Corrigendum to Dynamic and stable histone H3 methylation patterns at the Arabidopsis FLC and AP1 loci [Gene, (2008), 423, 1, 43-47] Doi:10.1016/j.gene.2008.06.022;Dynamic and stable histone H3 methylation patterns at the Arabidopsis FLC and AP1 loci

Gene

Volumn 423, Issue 1, 2008, Pages 43-47

  Saleh, Abdelaty ^a,b   Alvarez Venegas, Raul ^a,c   Avramova, Zoya ^a  

^a UNIVERSITY OF NEBRASKA   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

^c CIEA UI ^*  (Mexico)

Author keywords

AP1; ATX1; CLF; FLC; H3K27 methylation; H3K4 methylation

Indexed keywords

HISTONE H3;

AP1 GENE; ARABIDOPSIS; ARTICLE; ENZYME ACTIVITY; FLC GENE; GENE; GENE EXPRESSION; GENE LOCUS; MULTIGENE FAMILY; NONHUMAN; NUCLEOSOME; PLANT GENETICS; PRIORITY JOURNAL; PROTEIN METHYLATION;

ARABIDOPSIS;

EID: 50549099052     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2016.02.043     Document Type: Erratum

References (37)

1. Alvarez-Venegas R., and Avramova Z. Methylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants. Nucleic Acids Res. 33 (2005) 5199-5207
2. Alvarez-Venegas R., Pien S., Sadder M., Witmer X., Grossniklaus U., and Avramova Z. ATX1, an Arabidopsis homolog of trithorax, activates flower homeotic genes. Curr. Biol. 13 (2003) 627-637
3. Álvarez-Venegas R., Sadder M., Hlavacka A., Baluška F., Xia Y., Lu G., Firsov A., Sarath G., Moriyama H., Dubrovsky J., and Avramova Z. The Arabidopsis homolog of trithorax, ATX1, binds phosphoinositide 5-phosphate and the two regulate a common set of target genes. Proc. Natl. Acad. Sci. 103 (2006) 6049-6054
4. Bastow R., Mylne J.S., Lister C., Lippman Z., Martienssen R.A., and Dean C. Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 427 (2004) 164-167
5. Bernstein B.E., et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125 (2006) 315-326
6. Brown M.A., Sims III R.J., Gottlieb P.D., and Tucker P.W. Identification and characterization of Smyd2: a split SET/MYND domain-containing histone H3 lysine 36-specific methyltransferase that interacts with the Sin3 histone deacetylase complex. Mol. Cancer 5 (2006) 26-33
7. Chanvivattana Y., Bishop A., Schubert D., Stock C., Moon Y.H., Sung Z., and Goodrich J. Interaction of Polycomb-group proteins controlling flowering in Arabidopsis. Development 131 (2004) 5263-5276
8. Deal R.B., Topp C.N., McKinney E.C., and Meagher R.B. Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A. Z. Plant Cell 19 (2007) 74-83
9. Fuchs J., Demidov D., Houben A., and Schubert I. Chromosomal histone modification patterns-from conservation to diversity. Trends Plant Sci. 11 (2006) 199-208
10. Goodrich J., Puangsomlee P., Martin M., Long D., Meyerowitz E.M., and Coupland G. A Polycomb-group gene regulates homeotic gene expression in Arabidopsis. Nature 386 (1997) 44-51
11. Grimaud C., Negre N., and Cavalli G. From genetics to epigenetics: the tale of Polycomb group and trithorax group genes. Chromosome Res. 14 (2006) 363-375
12. He Y., and Amasino R.M. Role of chromatin modification in flowering-time control. Trends Plant Sci. 10 (2005) 30-35
13. Jiang D., Yang W., He Y., and Amasino R.M. Arabidopsis relatives of the human lysine-specific demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition. Plant Cell 19 (2007) 2975-2987
14. Kaplan C.D., Laprade L., and Winston F. Transcription elongation factors repress transcription initiation from cryptic sites. Science 301 (2003) 1096-1099
15. Keogh M.C., et al. Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123 (2005) 593-605
16. Kim S.Y., He Y., Jacob Y., Noh Y.S., Michaels S., and Amasino R. Establishment of the vernalization-responsive, winter-annual habit in Arabidopsis requires a putative histone H3 methyltransferase. Plant Cell 17 (2005) 3301-3310
