-
1
-
-
50649125304
-
Structure and mechanics of membrane proteins
-
Engel A and Gaub H E 2008 Structure and mechanics of membrane proteins Annu. Rev. Biochem. 77 127-48
-
(2008)
Annu. Rev. Biochem.
, vol.77
, Issue.1
, pp. 127-148
-
-
Engel, A.1
Gaub, H.E.2
-
2
-
-
34347259478
-
Deciphering molecular interactions of native membrane proteins by single-molecule force spectroscopy
-
Kedrov A, Janovjak H, Sapra K T and Mueller D J 2007 Deciphering molecular interactions of native membrane proteins by single-molecule force spectroscopy Annu. Rev. Biophys. Biomol. Struct. 36 233-60
-
(2007)
Annu. Rev. Biophys. Biomol. Struct.
, vol.36
, Issue.1
, pp. 233-260
-
-
Kedrov, A.1
Janovjak, H.2
Sapra, K.T.3
Mueller, D.J.4
-
3
-
-
43649083578
-
From valleys to ridges: Exploring the dynamic energy landscape of single membrane proteins
-
Janovjak H, Sapra K T, Kedrov A and Mueller D J 2008 From valleys to ridges: exploring the dynamic energy landscape of single membrane proteins ChemPhysChem 9 954-66
-
(2008)
ChemPhysChem
, vol.9
, Issue.7
, pp. 954-966
-
-
Janovjak, H.1
Sapra, K.T.2
Kedrov, A.3
Mueller, D.J.4
-
4
-
-
29144532994
-
Characterizing molecular interactions in different bacteriorhodopsin assemblies by single-molecule force spectroscopy
-
Sapra K T, Besir H, Oesterhelt D and Mueller D J 2006 Characterizing molecular interactions in different bacteriorhodopsin assemblies by single-molecule force spectroscopy J. Mol. Biol. 355 640-50
-
(2006)
J. Mol. Biol.
, vol.355
, Issue.4
, pp. 640-650
-
-
Sapra, K.T.1
Besir, H.2
Oesterhelt, D.3
Mueller, D.J.4
-
5
-
-
3242796697
-
Controlled unfolding and refolding of a single sodium-proton antiporter using atomic force microscopy
-
Kedrov A, Ziegler C, Janovjak H, Kuehlbrandt W and Mueller D J 2004 Controlled unfolding and refolding of a single sodium-proton antiporter using atomic force microscopy J. Mol. Biol. 340 1143-52
-
(2004)
J. Mol. Biol.
, vol.340
, Issue.5
, pp. 1143-1152
-
-
Kedrov, A.1
Ziegler, C.2
Janovjak, H.3
Kuehlbrandt, W.4
Mueller, D.J.5
-
6
-
-
0141753133
-
Unfolding pathways of native bacteriorhodopsin depend on temperature
-
Janovjak H, Kessler M, Oesterhelt D, Gaub H and Mueller D J 2003 Unfolding pathways of native bacteriorhodopsin depend on temperature EMBO J. 22 5220-9
-
(2003)
EMBO J.
, vol.22
, Issue.19
, pp. 5220-5229
-
-
Janovjak, H.1
Kessler, M.2
Oesterhelt, D.3
Gaub, H.4
Mueller, D.J.5
-
7
-
-
33746606443
-
Single-molecule studies of membrane proteins
-
Mueller D J, Sapra K T, Scheuring S, Kedrov A, Frederix P L T M, Fotiadis D and Engel A 2006 Single-molecule studies of membrane proteins Curr. Opin. Struct. Biol. 16 489-95
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, Issue.4
, pp. 489-495
-
-
Mueller, D.J.1
Sapra, K.T.2
Scheuring, S.3
Kedrov, A.4
Frederix, P.L.T.M.5
Fotiadis, D.6
Engel, A.7
-
8
-
-
18444364820
-
Automated alignment and pattern recognition of single-molecule force spectroscopy data
-
Kuhn M, Janovjak H, Hubain M and Mueller D J 2005 Automated alignment and pattern recognition of single-molecule force spectroscopy data J. Microsc. 218 125-32
-
(2005)
J. Microsc.
, vol.218
, Issue.2
, pp. 125-132
-
-
Kuhn, M.1
Janovjak, H.2
Hubain, M.3
Mueller, D.J.4
-
9
-
-
33846693208
-
A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy
-
Marsico A, Labudde D, Sapra T, Mueller D J and Schroeder M 2007 A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy Bioinformatics 23 231-6
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 231-236
-
-
Marsico, A.1
Labudde, D.2
Sapra, T.3
Mueller, D.J.4
Schroeder, M.5
-
10
-
-
34548211887
-
Detecting molecular fingerprints in single molecule force spectroscopy using pattern recognition
-
Dietz H and Rief M 2007 Detecting molecular fingerprints in single molecule force spectroscopy using pattern recognition Jap. J. Appl. Phys. 46 5540-2
-
(2007)
Jap. J. Appl. Phys.
