-
1
-
-
20044366379
-
Different seroprevalence and molecular epidemiology patterns of hepatitis C virus infection in Italy
-
Ansaldi F, Bruzzone B, Salmaso S, Rota MC, Durando P, Gasparini R, Icardi G. 2005. Different seroprevalence and molecular epidemiology patterns of hepatitis C virus infection in Italy. J Med Virol 76:327-332.
-
(2005)
J Med Virol
, vol.76
, pp. 327-332
-
-
Ansaldi, F.1
Bruzzone, B.2
Salmaso, S.3
Rota, M.C.4
Durando, P.5
Gasparini, R.6
Icardi, G.7
-
2
-
-
0033033612
-
Variation of hepatitis C virus following serial transmission: Multiple mechanisms of diversification of the hypervariable region and evidence for convergent genome evolution
-
Casino C, McAllister J, Davidson F, Power J, Lawlor E, Yap PL, Simmonds P, Smith DB. 1999. Variation of hepatitis C virus following serial transmission: Multiple mechanisms of diversification of the hypervariable region and evidence for convergent genome evolution. J Gen Virol 80:717-725.
-
(1999)
J Gen Virol
, vol.80
, pp. 717-725
-
-
Casino, C.1
McAllister, J.2
Davidson, F.3
Power, J.4
Lawlor, E.5
Yap, P.L.6
Simmonds, P.7
Smith, D.B.8
-
3
-
-
0036270738
-
Endemic hepatitis C virus infection in a Sicilian town: Further evidence for iatrogenic transmission
-
Di Stefano R, Stroffolini T, Ferraro D, Usticano A, Valenza LM, Montalbano L, Pomara G, Craxi A. 2002. Endemic hepatitis C virus infection in a Sicilian town: Further evidence for iatrogenic transmission. J Med Virol 67:339-344.
-
(2002)
J Med Virol
, vol.67
, pp. 339-344
-
-
Di Stefano, R.1
Stroffolini, T.2
Ferraro, D.3
Usticano, A.4
Valenza, L.M.5
Montalbano, L.6
Pomara, G.7
Craxi, A.8
-
4
-
-
0029949286
-
Basic concepts in RNA virus evolution
-
Domingo E, Escarmís C, Sevilla N, Moya A, Elena SF, Quer J, Novella IS, Holland JJ. 1996. Basic concepts in RNA virus evolution. FASEB J 10:859-864.
-
(1996)
FASEB J
, vol.10
, pp. 859-864
-
-
Domingo, E.1
Escarmís, C.2
Sevilla, N.3
Moya, A.4
Elena, S.F.5
Quer, J.6
Novella, I.S.7
Holland, J.J.8
-
5
-
-
0029559462
-
Coalescents and genealogical structure under neutrality
-
Donnelly P, Tavaré S. 1995. Coalescents and genealogical structure under neutrality. Annu Rev Genet 29:401-421.
-
(1995)
Annu Rev Genet
, vol.29
, pp. 401-421
-
-
Donnelly, P.1
Tavaré, S.2
-
7
-
-
0036021407
-
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
-
Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W. 2002. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161:1307-1320.
-
(2002)
Genetics
, vol.161
, pp. 1307-1320
-
-
Drummond, A.J.1
Nicholls, G.K.2
Rodrigo, A.G.3
Solomon, W.4
-
8
-
-
0036402567
-
Comparative rates of nucleotide sequence variation in the hypervariable region of E1/E2 and the NS5b region of hepatitis C virus in patients with a spectrum of liver disease resulting from a common source of infection
-
Duffy M, Salemi M, Sheehy N, Vandamme AM, Hegarty J, Curry M, Nolan N, Kelleher D, McKiernan S, Hall WW. 2002. Comparative rates of nucleotide sequence variation in the hypervariable region of E1/E2 and the NS5b region of hepatitis C virus in patients with a spectrum of liver disease resulting from a common source of infection. Virology 301:354-364.
-
(2002)
Virology
, vol.301
, pp. 354-364
-
-
Duffy, M.1
Salemi, M.2
Sheehy, N.3
Vandamme, A.M.4
Hegarty, J.5
Curry, M.6
Nolan, N.7
Kelleher, D.8
McKiernan, S.9
Hall, W.W.10
-
9
-
-
20244370836
-
Nosocomial transmission of HCV in the liver unit of a tertiary care center
-
Forns X, Martínez-Bauer E, Feliu A, García-Retortillo M, Martín M, Gay E, Navasa M, Sánchez-Tapias JM, Bruguera M, Rodés J. 2005. Nosocomial transmission of HCV in the liver unit of a tertiary care center. Hepatology 41:115-122.
