Purification, characterization, and substrate specificity of two 2,3-dihydroxybiphenyl 1,2-dioxygenase from Rhodococcus sp. R04, showing their distinct stability at various temperature

Biochimie

Volumn 90, Issue 10, 2008, Pages 1530-1538

  Yang, Xiuqing ^a,b   Xie, Fuhong ^b   Zhang, Guoqing ^b   Shi, Yawei ^a   Qian, Shijun ^b  

^a SHANXI UNIVERSITY   (China)

^b INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

2,3 Dihydroxybiphenyl 1,2 dioxygenase; PCB degradation; Rhodococcus sp. R04; Substrate specificity

Indexed keywords

2,3 DIHYDROXYBIPHENYL 1,2 DIOXYGENASE; DIOXYGENASE; POLYCHLORINATED BIPHENYL; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; ENZYME MECHANISM; ENZYME SPECIFICITY; ENZYME STABILITY; MICROBIAL DEGRADATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; RHODOCOCCUS; SEQUENCE ALIGNMENT; THERMOSTABILITY;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; CONSERVED SEQUENCE; DIOXYGENASES; ENZYME STABILITY; GENE EXPRESSION REGULATION, BACTERIAL; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OXYGENASES; PLASMIDS; RECOMBINANT PROTEINS; RHODOCOCCUS; SEQUENCE HOMOLOGY, AMINO ACID; TEMPERATURE;

RHODOCOCCUS SP.;

EID: 50949090117     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2008.05.020     Document Type: Article

References (31)

