20
-
-
0034671177
-
The SH3-fold family: experimental evidence and prediction of variations in the folding pathways
-
Guerois R., and Serrano L. The SH3-fold family: experimental evidence and prediction of variations in the folding pathways. J. Mol. Biol. 304 (2000) 967-982
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 967-982
-
-
Guerois, R.1
Serrano, L.2
-
21
-
-
0029922493
-
Foldons, protein structural modules, and exons
-
Panchenko A.R., Luthey-Schulten Z., and Wolynes P.G. Foldons, protein structural modules, and exons. Proc. Natl Acad. Sci. USA 93 (1996) 2008-2013
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 2008-2013
-
-
Panchenko, A.R.1
Luthey-Schulten, Z.2
Wolynes, P.G.3
-
22
-
-
33751411136
-
Folding of S6 structures with divergent amino acid composition: pathway flexibility within partly overlapping foldons
-
Olofsson M., Hansson S., Hedberg L., Logan D.T., and Oliveberg M. Folding of S6 structures with divergent amino acid composition: pathway flexibility within partly overlapping foldons. J. Mol. Biol. 365 (2007) 237-248
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 237-248
-
-
Olofsson, M.1
Hansson, S.2
Hedberg, L.3
Logan, D.T.4
Oliveberg, M.5
-
23
-
-
0025698613
-
Transient folding intermediates characterized by protein engineering
-
Matouschek A., Kellis Jr. J.T., Serrano L., Bycroft M., and Fersht A.R. Transient folding intermediates characterized by protein engineering. Nature 346 (1990) 440-445
-
(1990)
Nature
, vol.346
, pp. 440-445
-
-
Matouschek, A.1
Kellis Jr., J.T.2
Serrano, L.3
Bycroft, M.4
Fersht, A.R.5
-
24
-
-
0036183221
-
Im7 folding mechanism: misfolding on a path to the native state
-
Capaldi A.P., Kleanthous C., and Radford S.E. Im7 folding mechanism: misfolding on a path to the native state. Nature Struct. Biol. 9 (2002) 209-216
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 209-216
-
-
Capaldi, A.P.1
Kleanthous, C.2
Radford, S.E.3
-
25
-
-
2942617191
-
Is an intermediate state populated on the folding pathway of ubiquitin?
-
Went H.M., Benitez-Cardoza C.G., and Jackson S.E. Is an intermediate state populated on the folding pathway of ubiquitin?. FEBS Lett. 567 (2004) 333-338
-
(2004)
FEBS Lett.
, vol.567
, pp. 333-338
-
-
Went, H.M.1
Benitez-Cardoza, C.G.2
Jackson, S.E.3
-
26
-
-
16344382372
-
Protein folding: the stepwise assembly of foldon units
-
Maity H., Maity M., Krishna M.M., Mayne L., and Englander S.W. Protein folding: the stepwise assembly of foldon units. Proc. Natl Acad. Sci. USA 102 (2005) 4741-4746
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 4741-4746
-
-
Maity, H.1
Maity, M.2
Krishna, M.M.3
Mayne, L.4
Englander, S.W.5
-
27
-
-
0034674162
-
The structure of a LysM domain from E. coli membrane-bound lytic murein transglycosylase D (MltD)
-
Bateman A., and Bycroft M. The structure of a LysM domain from E. coli membrane-bound lytic murein transglycosylase D (MltD). J. Mol. Biol. 299 (2000) 1113-1119
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1113-1119
-
-
Bateman, A.1
Bycroft, M.2
-
28
-
-
33745618137
-
Phi-analysis of the folding of the B domain of protein A using multiple optical probes
-
Sato S., Religa T.L., and Fersht A.R. Phi-analysis of the folding of the B domain of protein A using multiple optical probes. J. Mol. Biol. 360 (2006) 850-864
-
(2006)
J. Mol. Biol.
, vol.360
, pp. 850-864
-
-
Sato, S.1
Religa, T.L.2
Fersht, A.R.3
-
29
-
-
0023783477
-
Conformational stability and activity of ribonuclease T1 with zero, one, and two intact disulfide bonds
-
Pace C.N., Grimsley G.R., Thomson J.A., and Barnett B.J. Conformational stability and activity of ribonuclease T1 with zero, one, and two intact disulfide bonds. J. Biol. Chem. 263 (1988) 11820-11825
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 11820-11825
-
-
Pace, C.N.1
Grimsley, G.R.2
Thomson, J.A.3
Barnett, B.J.4
-
30
-
-
0024977347
-
Low-temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations
-
Chen B.L., Baase W.A., and Schellman J.A. Low-temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations. Biochemistry 28 (1989) 691-699
-
(1989)
Biochemistry
, vol.28
, pp. 691-699
-
-
Chen, B.L.1
Baase, W.A.2
Schellman, J.A.3
-
31
-
-
0026345750
-
Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition
-
Jackson S.E., and Fersht A.R. Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition. Biochemistry 30 (1991) 10428-10435
-
(1991)
Biochemistry
, vol.30
, pp. 10428-10435
-
-
Jackson, S.E.1
Fersht, A.R.2
-
32
-
-
20444409471
-
The structure of the major transition state for folding of an FF domain from experiment and simulation
-
Jemth P., Day R., Gianni S., Khan F., Allen M., Daggett V., and Fersht A.R. The structure of the major transition state for folding of an FF domain from experiment and simulation. J. Mol. Biol. 350 (2005) 363-378
-
(2005)