-
(2005)
Hepatology
, vol.41
, pp. 115-122
-
-
Forns, X.1
Martínez-Bauer, E.2
Feliu, A.3
García-Retortillo, M.4
Martín, M.5
Gay, E.6
Navasa, M.7
Sánchez-Tapias, J.M.8
Bruguera, M.9
Rodés, J.10
-
10
-
-
0028782096
-
Sampling theory for neutral alleles in a varying environment
-
Griffiths RC, Tavaré S. 1994. Sampling theory for neutral alleles in a varying environment. Philos Trans R Soc Lond B Biol Sci 344:403-410.
-
(1994)
Philos Trans R Soc Lond B Biol Sci
, vol.344
, pp. 403-410
-
-
Griffiths, R.C.1
Tavaré, S.2
-
11
-
-
12644279860
-
Prevalence, risk factors, and genotype distribution of hepatitis C virus infection in the general population: A community-based survey in southern Italy
-
Guadagnino V, Stroffolini T, Rapicetta M, Costantino A, Kondili LA, Menniti-Ippolito F, Caroleo B, Costa C, Griffo G, Loiacono L, Pisani V, Focà A, Piazza M. 1997. Prevalence, risk factors, and genotype distribution of hepatitis C virus infection in the general population: A community-based survey in southern Italy. Hepatology 26:1006-1011.
-
(1997)
Hepatology
, vol.26
, pp. 1006-1011
-
-
Guadagnino, V.1
Stroffolini, T.2
Rapicetta, M.3
Costantino, A.4
Kondili, L.A.5
Menniti-Ippolito, F.6
Caroleo, B.7
Costa, C.8
Griffo, G.9
Loiacono, L.10
Pisani, V.11
Focà, A.12
Piazza, M.13
-
12
-
-
0036203059
-
Use of phylogenetic analysis of hepatitis C virus (HCV) hypervariable region 1 sequences to trace an outbreak of HCV in an autodialysis unit
-
Halfon P, Roubicek C, Gerolami V, Quentin Y, Khiri H, Pepe G, Berland Y. 2002. Use of phylogenetic analysis of hepatitis C virus (HCV) hypervariable region 1 sequences to trace an outbreak of HCV in an autodialysis unit. J Clin Microbiol 40:1541-1545.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 1541-1545
-
-
Halfon, P.1
Roubicek, C.2
Gerolami, V.3
Quentin, Y.4
Khiri, H.5
Pepe, G.6
Berland, Y.7
-
13
-
-
50849114331
-
-
Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
-
Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
-
-
-
-
14
-
-
0031835126
-
Maximum likelihood estimation of population growth rates based on the coalescent
-
Kuhner MK, Yamato J, Felsenstein J. 1998. Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149:429-434.
-
(1998)
Genetics
, vol.149
, pp. 429-434
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
15
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar S, Tamura K, Jakobsen IB, Nei M. 2001. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
16
-
-
0033945945
-
Hepatitis C virus infection and alanine transaminase levels in the general population: A survey in a southern Italian town
-
Maio G. D'Argenio P, Stroffolini T, Bozza A, Sacco L, Tosti ME, Intorcia M, Fossi E, D'Alessio G, Kondili LA, Rapicetta M, Mele A. 2000. Hepatitis C virus infection and alanine transaminase levels in the general population: A survey in a southern Italian town. J Hepatol 33:116-120.
-
(2000)
J Hepatol
, vol.33
, pp. 116-120
-
-
Maio, G.1
D'Argenio, P.2
Stroffolini, T.3
Bozza, A.4
Sacco, L.5
Tosti, M.E.6
Intorcia, M.7
Fossi, E.8
D'Alessio, G.9
Kondili, L.A.10
Rapicetta, M.11
Mele, A.12
-
17
-
-
0035005705
-
Phylogenetic analyses confirm the high prevalence of hepatitis C virus (HCV) type 4 in the Seine-Saint-Denis district (France) and indicate seven different HCV-4 subtypes linked to two different epidemiological patterns
-
Morice Y, Roulot D, Grando V, Stirnemann J, Gault E, Jeantils V, Bentata M, Jarrousse B, Lortholary O, Pallier C, Dény P. 2001. Phylogenetic analyses confirm the high prevalence of hepatitis C virus (HCV) type 4 in the Seine-Saint-Denis district (France) and indicate seven different HCV-4 subtypes linked to two different epidemiological patterns. J Gen Virol 82:1001-1012.