, vol.46
, pp. 5540-5542
-
-
Dietz, H.1
Rief, M.2
-
11
-
-
0030768310
-
Surface of bacteriorhodopsin revealed by high-resolution electron crystallography
-
Kimura Y, Vassylyev D G, Miyazawa A, Kidera A, Matsushima M, Mitsuoka K, Murata K, Hirai T and Fujiyoshi Y 1997 Surface of bacteriorhodopsin revealed by high-resolution electron crystallography Nature 389 206-11
-
(1997)
Nature
, vol.389
, Issue.6647
, pp. 206-211
-
-
Kimura, Y.1
Vassylyev, D.G.2
Miyazawa, A.3
Kidera, A.4
Matsushima, M.5
Mitsuoka, K.6
Murata, K.7
Hirai, T.8
Fujiyoshi, Y.9
-
12
-
-
0032578378
-
Lipid patches in membrane protein oligomers: Crystal structure of the bacteriorhodopsin-lipid complex
-
Essen L-O, Siegert R, Lehmann W D and Oesterhelt D 1998 Lipid patches in membrane protein oligomers: crystal structure of the bacteriorhodopsin-lipid complex Proc. Natl Acad. Sci. USA 95 11673-8
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, Issue.20
, pp. 11673-11678
-
-
Essen, L.-O.1
Siegert, R.2
Lehmann, W.D.3
Oesterhelt, D.4
-
13
-
-
0034616309
-
Unfolding pathways of individual bacteriorhodopsins
-
Oesterhelt F, Oesterhelt D, Pfeiffer M, Engel A, Gaub H E and Mueller D J 2000 Unfolding pathways of individual bacteriorhodopsins Science 288 143-6
-
(2000)
Science
, vol.288
, Issue.5463
, pp. 143-146
-
-
Oesterhelt, F.1
Oesterhelt, D.2
Pfeiffer, M.3
Engel, A.4
Gaub, H.E.5
Mueller, D.J.6
-
14
-
-
0036932510
-
Stability of bacteriorhodopsin alpha-helices and loops analyzed by single-molecule force spectroscopy
-
Mueller D J, Kessler M, Oesterhelt F, Moeller C, Oesterhelt D and Gaub H E 2002 Stability of bacteriorhodopsin alpha-helices and loops analyzed by single-molecule force spectroscopy Biophys. J. 83 3578-88
-
(2002)
Biophys. J.
, vol.83
, Issue.6
, pp. 3578-3588
-
-
Mueller, D.J.1
Kessler, M.2
Oesterhelt, F.3
Moeller, C.4
Oesterhelt, D.5
Gaub, H.E.6
-
15
-
-
2342646040
-
Probing the energy landscape of the membrane protein bacteriorhodopsin
-
Janovjak H, Struckmeier J, Hubain M, Kedrov A, Kessler M and Mueller D J 2004 Probing the energy landscape of the membrane protein bacteriorhodopsin Structure 12 871-9
-
(2004)
Structure
, vol.12
, Issue.5
, pp. 871-879
-
-
Janovjak, H.1
Struckmeier, J.2
Hubain, M.3
Kedrov, A.4
Kessler, M.5
Mueller, D.J.6
-
16
-
-
9444285788
-
Escherichia coli acid resistance: Tales of an amateur acidophile
-
Foster J W 2004 Escherichia coli acid resistance: tales of an amateur acidophile Nat. Rev. Microbiol. 2 898-907
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, Issue.11
, pp. 898-907
-
-
Foster, J.W.1
-
17
-
-
0033886562
-
The amino acid/polyamine/organocation (APC) superfamily of transporters specific for amino acids, polyamines and organocations
-
Jack D L, Paulsen I T and Saier M H 2000 The amino acid/polyamine/ organocation (APC) superfamily of transporters specific for amino acids, polyamines and organocations Microbiology 146 1797-814
-
(2000)
Microbiology
, vol.146
, pp. 1797-1814
-
-
Jack, D.L.1
Paulsen, I.T.2
Saier, M.H.3
-
19
-
-
33846963817
-
A bacterial arginine-agmatine exchange transporter involved in extreme acid resistance
-
Fang Y, Kolmakova-Partensky L and Miller C 2007 A bacterial arginine-agmatine exchange transporter involved in extreme acid resistance J. Biol. Chem. 282 176-82
-
(2007)
