Application of molecular techniques to evaluate the methanogenic archaea and anaerobic bacteria in the presence of oxygen with different COD:Sulfate ratios in a UASB reactor

Anaerobe

Volumn 14, Issue 4, 2008, Pages 209-218

  Hirasawa, Julia Sumiko ^a   Sarti, Arnaldo ^a   Del Aguila, Nora Katia Saavedra ^a   Varesche, Maria Bernadete A ^a  

^a Escola de Engenharia de Sao Carlos   (Brazil)

Author keywords

Ethanol; FISH; Methanogenic archaea; Oxygen; Sulfate reducing bacteria

Indexed keywords

ALCOHOL; OXYGEN; SULFATE;

ANAEROBIC BACTERIUM; ANAEROBIC METABOLISM; ARTICLE; BACTERIAL CELL; BACTERIAL METABOLISM; CHEMICAL OXYGEN DEMAND; CONTROLLED STUDY; DESULFITOBACTERIUM; DESULFOVIBRIO VULGARIS; FLUORESCENCE IN SITU HYBRIDIZATION; METHANOGENIC ARCHAEON; MICROBIAL COMMUNITY; MICROSCOPY; MOLECULAR BIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SHEWANELLA; SULFATE REDUCING BACTERIUM; UPFLOW REACTOR;

ARCHAEA; BACTERIA, ANAEROBIC; BIOREACTORS; DNA FINGERPRINTING; DNA, ARCHAEAL; DNA, BACTERIAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ETHANOL; IN SITU HYBRIDIZATION, FLUORESCENCE; METHANE; NUCLEIC ACID DENATURATION; OLIGONUCLEOTIDE PROBES; OXYGEN; SEQUENCE ANALYSIS, DNA; SEWAGE; SULFATES;

ARCHAEA; BACTERIA (MICROORGANISMS); DESULFITOBACTERIUM HAFNIENSE; DESULFOVIBRIO VULGARIS SUBSP. VULGARIS; METHANOSAETA SP.; SHEWANELLA SP.;

EID: 50849141672     PISSN: 10759964     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.anaerobe.2008.06.003     Document Type: Article

References (53)