-
(2001)
J Gen Virol
, vol.82
, pp. 1001-1012
-
-
Morice, Y.1
Roulot, D.2
Grando, V.3
Stirnemann, J.4
Gault, E.5
Jeantils, V.6
Bentata, M.7
Jarrousse, B.8
Lortholary, O.9
Pallier, C.10
Dény, P.11
-
18
-
-
0041852686
-
Phylogenetic analysis of hepatitis C virus isolates indicates a unique pattern of endemic infection in Cameroon
-
Ndjomou J, Pybus OG, Matz B. 2003. Phylogenetic analysis of hepatitis C virus isolates indicates a unique pattern of endemic infection in Cameroon. J Gen Virol 84:2333-2341.
-
(2003)
J Gen Virol
, vol.84
, pp. 2333-2341
-
-
Ndjomou, J.1
Pybus, O.G.2
Matz, B.3
-
19
-
-
0030875053
-
Epidemiology of hepatitis C virus infection in an area of Southern Italy
-
Osella AR, Misciagna G, Leone A, Di Leo A, Fiore G. 1997. Epidemiology of hepatitis C virus infection in an area of Southern Italy. J Hepatol 27:30-35.
-
(1997)
J Hepatol
, vol.27
, pp. 30-35
-
-
Osella, A.R.1
Misciagna, G.2
Leone, A.3
Di Leo, A.4
Fiore, G.5
-
20
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada D, Crandall KA. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
21
-
-
0033911330
-
An integrated framework for the inference of viral population history from reconstructed genealogies
-
Pybus OG, Rambaut A, Harvey PH. 2000. An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155:1429-1437.
-
(2000)
Genetics
, vol.155
, pp. 1429-1437
-
-
Pybus, O.G.1
Rambaut, A.2
Harvey, P.H.3
-
22
-
-
0035933522
-
The epidemic behavior of the hepatitis C virus
-
Pybus OG, Charleston MA, Gupta S, Rambaut A, Holmes EC, Harvey PH. 2001. The epidemic behavior of the hepatitis C virus. Science 292:2323-2325.
-
(2001)
Science
, vol.292
, pp. 2323-2325
-
-
Pybus, O.G.1
Charleston, M.A.2
Gupta, S.3
Rambaut, A.4
Holmes, E.C.5
Harvey, P.H.6
-
24
-
-
0033515016
-
Coalescent estimates of HIV-1 generation time in vivo
-
Rodrigo AG, Shpaer EG, Delwart EL, Iversen AK, Gallo MV, Brojatsch J, Hirsch MS, Walker BD, Mullins JI. 1999. Coalescent estimates of HIV-1 generation time in vivo. Proc Natl Acad Sci 96:2187-2191.
-
(1999)
Proc Natl Acad Sci
, vol.96
, pp. 2187-2191
-
-
Rodrigo, A.G.1
Shpaer, E.G.2
Delwart, E.L.3
Iversen, A.K.4
Gallo, M.V.5
Brojatsch, J.6
Hirsch, M.S.7
Walker, B.D.8
Mullins, J.I.9
-
25
-
-
0029813071
-
Heterogeneity of epatiti C virus genotype 2 variants in West Central Africa (Guinea Conakry)
-
Ruggieri A, Argentini C, Kouruma K, Chionne P, D'Ugo E, Spada E, Dettori S, Sabbatani S, Rapicetta M. 1996. Heterogeneity of epatiti C virus genotype 2 variants in West Central Africa (Guinea Conakry). J Gen Virol 77:2076-2076.
-
(1996)
J Gen Virol
, vol.77
, pp. 2076-2076
-
-
Ruggieri, A.1
Argentini, C.2
Kouruma, K.3
Chionne, P.4
D'Ugo, E.5
Spada, E.6
Dettori, S.7
Sabbatani, S.8
Rapicetta, M.9
-
26
-
-
0028905430
-
Variability of hepatitis C virus
-
Simmonds P. 1995. Variability of hepatitis C virus. Hepatology 21:570-583.
-
(1995)
Hepatology
, vol.21
, pp. 570-583
-
-
Simmonds, P.1
-
27
-
-
7444256169
-
Genetic diversity and evolution of hepatitis C virus - 15 years on
-
Simmonds P. 2004. Genetic diversity and evolution of hepatitis C virus - 15 years on. J Gen Virol 85:3173-3188.
-
(2004)
J Gen Virol
, vol.85
, pp. 3173-3188
-
-
Simmonds, P.1
-
28
-
-
0027522145
-
Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region
-
Simmonds P, Holmes EC, Cha TA, Chan SW, McOmish F, Irvine B, Beall E, Yap PL, Kolberg J, Urdea MS. 1993. Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region. J Gen Virol 74:2391-2399.
