Origins of traditional cultivars of Primula sieboldii revealed by nuclear microsatellite and chloroplast DNA variations

Breeding Science

Volumn 58, Issue 4, 2008, Pages 347-354

  Honjo, Masanori ^a,b   Handa, Takashi ^c   Tsumura, Yoshihiko ^d   Washitani, Izumi ^a   Ohsawa, Ryo ^c  

^a UNIVERSITY OF TOKYO   (Japan)

^b NATIONAL AGRICULTURAL RESEARCH CENTER FOR TOHOKU REGION   (Japan)

^c UNIVERSITY OF TSUKUBA   (Japan)

^d FORESTRY AND FOREST PRODUCTS RESEARCH INSTITUTE   (Japan)

Author keywords

Assignment test; Gene bank; Genetic resource; Haplotype; Horticulture

Indexed keywords

PRIMULA SIEBOLDII; PRIMULACEAE;

EID: 50849100858     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.58.347     Document Type: Article

References (43)

1. Bandelt, H.J., P. Forster and A. Rohl (1999) Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16: 37-48.
2. Deguilloux, M.F., M.H. Pemonge, L. Bertel, A. Kremer and J. Petit (2003) Checking the geographical origin of oak wood: molecular and statistical tools. Mol. Ecol. 12: 1629-1636.
3. Demesure, B., N. Sodzi and R.J. Petit (1995) A set of universal primers for amplification of polymorphic noncoding regions of mitochondrial and chloroplast DNA in plants. Mol. Ecol. 4: 129-131.
4. Environment Agency of Japan (2000) Threatened Wildlife of Japan, Red Data Book, Vascular Plants. Environment Agency of Japan, Tokyo, p. 660.
5. Fofana, B., J.P. Baudoin, X. Vekemans, D.G. Debouck and P. du Jardin (1999) Molecular evidence for an Andean origin and a secondary gene pool for the Lima bean (Phaseolus lunatus L.) using chloroplast DNA. Theor. Appl. Genet. 98: 202-212.
6. Frantz, A.C., T. Pourtois, M. Heuertz, L. Schley, M.C. Flamand, A.Krier, S. Bertouille, F. Chaumont and T. Burke (2006) Genetic structure and assignment tests demonstrate illegal translocation of red deer (Cervus elaphus) into a continuous population. Mol. Ecol. 15: 3191-3203.
7. Friesen, N., S. Pollner, K. Bachmann and F.R. Blattner (1999) RAPDs and noncoding chloroplast DNA reveal a single origin of the cultivated Allium fistulosum from A. altaicum (Alliaceae). Am. J. Bot. 86: 554-562.
8. Hamilton, M.B. (1999) Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Mol. Ecol. 8: 513-525.
9. Hare, M.P., S.K. Allen Jr., P. Bloomer, M.D. Camara, R.B. Carnegie, J. Murfree, M. Luckenbach, D. Meritt, C. Morrison, K. Paynter, K.S.Reece and C.G. Rose (2006) A genetic test for recruitment enhancement in Chesapeake Bay oysters, Crassostrea virginica, after population supplementation with a disease tolerant strain. Conserv. Genet. 7: 717-734.
10. Harter, A.V., K.A. Gardner, D. Falush, D.L. Lentz, R.A. Bye and L.H.Rieseberg (2004) Origin of extant domesticated sunflowers in eastern North America. Nature 430: 201-205.
11. Hirai, Y. (1983) Geomorphic development of the alluvial lowlands in the central part of the Kanto plain, Japan. Geographical Review of Japan 56: 679-694.
12. Honjo, M., S. Ueno, Y. Tsumura, I. Washitani and R. Ohsawa (2004) Phylogeographic study based on intraspecific sequence variation of chloroplast DNA for the conservation of genetic diversity in the Japanese endangered species Primula sieboldii. Biol. Conserv. 120: 211-220.
13. Honjo, M., N. Kitamoto, S. Ueno, Y. Tsumura, I. Washitani and R. Ohsawa (2008a) Management units of the endangered herb Primula sieboldii based on microsatellite variation among and within populations throughout Japan. Conserv. Genet. DOI 10.1007/s10592-007-9292-4.
14. Honjo, M., S. Ueno, Y. Tsumura, T. Handa, I. Washitani and R. Ohsawa (2008b) Tracing the origins of stocks of the endangered species Primula sieboldii using microsatellites and chloroplast DNA. Conserv. Genet. 9: 1139-1147.
15. Huang, J.C. and M. Sun (2000) Genetic diversity and relationships of sweet potato and its wild relatives in Ipomoea series Batatas (Convolvulaceae) as revealed by inter-simple sequence repeat (ISSR) and restriction analysis of chloroplast DNA. Theor. Appl. Genet. 100: 1050-1060.
16. Isagi, Y., M. Honjo and I. Washitani (2001) Development of microsatellite markers for Primula sieboldii using degenerate oligonucleotides-primed PCR-amplified DNA. Mol. Ecol. Notes 1: 22-24.
17. Iwata, H., T. Kato and S. Ohno (2000) Triparental origin of Damask roses. Gene 259: 53-59.
18. Kato, J. and M. Mii (2000) Differences in ploidy levels of inter-specific hybrids obtained by reciprocal crosses between Primula sieboldii and P. kisoana. Theor. Appl. Genet. 101: 690-696.
19. Kitamoto, N., M. Honjo, S. Ueno, A. Takenaka, Y. Tsumura, I. Washitani and R. Ohsawa (2005a) Spatial genetic structure among and within populations of Primula sieboldii growing beside separate streams. Mol. Ecol. 14: 149-157.
