Transcription networks and cyclin/CDKs: The yin and yang of cell cycle oscillators

Cell Cycle

Volumn 7, Issue 17, 2008, Pages 2626-2629

  Simmons Kovacs, Laura A ^a   Orlando, David A ^a   Haase, Steven B ^a  

^a DUKE UNIVERSITY   (United States)

Author keywords

CDK; Cell cycle; Oscillator; Transcription factor; Transcription network

Indexed keywords

CYCLIN B; CYCLIN DEPENDENT KINASE; CYCLINE; TRANSCRIPTION FACTOR;

CELL BUDDING; CELL CYCLE; CELL CYCLE REGULATION; DNA REPLICATION; ENZYME ACTIVITY; GENE ACTIVATION; GENETIC TRANSCRIPTION; HUMAN; MITOSIS; NONHUMAN; OSCILLATOR; REVIEW;

SACCHAROMYCETALES;

ANIMALS; BIOLOGICAL CLOCKS; CELL CYCLE; CYCLIN-DEPENDENT KINASES; CYCLINS; GENE REGULATORY NETWORKS; HUMANS; YIN-YANG;

EID: 50849143812     PISSN: 15384101     EISSN: 15514005     Source Type: Journal    
DOI: 10.4161/cc.7.17.6515     Document Type: Review

References (34)

1. Orlando DA, Lin CY, Bernard A, Wang JY, Socolar JE, Iversen ES, Hartemink AJ, Haase SB. Global control of cell cycle transcription by coupled CDK and network oscillators. Nature 2008; 453:944-7.
2. 1 events in the budding yeast cell cycle. Nature 1999; 401:394-7.
3. Evans T, Rosenthal ET, Youngblom J, Distel D, Hunt T. Cyclin: a protein specified by maternal mRNA in sea urchin eggs that is destroyed at each cleavage division. Cell 1983; 33:389-96.
4. Masui Y, Markert CL. Cytoplasmic control of nuclear behavior during meiotic maturation of frog oocytes. J Exp Zool 1971; 177:129-45.
5. Newport JW, Kirschner MW. Regulation of the cell cycle during early Xenopus development. Cell 1984; 37:731-42.
6. Murray AW, Kirschner MW. Dominoes and clocks: the union of two views of the cell cycle. Science 1989; 246:614-21.
7. Murray AW. Recycling the cell cycle: cyclins revisited. Cell 2004; 116:221-34.
8. Murray AW. Cell biology: the cell cycle as a cdc2 cycle. Nature 1989; 342:14-5.
9. Hartwell LH, Culotti J, Pringle JR, Reid BJ. Genetic control of the cell division cycle in yeast. Science 1974; 183:46-51.
10. Nurse P, Thuriaux P, Nasmyth K. Genetic control of the cell division cycle in the fission yeast Schizosaccharomyces pombe. Mol Gen Genet 1976; 146:167-78.
11. Lew DJ, Reed SI. A proliferation of cyclins. Trends Cell Biol 1992; 2:77-81.
12. Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, Jennings EG, Zeitlinger J, Pokholok DK, Kellis M, Rolfe PA, Takusagawa KT, Lander ES, Gifford DK, Fraenkel E, Young RA. Transcriptional regulatory code of a eukaryotic genome. Nature 2004; 431:99-104.
13. Teixeira MC, Monteiro P, Jain P, Tenreiro S, Fernandes AR, Mira NP, Alenquer M, Freitas AT, Oliveira AL, Sa-Correia I. The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res 2006; 34:446-51.
14. Ahnert SE, Willbrand K, Brown FC, Fink TM. Unbiased pattern detection in microarray data series. Bioinformatics 2006; 22:1471-6.
15. de Lichtenberg U, Jensen LJ, Fausboll A, Jensen TS, Bork P, Brunak S. Comparison of computational methods for the identification of cell cycle-regulated genes. Bioinformatics 2005; 21:1164-71.
16. Johansson D, Lindgren P, Berglund A. A multivariate approach applied to microarray data for identification of genes with cell cycle-coupled transcription. Bioinformatics 2003; 19:467-73.
17. Pramila T, Wu W, Miles S, Noble WS, Breeden LL. The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle. Genes Dev 2006; 20:2266-78.
18. Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 1998; 9:3273-97.
19. Brady SM, Orlando DA, Lee JY, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U, Benfey PN. A high-resolution root spatiotemporal map reveals dominant expression patterns. Science 2007; 318:801-6.
20. Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Rust AG, Pan Z, Schilstra MJ, Clarke PJ, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H. A genomic regulatory network for development. Science 2002; 295:1669-78.
21. Pourquie O. The segmentation clock: converting embryonic time into spatial pattern. Science 2003; 301:328-30.
22. Levine M, Davidson EH. Gene regulatory networks for development. Proc Natl Acad Sci USA 2005; 102:4936-42.
23. Chilcott GS, Hughes KT. Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli. Microbiol Mol Biol Rev 2000; 64:694-708.
24. Macnab RM. Genetics and biogenesis of bacterial flagella. Annu Rev Genet 1992; 26:131-58.
25. Shapiro L. The bacterial flagellum: from genetic network to complex architecture. Cell 1995; 80:525-7.
26. Elowitz MB, Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature 2000; 403:335-8.
27. Dunlap JC. Common threads in eukaryotic circadian systems. Curr Opin Genet Dev 1998; 8:400-6.
28. Holtzendorff J, Reinhardt J, Viollier PH. Cell cycle control by oscillating regulatory proteins in Caulobacter crescentus. Bioessays 2006; 28:355-61.
29. Krylov DM, Nasmyth K, Koonin EV. Evolution of eukaryotic cell cycle regulation: stepwise addition of regulatory kinases and late advent of the CDKs. Curr Biol 2003; 13:173-7.
30. 1 cyclins. Cell 1993; 74:993-1007.
31. Elledge SJ. Cell cycle checkpoints: preventing an identity crisis. Science 1996; 274:1664-72.
32. Gasch AP, Huang M, Metzner S, Botstein D, Elledge SJ, Brown PO. Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. Mol Biol Cell 2001; 12:2987-3003.
33. Etkin LD. Regulation of the mid-blastula transition in amphibians. Dev Biol (NY 1985) 1988; 5:209-25.
34. Orlando DA, Lin CY, Bernard A, Iversen ES, Hartemink AJ, Haase SB. A probabilistic model for cell cycle distributions in synchrony experiments. Cell Cycle 2007; 6:478-88.