-
(1993)
J Gen Virol
, vol.74
, pp. 2391-2399
-
-
Simmonds, P.1
Holmes, E.C.2
Cha, T.A.3
Chan, S.W.4
McOmish, F.5
Irvine, B.6
Beall, E.7
Yap, P.L.8
Kolberg, J.9
Urdea, M.S.10
-
29
-
-
0031017973
-
The origin of hepatitis C virus genotypes
-
Smith DB, Pathirana S, Davidson F, Lawlor E, Power J, Yap PL, Simmonds P. 1997. The origin of hepatitis C virus genotypes. J Gen Virol 78:321-328.
-
(1997)
J Gen Virol
, vol.78
, pp. 321-328
-
-
Smith, D.B.1
Pathirana, S.2
Davidson, F.3
Lawlor, E.4
Power, J.5
Yap, P.L.6
Simmonds, P.7
-
30
-
-
0028785267
-
High prevalence of hepatitis C virus infection in a small central Italian town: Lack of evidence of parenteral exposure
-
Stroffolini T, Menchinelli M, Taliani G, Dambruoso V, Poliandri G, Bozza A, Lecce R, Clementi C, Ippolito FM, Compagnoni A, De Bac C. 1995. High prevalence of hepatitis C virus infection in a small central Italian town: Lack of evidence of parenteral exposure. Ital J Gastroenterol 27:235-238.
-
(1995)
Ital J Gastroenterol
, vol.27
, pp. 235-238
-
-
Stroffolini, T.1
Menchinelli, M.2
Taliani, G.3
Dambruoso, V.4
Poliandri, G.5
Bozza, A.6
Lecce, R.7
Clementi, C.8
Ippolito, F.M.9
Compagnoni, A.10
De Bac, C.11
-
31
-
-
50849134987
-
-
Swofford DL. 2002. PAUP*: Phylogenetic analysis using parsimony * and other methods, version 4. Sunderland, MA, USA: Sinauer Associates
-
Swofford DL. 2002. PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4. Sunderland, MA, USA: Sinauer Associates.
-
-
-
-
32
-
-
0037180344
-
A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades
-
Tanaka Y, Hanada K, Mizokami M, Yeo AE, Shih JW, Gojobori T, Alter HJ. 2002. A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades. Proc Natl Acad Sci 99:15584-15589.
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 15584-15589
-
-
Tanaka, Y.1
Hanada, K.2
Mizokami, M.3
Yeo, A.E.4
Shih, J.W.5
Gojobori, T.6
Alter, H.J.7
-
33
-
-
19944385900
-
Molecular evolutionary analyses implicate injection treatment for schistosomiasis in the initial hepatitis C epidemics in Japan
-
Tanaka Y, Hanada K, Orito E, Akahane Y, Chayama K, Yoshizawa H, Sata M, Ohta N, Miyakawa Y, Gojobori T, Mizokami M. 2005. Molecular evolutionary analyses implicate injection treatment for schistosomiasis in the initial hepatitis C epidemics in Japan. J Hepatol 42:47-53.
-
(2005)
J Hepatol
, vol.42
, pp. 47-53
-
-
Tanaka, Y.1
Hanada, K.2
Orito, E.3
Akahane, Y.4
Chayama, K.5
Yoshizawa, H.6
Sata, M.7
Ohta, N.8
Miyakawa, Y.9
Gojobori, T.10
Mizokami, M.11
-
34
-
-
33646173074
-
Investigating the origin and spread of hepatitis C virus genotype5a
-
Verbeeck J, Maes P, Lemey P, Pybus OG, Wollants E, Song E, Nevens F, Fevery J, Delport W, Van der Merwe S, Van Ranst M. 2006. Investigating the origin and spread of hepatitis C virus genotype5a. J Virol 80:4220-4226.
-
(2006)
J Virol
, vol.80
, pp. 4220-4226
-
-
Verbeeck, J.1
Maes, P.2
Lemey, P.3
Pybus, O.G.4
Wollants, E.5
Song, E.6
Nevens, F.7
Fevery, J.8
Delport, W.9
Van der Merwe, S.10
Van Ranst, M.11
-
35
-
-
0033916804
-
Epidemiology of hepatitis C: Geographic differences and temporal trends
-
Wasley A, Alter MJ. 2000. Epidemiology of hepatitis C: Geographic differences and temporal trends. Semin Liver Dis 20:1-16.
-
(2000)
Semin Liver Dis
, vol.20
, pp. 1-16
-
-
Wasley, A.1
Alter, M.J.2
|