J. Mol. Biol.
, vol.350
, pp. 363-378
-
-
Jemth, P.1
Day, R.2
Gianni, S.3
Khan, F.4
Allen, M.5
Daggett, V.6
Fersht, A.R.7
-
33
-
-
2442683149
-
The folding transition state of the cold shock protein is strongly polarized
-
Garcia-Mira M.M., Boehringer D., and Schmid F.X. The folding transition state of the cold shock protein is strongly polarized. J. Mol. Biol. 339 (2004) 555-569
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 555-569
-
-
Garcia-Mira, M.M.1
Boehringer, D.2
Schmid, F.X.3
-
34
-
-
0032750509
-
The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved
-
Martinez J.C., and Serrano L. The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved. Nat. Struct. Biol. 6 (1999) 1010-1016
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 1010-1016
-
-
Martinez, J.C.1
Serrano, L.2
-
35
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco K.W., Simons K.T., and Baker D. Contact order, transition state placement and the refolding rates of single domain proteins. J. Mol. Biol. 277 (1998) 985-994
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
36
-
-
0042510944
-
Contact order revisited: influence of protein size on the folding rate
-
Ivankov D.N., Garbuzynskiy S.O., Alm E., Plaxco K.W., Baker D., and Finkelstein A.V. Contact order revisited: influence of protein size on the folding rate. Protein Sci. 12 (2003) 2057-2062
-
(2003)
Protein Sci.
, vol.12
, pp. 2057-2062
-
-
Ivankov, D.N.1
Garbuzynskiy, S.O.2
Alm, E.3
Plaxco, K.W.4
Baker, D.5
Finkelstein, A.V.6
-
37
-
-
35648931551
-
On the role of structural class of a protein with two-state folding kinetics in determining correlations between its size, topology, and folding rate
-
Istomin A.Y., Jacobs D.J., and Livesay D.R. On the role of structural class of a protein with two-state folding kinetics in determining correlations between its size, topology, and folding rate. Protein Sci. 16 (2007) 2564-2569
-
(2007)
Protein Sci.
, vol.16
, pp. 2564-2569
-
-
Istomin, A.Y.1
Jacobs, D.J.2
Livesay, D.R.3
-
38
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
Mayor U., Guydosh N.R., Johnson C.M., Grossmann J.G., Sato S., Jas G.S., et al. The complete folding pathway of a protein from nanoseconds to microseconds. Nature 421 (2003) 863-867
-
(2003)
Nature
, vol.421
, pp. 863-867
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
Grossmann, J.G.4
Sato, S.5
Jas, G.S.6
-
39
-
-
33644876020
-
Pfam: clans, web tools and services
-
Finn R.D., Mistry J., Schuster-Bockler B., Griffiths-Jones S., Hollich V., Lassmann T., et al. Pfam: clans, web tools and services. Nucleic Acids Res. 34 (2006) D247-D251
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
-
40
-
-
0032474460
-
Folding of circular and permuted chymotrypsin inhibitor 2: retention of the folding nucleus
-
Otzen D.E., and Fersht A.R. Folding of circular and permuted chymotrypsin inhibitor 2: retention of the folding nucleus. Biochemistry 37 (1998) 8139-8146
-
(1998)
Biochemistry
, vol.37
, pp. 8139-8146
-
-
Otzen, D.E.1
Fersht, A.R.2
-
41
-
-
0035936689
-
Circularization changes the folding transition state of the src SH3 domain
-
Grantcharova V.P., and Baker D. Circularization changes the folding transition state of the src SH3 domain. J. Mol. Biol. 306 (2001) 555-563
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 555-563
-
-
Grantcharova, V.P.1
Baker, D.2
-
42
-
-
0036829967
-
Complete change of the protein folding transition state upon circular permutation
-
Lindberg M., Tangrot J., and Oliveberg M. Complete change of the protein folding transition state upon circular permutation. Nature Struct. Biol. 9 (2002) 818-822
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 818-822
-
-
Lindberg, M.1
Tangrot, J.2
Oliveberg, M.3
-
44
-
-
0030593468
-
Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels
-
Miroux B., and Walker J.E. Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J. Mol. Biol. 260 (1996) 289-298
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 289-298
-
-
Miroux, B.1
Walker, J.E.2
-
45
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
Gill S.C., and von Hippel P.H. Calculation of protein extinction coefficients from amino acid sequence data. Anal. Biochem. 182 (1989) 319-326
-
(1989)
Anal. Biochem.
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
von Hippel, P.H.2
|