J. Biol. Chem.
, vol.282
, Issue.1
, pp. 176-182
-
-
Fang, Y.1
Kolmakova-Partensky, L.2
Miller, C.3
-
20
-
-
34250376457
-
Functional and structural characterization of the first prokaryotic member of the L-amino acid transporter (LAT) family: A model for APC transporters
-
Reig N et al 2007 Functional and structural characterization of the first prokaryotic member of the L-amino acid transporter (LAT) family: a model for APC transporters J. Biol. Chem. 282 13270-81
-
(2007)
J. Biol. Chem.
, vol.282
, Issue.18
, pp. 13270-13281
-
-
Reig, N.1
Al, E.2
-
21
-
-
8144221884
-
Purification and properties of the Escherichia coli nucleoside transporter NupG, a paradigm for a major facilitator transporter sub-family
-
Xie H et al 2004 Purification and properties of the Escherichia coli nucleoside transporter NupG, a paradigm for a major facilitator transporter sub-family Mol. Membr. Biol. 21 323-36
-
(2004)
Mol. Membr. Biol.
, vol.21
, Issue.5
, pp. 323-336
-
-
Xie, H.1
Al, E.2
-
22
-
-
34347209835
-
Calculation of thermal noise in atomic force microscopy
-
Butt H-J and Jaschke M 1995 Calculation of thermal noise in atomic force microscopy Nanotechnology 6 1-7
-
(1995)
Nanotechnology
, vol.6
, Issue.1
, pp. 1-7
-
-
Butt, H.-J.1
Jaschke, M.2
-
23
-
-
38449087324
-
Atomic force microscopy and spectroscopy of native membrane proteins
-
Engel A and Mueller D J 2007 Atomic force microscopy and spectroscopy of native membrane proteins Nat. Protoc. 2 2191-7
-
(2007)
Nat. Protoc.
, vol.2
, Issue.9
, pp. 2191-2197
-
-
Engel, A.1
Mueller, D.J.2
-
24
-
-
0036005859
-
Imaging and manipulation of biological structures with the AFM
-
Fotiadis D, Scheuring S, Mueller S A, Engel A and Mueller D J 2002 Imaging and manipulation of biological structures with the AFM Micron 33 385-97
-
(2002)
Micron
, vol.33
, Issue.4
, pp. 385-397
-
-
Fotiadis, D.1
Scheuring, S.2
Mueller, S.A.3
Engel, A.4
Mueller, D.J.5
-
26
-
-
0031011695
-
Reversible unfolding of individual titin immunoglobulin domains by AFM
-
Rief M, Gautel M, Oesterhelt F, Fernandez J M and Gaub H E 1997 Reversible unfolding of individual titin immunoglobulin domains by AFM Science 276 1109-12
-
(1997)
Science
, vol.276
, Issue.5315
, pp. 1109-1112
-
-
Rief, M.1
Gautel, M.2
Oesterhelt, F.3
Fernandez, J.M.4
Gaub, H.E.5
-
27
-
-
0038779383
-
Determining molecular forces that stabilize human aquaporin-1
-
Moeller C, Fotiadis D, Suda K, Engel A, Kessler M and Mueller D J 2003 Determining molecular forces that stabilize human aquaporin-1 J. Struct. Biol. 142 369-78
-
(2003)