1. Ahmed M., and Focht D.D. Degradation of polychlorinated biphenyls by two species of Achromobacter. Can. J. Microbiol. 19 (1973) 47-52
2. Furukawa K., and Matsumura F. Microbial metabolism of polychlorinated biphenyls. Studies on the relative degradability of polychlorinated biphenyl components by Alcaligenes sp. J. Agric. Food Chem. 42 (1976) 543-548
3. Furukawa K., and Chakrabarty A.M. Involvement of plasmids in total degradation of chlorinated biphenyls. Appl. Environ. Microbiol. 44 (1982) 619-626
4. Abramowicz D.A. Aerobic and anaerobic biodegradation of PCBs: a review. Crit. Rev. Biotechnol. 10 (1990) 241-251
5. Boyle A.W., Silvin C.J., Hassett J.P., Nakas J.P., and Tanenbaum S.W. Bacterial PCB biodegradation. Biodegradation 3 (1992) 285-298
6. Seeger M., Timmis K.N., and Hofer B. Degradation of chlorobiphenyls catalyzed by the bph-encoded biphenyl-2,3-dioxygenase and biphenyl-2,3-dihydrodiol-2,3-dehydrogenase of Pseudomonas sp. LB400. FEMS Microbiol. Lett. 133 (1995) 259-264
7. Arensdorf J.J., and Focht D.D. Formation of chlorocatechol meta cleavage products by a pseudomonad during metabolism of monochlorobiphenyls. Appl. Environ. Microbiol. 60 (1994) 2884-2889
8. Asturias J.A., and Timmis K.N. Three different 2,3-dihydroxybiphenyl-1,2-dioxygenase genes in the gram-positive polychlorobiphenyl-degrading bacterium Rhodococcus globerulus P6. J. Bacteriol 175 (1993) 4631-4640
9. Vaillancourt F.H., Labbe G., Drouin N.M., Fortin P.D., and Eltis L.D. The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates. J. Biol. Chem. 277 (2002) 2019-2027
10. Agro C., Bang K., Pedersen H., Bruun P., Karlson U., and Boldt T.S. Risk Assessment of Genetically Modified Derivatives of Pseudomonas fluorescens F113 for Use in Bioremediation of PCB Contaminated Soil (2000), The National Forest and Nature Agency, Copenhagen
11. Seto M., Ida M., Okita N., Hatta T., Masai E., and Fukuda M. Catabolic potential of multiple PCB transformation systems in Rhodococcus sp. strain RHA1. Biotechnol. Lett. 18 (1996) 1305-1308
12. Van der Geize R., Yam K., Heuser T., Wilbrink M.H., Hara H., Anderton M.C., Sim E., Dijkhuizen L., Davies J.E., Mohn W.W., and Eltis L.D. A gene cluster encoding cholesterol catabolism in a soil actinomycete provides insight into Mycobacterium tuberculosis survival in macrophages. PNAS 104 (2007) 1947-1952
13. Maeda M., Chung S.Y., Song E., and Kudo T. Multiple genes encoding 2,3-dihydroxybiphenyl 1,2-dioxygenase in the gram-positive polychlorinated biphenyl-degrading bacterium Rhodococcus erythropolis TA421, isolated from a termite ecosystem. Appl. Environ. Microbiol. 61 (1995) 549-555
14. Yang X.Q., Sun Y., and Qian S.J. Biodegradation of seven polychlorinated biphenyls by a new isolated aerobic bacterial (Rhodococcus sp. R04). J. Ind. Microbiol. Biotechnol. 31 (2004) 415-420
15. Li Y., Li M., Xing G.C., and Hu Z.Y. Stimulation of the mitogen-activated protein kinase cascade and tyrosine phosphorylation of the epidermal growth factor receptor by hepatopoietin. J. Biol. Chem. 275 (2000) 37443-37447
16. Eltis D.L., Hofmann B., Hecht H.J., Lünsdorf H., and Timmis K.N. Purification and crystallization of 2,3-dihydroxybiphenyl 1,2-dioxygenase. J. Biol. Chem. 268 (1993) 2727-2732
17. Van der Geize R., and Hessels G.I. R. van Gerwen, P. van der Meijden, Unmarked gene deletion mutagenesis of kstD, encoding 3-ketosteroid Δ1-dehydrogenase, in Rhodococcus erythropolis SQ1 using sacB as counter-selectable marker. FEMS Microbiol Lett 205 (2001) 197-202
18. Heiss G., Stolz A., Kuhm A.E., Müller C., Klein J., Altenbuchner J., and Knackmuss H.J. Characterization of a 2,3-dihydroxybiphenyl dioxygenase from the naphthalene sulfonate-degrading bacterium strain BN6. J. Bacteriol. 177 (1995) 5865-5871
19. Asturias J.A., Eltis L.D., Prucha M., and Timmis K.N. Analysis of three 2,3-dihydroxybiphenyl 1,2-dioxygenases found in Rhodococcus globerulus P6. J. Biol. Chem. 269 (1994) 7807-7815
20. Higson F.K., and Focht D.D. Bacterial metabolism of hydroxylated biphenyls. Appl. Environ. Microbiol. 55 (1989) 946-952
21. Rost B., Yachdav G., and Liu J. The PredictProtein server. Nucleic Acids Res. 32 (2003) 321-326
22. Han S., Eltis L.D., Timmis K.N., Muchmore S.W., and Bolin J.T. Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad. Science 270 (1995) 976-980
23. Yang X.Q., Liu X.Q., Song L.Y., Xie F.H., and Qian S.J. Characterization and functional analysis of novel gene cluster involved in biphenyl degradation in Rhodococcus sp. strain R04. J. Appl. Microbiol. 103 (2007) 2214-2224
24. Taguchi K., Motoyama M., Iida T., and Kudo T. Polychlorinated biphenyl/biphenyl degrading gene clusters in Rhodococcus sp. K37, HA99, and TA431 are different from well-known bph gene clusters of Rhodococci. Biosci. Biotechnol. Biochem. 71 (2007) 1136-1144
25. Iwabuchi T., and Harayama S. Biochemical and molecular characterization of 1-hydroxy-2-naphthoate dioxygenase from Nocardioides sp. KP7. J. Biol. Chem. 273 (1998) 8332-8336
26. Sakai M., Masai E., Asami H., Sugiyama K., Kimbara K., and Fukuda M. Diversity of 2,3-dihydroxybiphenyl dioxygenase genes in a strong PCB degrader, Rhodococcus sp. strain RHA1. J. Biosci. Bioeng. 93 (2002) 421-427
27. McKay D.B., Prucha M., Reineke W., Timmis K.N., and Pieper D.H. Substrate specificity and expression of three 2,3-dihydroxybiphenyl 1,2-dioxygenases from Rhodococcus globerulus strain P6. J. Bacteriol. 185 (2003) 2944-2951
28. Ogasahara K., Khechinashvili N.N., Nakamura M., Yoshimoto T., and Yutani K. Thermal stability of pyrrolidone carboxyl peptidases from hyperthermophilic archaeon, Pyrococcus furiosus. Eur. J. Biochem. 268 (2001) 3233-3242
29. Hatta T., Mukerjee-Dhar G., Damborsky J., Kiyohara H., and Kimbara K. Characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a polychlorinated biphenyl- and naphthalene-degrading Bacillus sp. JF8. J. Biol. Chem. 278 (2003) 21483-21492
30. Khan A.A., Wang R.F., Nawaz M.S., Cao W.W., and Cerniglia C.E. Purification of 2,3-dihydroxybiphenyl 1,2-dioxygenase from Pseudomonas putida OU83 and characterization of the gene (bphC). Appl. Environ. Microbiol. 62 (1996) 1825-1830
31. Thomas T.M., and Scopes R.K. The effects of temperature on the kinetics and stability of mesophilic and thermophilic 3-phosphoglycerate kinases. Biochem. J. 330 (1998) 1087-1095