1. Colleran E., Finnegan S., and Lens P. Anaerobic treatment of sulphate-containing waste streams. Antonie Leeuwenhoek 67 (1995) 29-46
2. Lens P.N.L., Visser A., Janssen A.J.H., Hulshoff Pol L.W., and Lettinga G. Biotechnological treatment of sulfate-rich wastewaters. Crit Rev Environ Sci Technol 28 1 (1998) 41-88
3. Oude Elferink S.J.W.H., Visser A., and Hulshoff Pol L.W. Sulfate reduction in methanogenic bioreactors. FEMS Microbiol Rev 15 (1994) 119-136
4. O'Flaherty V., Mahony T., O'Kennedy R., and Colleran E. Effect of pH on the growth kinetics and sulphide toxicity thresholds of a range of methanogenic, syntrophic and sulphate-reducing bacteria. Process Biochem 33 (1998) 555-569
5. Omil F., Lens P., Hulshoff Pol L.W., and Lettinga G. Effect of upflow velocity and sulphite concentration on volatile fatty acids degradation in a sulphidogenic UASB reactor. Process Biochem 31 7 (1996) 699-710
6. Zhou W., Imai T., Ukita M., Li F., and Yuasa A. Effect of limited aeration on the anaerobic treatment of evaporator condensate from a sulfite pulp mill. Chemosphere 66 (2007) 924-929
7. Kaksonen A.H., Franzmann P.D., and Puhakka J.A. Effects of hydraulic retention time and sulfide toxicity on ethanol and acetate oxidation in sulfate-reducing metal-precipitating fluidized-bed reactor. Biotechnol Bioeng 86 3 (2004) 332-343
8. Icgen B., and Harrison S. Identification of population dynamics in sulfate-reducing consortia on exposure to sulfate. Res Microbiol 157 (2006) 922-927
9. Nagpal S., Chuichulcherm S., Livingston A., and Peeva L. Ethanol utilization by sulfate-reducing bacteria: an experimental and modeling study. Biotechnol Bioeng 70 (2000) 533-543
10. Visser A., Gao Y., and Lettinga G. Effects of short term temperature increases on the mesophilic breakdown of sulfate-containing synthetic wastewater. Water Res 27 (1993) 541-556
11. Ito T., Nielsen J.L., Okabe S., Watanabe Y., and Nielsen P.H. Phylogenetic identification and substrate uptake patterns of sulfate-reducing bacteria inhabiting an oxic-anoxic sewer biofilm determined by combining microautoradiography and fluorescent in situ hybridization. Appl Environ Microbiol 68 1 (2002) 356-364
12. Díaz E.E., Stams A.J.M., Amils R., and Sanz J.L. Phenotypic properties and microbial diversity of methanogenic granules from a full-scale upflow anaerobic sludge bed reactor treating brewery wastewater. Appl Environ Microbiol 72 7 (2006) 4942-4949
13. Buzzini A.P., Gianotti E.P., and Pires E.C. UASB performance for bleached and unbleached kraft pulp synthetic wastewater treatment. Chemosphere 59 (2005) 55-61
14. Zinder S.H., Cardwell S.C., Anguish T., Lee M., and Koch M. Methanogenesis in a thermofilic (58 °C) anaerobic digestor. Methanothrix sp. as an important acetoclastic methanogen. Appl Environ Microbiol 47 (1984) 796-807
15. Widdel F, Pfennig N. Dissimilatory sulfate- or sulfur-reducing bacteria. In: Krieg NR, Holt JG, editors. Bergey's manual of systematic bacteriology, vol. 1. 1984. p. 663-79.
16. Dubourguier HC, Buisson MN, Tissier JP, Prensier G, Albagnac G. Structural characteristics and metabolic activities of granular anaerobic sludge on a mixed defined substrate. In: Granular anaerobic sludge; microbiology and technology, proceedings of the GASTMAT-workshop, The Netherlands: Pudoc; 1987. p. 78-86.
17. Metcalf & Eddy. Wastewater engineering-treatment and reuse. 4th ed. McGraw-Hill, 2003.
18. APHA-AWWA-WPCF. Standard methods for the examination of water and wastewater. 20th ed. Washington, DC, USA: American Public Health Association/American Water Works Association/Water Environment Federation; 1999.
19. Dilallo R., and Albertson O.E. Volatile acids by direct titration. JWPCF 33 4 (1961) 356-365
20. Ripley L.E., Boyle W.C., and Converse J.C. Improved alkalimetric monitoring for anaerobic digestion of high-strength wastes. JWPCF 58 5 (1986) 406-411
21. Amann R.I., Binder B.J., and Olson R.J. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56 (1990) 1919-1925
22. Stahl D.A., and Amann R.I. Development and application of nucleic acid techniques in bacterial systematics vol. 8 (1991), Wiley, London, UK p. 207-48
23. Manz W., Amann R., Ludwig W., Wagner M., and Schleifer K.H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst Appl Environ Microbiol 15 (1992) 593-600
24. Araujo J.C., Brucha G., Campos J.R., and Vazoller R.F. Monitoring the development of anaerobic biofilms using fluorescence in situ hybridization and confocal laser scanning microscopy. Water Sci Tech 41 12 (2000) 69-77
25. Griffiths R.I., Whiteley A.S., O'Donnell A.G., and Bailey M.J. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA and rRNA-based microbial community compositon. Appl Environ Microbiol 66 (2000) 5488-5491