J. Struct. Biol.
, vol.142
, Issue.3
, pp. 369-378
-
-
Moeller, C.1
Fotiadis, D.2
Suda, K.3
Engel, A.4
Kessler, M.5
Mueller, D.J.6
-
28
-
-
13844298943
-
Probing origins of molecular interactions stabilizing the membrane proteins halorhodopsin and bacteriorhodopsin
-
Cisneros D A, Oesterhelt D and Mueller D J 2005 Probing origins of molecular interactions stabilizing the membrane proteins halorhodopsin and bacteriorhodopsin Structure 13 235-42
-
(2005)
Structure
, vol.13
, Issue.2
, pp. 235-242
-
-
Cisneros, D.A.1
Oesterhelt, D.2
Mueller, D.J.3
-
29
-
-
38049055850
-
Folding and assembly of proteorhodopsin
-
Klyszejko A L, Shastri S, Mari S A, Grubmueller H, Mueller D J and Glaubitz C 2008 Folding and assembly of proteorhodopsin J. Mol. Biol. 376 35-41
-
(2008)
J. Mol. Biol.
, vol.376
, Issue.1
, pp. 35-41
-
-
Klyszejko, A.L.1
Shastri, S.2
Mari, S.A.3
Grubmueller, H.4
Mueller, D.J.5
Glaubitz, C.6
-
30
-
-
0026657705
-
Measuring local surface charge densities in electrolyte solutions with a scanning force microscope
-
Butt H-J 1992 Measuring local surface charge densities in electrolyte solutions with a scanning force microscope Biophys. J. 63 578-82
-
(1992)
Biophys. J.
, vol.63
, Issue.2
, pp. 578-582
-
-
Butt, H.-J.1
-
31
-
-
34447642312
-
Detecting molecular interactions that stabilize, activate and guide ligand-binding of the sodium/proton antiporter MjNhaP1 from Methanococcus jannaschii
-
Kedrov A, Wegmann S, Smits S H J, Goswami P, Baumann H and Mueller D J 2007 Detecting molecular interactions that stabilize, activate and guide ligand-binding of the sodium/proton antiporter MjNhaP1 from Methanococcus jannaschii J. Struct. Biol. 159 290-301
-
(2007)
J. Struct. Biol.
, vol.159
, Issue.2
, pp. 290-301
-
-
Kedrov, A.1
Wegmann, S.2
Smits, S.H.J.3
Goswami, P.4
Baumann, H.5
Mueller, D.J.6
-
32
-
-
0027522050
-
Characterization of the third member of the MCAT family of cationic amino acid transporters. Identification of a domain that determines the transport properties of the MCAT proteins
-
Closs E I, Lyons C R, Kelly C and Cunningham J M 1993 Characterization of the third member of the MCAT family of cationic amino acid transporters. Identification of a domain that determines the transport properties of the MCAT proteins J. Biol. Chem. 268 20796-800
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 20796-20800
-
-
Closs, E.I.1
Lyons, C.R.2
Kelly, C.3
Cunningham, J.M.4
-
33
-
-
0032533163
-
Membrane topology of the Escherichia coli gamma-aminobutyrate transporter: Implications on the topography and mechanism of prokaryotic and eukaryotic transporters from the APC superfamily
-
Hu L A and King S C 1998 Membrane topology of the Escherichia coli gamma-aminobutyrate transporter: implications on the topography and mechanism of prokaryotic and eukaryotic transporters from the APC superfamily Biochem. J. 336 69-76
-
(1998)
Biochem. J.
, vol.336
, pp. 69-76
-
-
Hu, L.A.1
King, S.C.2
-
34
-
-
0346843111
-
Induction of substrate specificity shifts by placement of alanine insertions within the consensus amphipathic region of the Escherichia coli GABA (gamma-aminobutyric acid) transporter encoded by gabP
-
King S C, Hu L A and Pugh A 2003 Induction of substrate specificity shifts by placement of alanine insertions within the consensus amphipathic region of the Escherichia coli GABA (gamma-aminobutyric acid) transporter encoded by gabP Biochem. J. 376 645-53
-
(2003)
Biochem. J.
, vol.376
, Issue.3
, pp. 645-653
-
-
King, S.C.1
Hu, L.A.2
Pugh, A.3
-
35
-
-
0344845286
-
Mutational analysis of the large periplasmic loop 7-8 of the putrescine transporter PotE in Escherichia coli
-
Minchin R F and McCoubrie J E 2004 Mutational analysis of the large periplasmic loop 7-8 of the putrescine transporter PotE in Escherichia coli Int. J. Biochem. Cell. Biol. 36 271-80
-
(2004)
Int. J. Biochem. Cell. Biol.
