Chemical stability and reactivity of deprotonated oligonucleotides (DNA) in the gas phase: Protonation and solvation with hydrogen bromide

Journal of Physical Chemistry B

Volumn 112, Issue 33, 2008, Pages 10375-10381

  Feil, Stefan W ^a   Koyanagi, Greg K ^a   Anichina, Janna ^a   Bohme, Diethard K ^a  

^a YORK UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL REACTIVITY; CHEMICAL STABILITY; ELECTROSPRAY IONIZATION; GAS DYNAMICS; HELIUM; HYDROGEN; INERT GASES; NUCLEIC ACIDS; OLIGONUCLEOTIDES; ORGANIC ACIDS; PHASE STABILITY;

ELECTRO SPRAYING; GAS-PHASE; HYDROGEN BROMIDE; NEUTRAL MOLECULES;

GASES;

EID: 51049121812     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp804193u     Document Type: Article

References (48)

1. Yamashita, M.; Fenn, J. B. J. Phys. Chem. 1984, 88, 4671.
2. Wu, J.; McLuckey, S. A. Int. J. Mass Spectrom. 2004, 237, 197.
3. Levin, B. C. Toxicology 1996, 115, 89.
4. He, M.; McLuckey, S. A. Anal. Chem. 2004, 76, 4189.
5. Gidden, J.; Baker, E. S.; Ferzoco, A.; Bowers, M. T. Int. J. Mass Spectrom. 2005, 240, 183.
6. Baker, E. S.; Bernstein, S. L.; Gabelica, V.; De Paw, E.; Bowers, M. T. Int. J. Mass Spectrom. 2006, 253, 225.
7. Giovangelle, C.; Sun, J. S.; Helene, C. In Comprehensive Supramolecular Chemistry; Pergamon Press: Oxford, 1996; Vol. 4, p 177.
8. Berman, H. M.; Schneider, B. In Oxford Handbook of Nucleic Acid Structure; Oxford Science Publications: Oxford, 1999; p 2950.
9. Johnson, D. S.; Boger, D. L. In Comprehensive Supramolecular Chemistry; Pergamon Press: Oxford, 1996; Vol. 4, p 73.
10. Gale, D. C.; Smith, R. D. J. Am. Soc. Mass Spectrom. 1995, 6, 1154.
11. Triolo, A.; Arcamone, F. M.; Raffaelli, A.; Salvadoøi, P. J. Mass Spectrom. 1997, 32, 1186.
12. Kapur, A.; Beck, J. L.; Sheil, M. M. Rapid Commun. Mass Spectrom. 1999, 13, 2489.
13. Greig, M. L.; Robinson, J. M. J. Biomol. Screen. 2000, 5, 441.
14. Wan, K. X.; Shibue, T.; Gross, M. L. J. Am. Chem. Soc. 2000, 122, 300.
15. Gabelica, V.; Rosu, F,.; Houssier, C.; De Pauw, E. Rapid Commun. Mass Spectrom. 2000, 14, 464.
16. Iannitti-Tito, P.; Weimann, A.; Wickham, G.; Sheil, M. M. Analyst 2000, 125, 627.
17. Gupta, R.; Kapur, A.; Beck, J. L.; Sheil, M. M. Rapid Commun. Mass Spectrom. 2001, 15, 2472.
18. Rosu, F.; Gabelica, V.; Houssier, C.; De Pauw, E. Nucleic Acids Res. 2002, 30, e82.
19. Carrasco, C.; Rosu, F.; Gabelica, V.; Houssier, C.; De Pauw, E.; Garbay-Jaureguiberry, C.; Roques, B.; Wilson, W. D.; Chaires, J. B.; Waring, M. J.; Bailly, C. Chem. Biochem. 2002, 3, 1241.
20. Colgrave, M. L.; Beck, J. L.; Sheil, M. M.; Searle, M. S. Chem. Commun. 2002, 6, 556.
21. Guittat, L.; Alberti, P.; Rosu, F.; Van Miert, S.; Thetiot, E.; Pieters, L.; Gabelica, V.; De Pauw, E.; Ottaviani, A.; Riou, J. F.; Mergny, J. L. Biochimie 2005, 85, 547.