26. Kudo Y., Nakajima T., Miyaki T., and Oyaizu H. Methanogen flora of paddy soils in Japan. FEMS Microbiol Ecol 23 (1997) 39-48
27. Nielsen A.T., Liu W.T., Filipe C., Grady L., Molin S., and Stahl D. Identification of a novel group of bacteria in sludge from a deteriorated biological phosphorus removal reactor. Appl Environ Microbiol 65 (1999) 1251-1258
28. Nakagawa T., Sato S., Yamamoto Y., and Fukui F. Successive changes in community structure of an ethylbenzene-degrading sulfate-reducing consortium. Water Res 36 (2001) 2813-2823
29. Buzzini A.P., Sakamoto I.K., Varesche M.B., and Pires E.C. Evaluation of the microbial diversity in an UASB reactor treating wastewater from an unbleached pulp plant. Process Biochem 41 (2006) 168-176
30. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 (1987) 406-425
31. Alphenaar P.A., Visser A., and Lettinga G. The effect of liquid upward velocity and hydraulic retention time on granulation in UASB reactors treating wastewater with a high sulphate content. Bioresour Technol 43 (1993) 249-258
32. Zitomer D.H., and Shrout J.D. Feasibility and benefits of methanogenesis under oxygen-limited conditions. Waste Manage 18 (1998) 107-116
33. Speece R.E. Anaerobic biotechnology for industrial wastewaters (1996), Archae Press, Nashville
34. Widdel F. Microbiology and ecology of sulfate- and sulfur-reducing bacteria. In: Zehnder A. (Ed). Biology of anaerobic microorganisms (1988), Wiley
35. Kato M.K., Field J.A., and Lettinga G. Anaerobe tolerance to oxygen and the potentials of anaerobic and aerobic cocultures for wastewater treatment. Braz J Chem Eng 14 4 (1997) 395-407
36. Kato M.T., Field J.A., and Lettinga G. Methanogenesis in granular sludge exposed to oxygen. FEMS Microbiol Lett 114 (1993) 317-324
37. Madigan M.T., Martinko J.M., and Parker J. Brock biology of microorganisms. 9th ed. (2000), Prentice-Hall, Inc.
38. 2- ratios on mesophilic anaerobic reactor biomass populations: physico-chemical and microbiological properties. FEMS Microbiol Ecol 56 (2006) 141-153
39. Scott J.H., and Nealson K.H. A biochemical study of the intermediary carbon metabolism of Shewanella putrefaciens. J Bacteriol 176 11 (1994) 3408-3411
40. Liu B., Zhang F., Feng X., Liu Y., Yan X., Zhang X., et al. Thauera and Azoarcus as functionally important genera in a denitrifying quinoline-removal bioreactor as revealed by microbial community structure comparison. FEMS Microbiol Ecol 55 (2006) 274-286
41. Nonaka H., Keresztes G., Shinoda Y., Ikenaga Y., Abe M., Naito K., et al. Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195. J Bacteriol 188 6 (2006) 2262-2274
42. Suyama A., Iwakiri R., Kai K., Tokunaga T., Sera N., and Furukawa K. Isolation and characterization of Desulfobacterium sp. strain Y51 capable of efficient dehalogenation of tetrachloroetheno and polychloroethanes. Biosci Biotechnol Biochem 65 (2001) 1474-1481
43. Amann R.I., Ludwig W., and Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59 (1995) 143-169
44. 2 or nitrate by sulfate-reducing bacteria. Arch Microbiol 158 (1992) 93-99
45. Cypionka H. Oxygen respiration by Desulfovibrio species. Annu Rev Microbiol 54 (2000) 827-848
46. Holmer M., and Storkholm P. Sulphate reduction and sulphur cycling in lake sediments: a review. Freshwater Biol 46 (2001) 431-451
47. Dojka M.A., Hugenholtz P., Haak S.K., and Pace N.R. Microbial diversity in a hydrocarbon and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64 10 (1998) 3869-3877
48. Laanbroek H.J. Competition for sulfate and ethanol among Desulfobacter, Desulfobulbus, and Desulfovibrio species isolated from intertidal sediments. Appl Environ Microbiol 47 2 (1984) 329-334
49. Pender S., Toomey M., Carton M., Eardly D., Patching J.W., Colleran E., et al. Long-term effects of operating temperature and sulphate addition on the methanogenic community structure of anaerobic hybrid reactors. Water Res 38 (2004) 619-630
50. Grothenhuis J.T.C., Smit M., Plugge C.M., Yuansheng X., van Lammeren A.A.M., Stams A.J.M., et al. Bacteriological composition and structure of granular sludge adapted to different substrates. Appl Environ Microbiol 57 7 (1991) 1942-1949
51. Yoda M., Kitagawa M., and Miyaji Y. Long term competition between sulfate-reducing and methane-producing bacteria for acetate in anaerobic biofilm. Water Res 21 (1987) 1547-1556
52. Grabowski A., Nercessian O., Fayolle F., Blanceht D., and Jeanthon C. Microbial diversity in production waters of a low-temperature biodegraded oil reservoir. FEMS Microbiol Ecol 54 (2005) 427-443
53. Schmidt J.E., and Ahring B.K. Immobilisation patterns and dynamics of acetate-utilising methanogens immobilised in sterile granular sludge in upflow anaerobic sludge blanket reactors. Appl Environ Microbiol 65 (1999) 1050-1054