20. Kitamoto, N., S. Ueno, Y. Tsumura, I. Washitani and R. Ohsawa (2005b) Development of microsatellite markers in Primula sieboldii E. Morren, a threatened herb. Jpn. J. Conserv. Ecol. 10: 47-51.
21. Manel, S., O.E. Gaggiotti and R.S. Waples (2005) Assignment methods: matching biological questions with appropriate techniques. Trends. Ecol. Evol. 20: 136-142.
22. Matsuoka, Y., Y. Vigouroux, M.M. Goodman, G.J. Sanchez, E. Buckler and J. Doebley (2002) A single domestication for maize shown by multilocus microsatellite genotyping. Proc. Natl. Acad. Sci. USA 99: 6080-6084.
23. Matsuoka, Y. (2005) Origin matters: Lessons from the search for the wild ancestor of maize. Breed. Sci. 55: 383-390.
24. Molina-Cano, J.L., J.R. Russell, M.A. Moralejo, J.L. Escacena, G. Arias and W. Powell (2005) Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theor. Appl. Genet. 110: 613-619.
25. Murray, M.G. and W.F. Thompson (1980) Rapid isolation of high molecular weight plant DNA. Nucleic. Acids. Res. 8: 4321-4325.
26. Nishihiro, M.A. and I. Washitani (2006) The spatial and temporal dispersal of seeds and the establishment of seedlings of Primula sieboldii. In: Washitani, I. (ed.) Conservation molecular genetic ecology on Primula sieboldii, University of Tokyo Press, Tokyo, pp. 97-114.
27. Ohta, S., S. Osumi, T. Katsuki, I. Nakamura, T. Yamamoto and Y. Sato (2006) Genetic characterization of flowering cherries (Prunus subgenus Cerasus) using rpl16-rpl14 spacer sequences of chloroplast DNA. J. Jpn. Soc. Hort. Sci. 75: 72-78.
28. Ohtani, M. (2007) Conservation genetics of an endangered plant species, Primula kisoana Miquel var. kisoana (Primulaceae). Doctoral dissertation, The University of Tokyo.
29. Olsen, K.M. and B.A. Schaal (2001) Microsatellite variation in Cassava (Manihot esculenta, Euphorbiaceae) and its wild relatives: Further evidence for a southern Amazonian origin of domestication. Am. J. Bot. 88: 131-142.
30. Paetkau, D., R. Slade, M. Burden and A. Estoup (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation based exploration of accuracy and power. Mol. Ecol. 13: 55-65.
31. Piry, S., A. Alapetite, J.M. Cornuet, D. Paetkau, L. Baudouin and A.Estoup (2004) GENECLASS2: A software for genetic assignment and first-generation migrant detection. J. Hered. 95: 536-539.
32. Rannala, B. and J.L. Mountain (1997) Detecting immigration by using multilocus genotypes. Proc. Natl. Acad. Sci. USA 94: 9197-9221.
33. Richards, A.C. (2003) PRIMULA 2nd edn. Timber Press, Portland, Oregon, p. 346.
34. Sefc, K.M., M.S. Lopes, F. Lefort, R. Botta, K.A. Roubelakis-Angelakis, J. Ibáñes, I. Pejić, H.W. Wagner, J. Glössl and H. Steinkellner (2000) Microsatellite variability in grapevine cultivars from different European regions and evaluation of assignment testing to assess the geographic origin of cultivars. Theor. Appl. Genet. 100: 498-505.
35. Surles, S.E., J. Arnold, A. Schnabel, J.L. Hamrick and B.C. Bongarten (1990) Genetic relatedness in open-pollinated families of two leguminous tree species, Robinia pseudoacacia L. and Gleditsia triacanthos L. Theor. Appl. Genet. 80: 49-56.
36. Taberlet, P., L. Gielly, G. Pautou and J. Bouvet (1991) Universal primers for amplification of three noncoding regions of chloroplast DNA. Plant Mol. Biol. 17: 1105-1109.
37. Tanaka, T., T. Mizutani, M. Shibata, N. Tanikawa and C.R. Parks (2005) Cytogenetic studies on the origin of Camellia x vernalis. V. Estimation of the seed parent of C. x vernalis that evolved about 400 years ago by cpDNA analysis. J. Jpn. Soc. Hort. Sci. 74: 464-468.
38. Torii, T. (1985) Sakurasou. Nihon-TV, Tokyo, p. 151.
39. Ueno, S., Y. Tsumura and I. Washitani (2003) Development of microsatellite markers in Primula sieboldii E. Morren, a threatened Japanese perennial herb. Conserv. Genet. 4: 809-811.
40. Ueno, S., N. Kitamoto, R. Ohsawa, Y. Tsumura and I. Washitani (2005) Nine additional microsatellite markers for Primula sieboldii E. Morren. Conserv. Genet. 6: 1063-1064.
41. Yamazaki, T. (1993) Primula. In: Iwatsuki, K., T. Yamazaki, D.E. Boufford and H. Ohba (eds.) Flora of Japan 3a, Kodansha, Tokyo, pp. 87-94.
42. Yoshida, Y., M. Honjo, N. Kitamoto and R. Ohsawa (2008) Genetic variation and differentiation of floral morphology in wild Primula sieboldii evaluated by image analysis data and SSR markers. Breed. Sci. 58: 301-307.
43. Yoshioka, Y., H. Iwata, R. Ohsawa and S. Ninomiya (2005) Quantitative evaluation of the petal shape variation in Primula sieboldii caused by breeding process in the last 300 years. Heredity 94: 657-663.