22. Gabelica, V.; Galic, N.; Rosu, F.; Houssier, C.; De Pauw, E. J. Mass Spectrom. 2003, 38, 491.
23. Colgrave, M. L.; Iannitti-Tito, P.; Wickham, G.; Sheil, M. M. Aust. J. Chem. 2003, 56, 401.
24. Rosu, F.; De Pauw, E.; Guittat, L.; Alberti, P.; Lacroix, L.; Mailliet, P.; Riou, J. F.; Mergny, J. L. Biochemistry 2003, 42, 10361.
25. Beck, J. L.; Gupta, R.; Urathamakul, T.; Williamson, N. L.; Sheil, M. M.; Aldrich-Wright, J. R.; Ralph, S, F. Chem. Commun. 2003, 5, 626.
26. Gabelica, V.; De Pauw, E. J. Am. Soc. Mass Spectrom. 2001, 13, 91.
27. Gabelica, V.; De Pauw, E.; Rosu, F. J. Mass Spectrom. 1999, 34, 1328.
28. Wan, K. X.; Gross, M. L.; Shibue, T. J. Am. Soc. Mass Spectrom. 2000, 11, 450.
29. Rosu, F.; Pirotte, S.; De Pauw, E.; Gabelica, V. Int. J. Mass Spectrom. 2006, 253, 156.
30. Reyzer, M. L.; Brodbelt, J, S.; Kerwin, S. M.; Kumar, D. Nucleic Acids Res. 2001, 29, e103.
31. David, W.; Kerwin, S. M.; Kern, J.; Brodbelt, J. M. Anal. Chem. 2000, 74, 2029.
32. Oehlers, L.; Mazzitelli, C.; Rodriguez, M.; Brodbelt, J. S.; Kerwin, S. J. Am. Soc. Mass Spectrom. 2004, 15, 1593.
33. Keller, K. M.; Zhang, J.; Breeden, M. M.; Ellington, A. D.; Brodbelt, J. S. J. Mass Spectrom. 2005, 40, 1362.
34. Keller, K. M.; Zhang, J.; Oehlers, L.; Brodbelt, J. S. J. Mass Spectrom. 2005, 49, 1327.
35. Mazzitelli, C. L.; Kern, J. T.; Rodriguez, M.; Brodbelt, J. S.; Kerwin, S. J. Am. Soc. Mass Spectrom. 2006, 17, 593.
36. Shi, X.; Takamizawa, A.; Nishimura, Y.; Hiraoka, K.; Akashi, S. J. Mass Spectrom. 2006, 41, 1086.
37. Hofstadler, S. A.; Sannes-Lowery, K. A. Nat. Rev. Drug Discovery 2006, 5, 585.
38. Koyanagi, G. K.; Baranov, V. I.; Tanner, S. D.; Anichina, J.; Jarvis, M. J. Y.; Feil, S.; Böhme, D. K. Int. J. Mass Spectrom. 2007, 265, 295-301.
39. Mackay, G. I.; Vlachos, G. D.; Böhme, D. K.; Schiff, H. I. Int. J. Mass Spectrom. Ion Phys. 1980, 36, 259-270.
40. Raksit, A. B.; Bohme, D. K. Int. J. Mass Spectrom. Ion Processes 1983/84, 55, 69-82.
41. Morris, R. A.; Knighton, W. B.; Viggiano, A. A.; Hoffma, B. C.; Schaeffer, H. F., III J. Chem. Phys. 1997, 106, 3545-3547.
42. NIST Standard Reference Database. Number 69, June 2005 Release. NegativeIonEnergeticsDataCompiledbyJ.E.Bartmess.http://webbook.nist.gov/ chemistry
43. Su, T.; Chesnavich, W. J. J. Chem. Phys. 1982, 76, 5183-5185.
44. Hirschfelder, J.; Curtis, C. F.; Bird, R. B. Molecular Theory of Gases and Liquids; Wiley: New York, 1954; p 950.
45. Nelson, R. D.; Lide, D. R.; Maryon, A. A. Natl. Stand. Ref. Data Ser. (U. S., Natl. Bur. Stand.) 1967, 10.
46. Pan, S.; Verhoeven, K.; Lee, J. K. J. Am. Soc. Mass Spectrom. 2005, 16, 1853.
47. Green-Church, K. B.; Limbach, P. A. J. Am. Soc. Mass Spectrom. 2000, 11, 24.
48. Stephenson, J. L.; McLuckey, S. A. Anal. Chem. 1997, 69, 281.