Microsatellite variability in grapevine cultivars from different European regions and evaluation of assignment testing to assess the geographic origin of cultivars

Theoretical and Applied Genetics

Volumn 100, Issue 3-4, 2000, Pages 498-505

  Sefc, K M ^a   Lopes, M S ^b   Lefort, F ^c   Botta, R ^d   Roubelakis Angelakis, K A ^c   Ibanez J ^e   Pejic I ^f   Wagner, H W ^g   Glossl J ^a   Steinkellner, H ^a  

^a UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

^b UNIVERSITY OF THE AZORES   (Portugal)

^c UNIVERSITY OF CRETE   (Greece)

^d UNIVERSITY OF TURIN   (Italy)

^e University of Zagreb ^*  (Spain)

^f UNIVERSITY OF ZAGREB   (Croatia)

^g VIENNA UNIVERSITY OF TECHNOLOGY   (Austria)

Author keywords

Genetic variation; Microsatellites; Vitis

Indexed keywords

AUSTRIA; CROATIA; EUROPE; FRANCE; GENE POOL; GENETIC DIFFERENCE; GENETIC MARKER; GENETIC VARIANCE; GENOTYPE; GEOGRAPHIC ORIGIN; GERMANY; GRAPEVINE; GREECE; ITALY; MICROSATELLITE DNA; PORTUGAL; SPAIN;

EID: 0034013366     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220050065     Document Type: Article

References (30)

1. Bowers JE, Meredith CP (1997) The parentage of a classic wine grape, Cabernet Sauvignon. Nature Genet 16:84-87
2. Bowers JE, Dangl GS, Vignani R, Meredith CP (1996) Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitix vinifera L.). Genome 39:628-633
3. Bowers JE, Siret R, This P, Boursiquot JM, Meredith CP (1998) A single pair of parents proposed for a group of varieties in Northeastern France. 7th Int Symp Grapevine Breeding and Genetics, Montpellier, July 1998
4. Bowling AT, Egglestone-Scott ML, Byrns G, Clark RS, Dileanis S, Wictum E (1997) Validation of microsatellite markers for routine horse-parentage testing. Anim Genet 28:247-252
5. Goudet J (1995) FSTAT (Version 1.2): A computer program to calculate F-statistics. J Hered 86:485-486
6. Hokanson SC, Szewc-McFadden AK, Lamboy WF, McFerson JR (1998) Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus x domestica borkh. core subset collection. Theor Appl Genet 97:671-683
7. Lefort F, Douglas GC (1999) An efficient micro-method of DNA isolation from mature leaves of four hardwood tree species Acer, Fraxinus, Prunus and Quercus. Ann For Sci 56:259-263
8. Lodhi MA, Ye GN, Weeden NF, Reisch BI (1994) A simple and efficient method for DNA extraction from grapevine cultivars and Vitis species. Plant Mol Biol Rep 12:6-13
9. Lopes MS, Sefc KM, Eiras Dias E, Steinkellner H, Laimer da Câmara Machado M, da Câmara Machado A (1999) The use of microsatellites for germplasm management in a Portuguese grapevine collection. Theor Appl Genet (in press)
10. Maletić E, Sefc KM, Steinkellner H, Kontić JK, Pejić I (1999) Genetic characterization of Croatian grapevine cultivars and detection of synonymous cultivars in neighboring regions. Vitis 38:79-83
11. MacHugh DE, Shriver MD, Loftus RT, Cunningham P, Bradley DG (1997) Microsatellite DNA variation and the evolution, domestication and phylogeography of Taurine and Zebu cattle (Bor taurus and Bos indicus). Genetics 146:1071-1086
12. Minch E (1997) MICROSAT, version 1.5b. Stanford University Medical Center, Stanford, USA
13. Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182
14. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321-3323
15. Olmo HP (1976) Grapes. In: Simmonds NW (ed) Evolution of crop plants. Longman, London, pp 294-298
16. Paetkau D, Calvert W, Stirling I, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Mol Ecol 4:347-354
17. Petri B, Pääbo S, von Haeseler A, Tautz D (1997) Paternity assessment and population subdivision in a natural population of the larger mouse-eared bat Myotis myotis. Mol Ecol 6:235-242
18. Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered 86:248-249
19. Sefc KM, Steinkellner H, Wagner HW, Glössl J, Regner F (1997) Application of microsatellite markers to parentage studies in grapevine. Vitis 36:179-183
20. Sefc KM, Regner F, Glössl J, Steinkellner H (1998a) Genotyping of grapevine and rootstock cultivars using microsatellite markers. Vitis 37:15-20
21. Sefc KM, Steinkellner H, Glössl J, Kampfer S, Regner F (1998b) Reconstruction of a grapevine pedigree by microsatellite analysis. Theor Appl Genel 97:227-231
22. Sefc KM, Regner F, Turetschek E, Glössl J, Steinkellner H (1999) Identification of microsatellite sequences in Vitis riparia and their applicability for genotyping of different Vitis species. Genome 42:1-7
23. Siegismund HR (1995) G-Stat, version 3.1, genetical statistical programs for the analysis of population data. Arboretum, Royal Veterinary and Agricultural University, Horsholm, Denmark
24. Simonsen BT, Siegismund HR, Arctander P (1998) Population structure of African buffalo inferred from mtDNA sequences and microsatellite loci: high variation but low differentiation. Mol Ecol 7:225-237
25. Sparvoli F, Martin C, Scienza A, Gavazzi G, Tonelli C (1994) Cloning and molecular analysis of structural genes involved in flavonoid and stilbene biosynthesis in grape (Vitis vinifera L.). Plant Mol Biol 24:743-755
26. Thomas MR, Scott NS (1993) Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor Appl Genet 86:985-990
27. Thomas MR, Matsumoto S, Cain P, Scott NS (1993) Repetitive DNA of grapvine: classes present and sequences suitable for cultivar identification. Theor Appl Genet 86:173-180
28. Thomas MR, Cain P, Scott NS (1994) DNA typing of grapevines: A universal methodology and database for describing cultivars and evaluating genetic relatedness. Plant Mol Biol 25:939-949
29. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370
30. Wright S (1951) The genetical structure of populations. Ann Eugen 15:323-354