17. Kouzarides T. Chromatin modifications and their function. Cell 128 (2007) 693-705
18. Krichevsky A., Gutgarts H., Kozlovsky S.V., Tzfira T., Sutton A., Sternglanz R., Mandel G., and Citovsky V. C2H2 zinc finger-SET histone methyltransferase is a plant-specific chromatin modifier. Dev. Biol. 303 (2007) 259-269
19. Levy Y.Y., Mesnage S., Mylne J.S., Gendall A.R., and Dean C. Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control. Science 297 (2002) 243-246
20. Liu F., Quesada V., Crevillén P., Bäurle I., Swiezewski S., and Dean C. The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC. Mol. Cell. 28 (2007) 398-407
21. Makarevich G., Leroy O., Akinci U., Schubert D., Clarenz O., Goodrich J., Grossniklaus U., and Kohler C. Different Polycomb group complexes regulate common target genes in Arabidopsis. EMBO Rep. 7 (2006) 947-952
22. March-Díaz R., García-Domínguez M., Florencio F.J., and Reyes J.C. SEF, a new protein required for flowering repression in Arabidopsis, interacts with PIE1 and ARP6. Plant Physiol. 143 (2007) 893-901
23. Michaels S.D., and Amasino R.M. FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering. Plant Cell 11 (1999) 949-956
24. Papp B., and Mueller J. Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins. Genes Dev. 20 (2006) 2041-2054
25. Pien S., and Grossniklaus U. Polycomb group and trithorax group proteins in Arabidopsis. Biophys. Biochem. Acta 1769 (2007) 375-382
26. Pien S., Fleury D., Mylne J.S., Crevillen P., Inzé D., Avramova Z., Dean C., and Grossniklaus U. ARABIDOPSIS TRITHORAX1 dynamically regulates FLOWERING LOCUS C activation via histone 3 lysine 4 trimethylation. Plant Cell 20 (2008) 580-588
27. Reyes J.C. Chromatin modifiers that control plant development. Curr. Opin. Plant Dev. 9 (2006) 21-27
28. Saha A., Wittmeyer J., and Cairns B.R. Chromatin remodeling: the industrial revolution of DNA around histones. Nat. Rev., Mol. Cell Biol. 7 (2006) 437-447
29. Saleh A., Al-Abdallat A., Ndamukong I., Alvarez-Venegas R., and Avramova Z. The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus. Nucleic Acids Res. 35 (2007) 6290-6296
30. Schonrock N., Bouveret R., Leroy O., Borghi L., Köhler C., Gruissem W., and Hennig L. Polycomb-group proteins repress the floral activator AGL19 in the FLC-dependent vernalization pathway. Genes Dev. 20 (2006) 1667-1678
31. Schubert D., Clarenz O., and Goodrich J. Epigenetic control of plant development by Polycomb-group proteins. Curr. Opin. Plant Biol. 8 (2005) 553-561
32. Schubert D., Primavesi L., Bishopp A., Roberts G., Doonan J., Jenuwein T., and Goodrich J. Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27. EMBO J. 25 (2006) 4638-4649
33. Sharov A.A., and Ko M.S. Human ES cell profiling broadens the reach of bivalent domains. Cell Stem Cell 1 (2007) 237-238
34. Sung S., Schmitz R.J., and Amasino R.M. A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis. Genes Dev. 20 (2006) 3244-3248
35. Wood C.C., Robertson M., Tanner G., Peacock W.J., Dennis E.S., and Helliwell C.A. The Arabidopsis thaliana vernalization response requires a polycomb-like protein complex that also includes VERNALIZATION INSENSITIVE 3. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 14631-14636
36. Wysocka J., Swigut T., Xiao H., Milne T.A., Kwon S.Y., Landry J., Kauer M., Tackett A.J., Chait B.T., Badenhorst P., Wu C., and Allis C.D. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodeling. Nature 442 (2006) 86-90
37. Zhang X., Clarenz O., Cokus S., Bernatavichute Y.V., Pellegrini M., Goodrich J., and Jacobsen S.E. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol. 5 5 (2007) e129