, vol.36
, Issue.2
, pp. 271-280
-
-
Minchin, R.F.1
McCoubrie, J.E.2
-
36
-
-
33644844356
-
Unfolding barriers in bacteriorhodopsin probed from the cytoplasmic and the extracellular side by AFM
-
Kessler M and Gaub H E 2006 Unfolding barriers in bacteriorhodopsin probed from the cytoplasmic and the extracellular side by AFM Structure 14 521-7
-
(2006)
Structure
, vol.14
, Issue.3
, pp. 521-527
-
-
Kessler, M.1
Gaub, H.E.2
-
37
-
-
0242657348
-
Membrane protein folding: Beyond the two stage model
-
Engelman D M et al 2003 Membrane protein folding: beyond the two stage model FEBS Lett. 555 122-5
-
(2003)
FEBS Lett.
, vol.555
, Issue.1
, pp. 122-125
-
-
Engelman, D.M.1
Al, E.2
-
38
-
-
0041353145
-
Structure and mechanism of the lactose permease of Escherichia coli
-
Abramson J, Smirnova I, Kasho V, Verner G, Kaback H R and Iwata S 2003 Structure and mechanism of the lactose permease of Escherichia coli Science 301 610-5
-
(2003)
Science
, vol.301
, Issue.5633
, pp. 610-615
-
-
Abramson, J.1
Smirnova, I.2
Kasho, V.3
Verner, G.4
Kaback, H.R.5
Iwata, S.6
-
39
-
-
0034680862
-
Identification of the putrescine recognition site on polyamine transport protein PotE
-
Kashiwagi K, Kuraishi A, Tomitori H, Igarashi A, Nishimura K, Shirahata A and Igarashi K 2000 Identification of the putrescine recognition site on polyamine transport protein PotE J. Biol. Chem. 275 36007-12
-
(2000)
J. Biol. Chem.
, vol.275
, Issue.46
, pp. 36007-36012
-
-
Kashiwagi, K.1
Kuraishi, A.2
Tomitori, H.3
Igarashi, A.4
Nishimura, K.5
Shirahata, A.6
Igarashi, K.7
-
40
-
-
33749376764
-
Identification of the cadaverine recognition site on the cadaverine-lysine antiporter CadB
-
Soksawatmaekhin W, Uemura T, Fukiwake N, Kashiwagi K and Igarashi K 2006 Identification of the cadaverine recognition site on the cadaverine-lysine antiporter CadB J. Biol. Chem. 281 29213-20
-
(2006)
J. Biol. Chem.
, vol.281
, Issue.39
, pp. 29213-29220
-
-
Soksawatmaekhin, W.1
Uemura, T.2
Fukiwake, N.3
Kashiwagi, K.4
Igarashi, K.5
-
41
-
-
1642524280
-
Thiol modification of cysteine 327 in the eighth transmembrane domain of the light subunit xCT of the heteromeric cystine/glutamate antiporter suggests close proximity to the substrate binding site/permeation pathway
-
Jimenez-Vidal M, Gasol E, Zorzano A, Nunes V, Palacin M and Chillaron J 2004 Thiol modification of cysteine 327 in the eighth transmembrane domain of the light subunit xCT of the heteromeric cystine/glutamate antiporter suggests close proximity to the substrate binding site/permeation pathway J. Biol. Chem. 279 11214-21
-
(2004)
J. Biol. Chem.
, vol.279
, Issue.12
, pp. 11214-11221
-
-
Jimenez-Vidal, M.1
Gasol, E.2
Zorzano, A.3
Nunes, V.4
Palacin, M.5
Chillaron, J.6
-
42
-
-
37549016432
-
Examining the dynamic energy landscape of an antiporter upon inhibitor-binding
-
Kedrov A, Appel M, Baumann H, Ziegler C and Mueller D J 2008 Examining the dynamic energy landscape of an antiporter upon inhibitor-binding J. Mol. Biol. 375 1258-66
-
(2008)
J. Mol. Biol.
, vol.375
, Issue.5
, pp. 1258-1266
-
-
Kedrov, A.1
Appel, M.2
Baumann, H.3
Ziegler, C.4
Mueller, D.J.5
-
43
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh A, Larsson B, von Heijne G and Sonnhammer E L L 2001 Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes J. Mol. Biol. 305 567-80
-
(2001)
J. Mol. Biol.
, vol.305
, Issue.3
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.L.4
|