Genetic variation of St. Louis encephalitis virus

Journal of General Virology

Volumn 89, Issue 8, 2008, Pages 1901-1910

  May, Fiona J ^a,b   Li, Li ^a,b   Zhang, Shuliu ^a,b   Guzman, Hilda ^a,b   Beasley, David W C ^a,b   Tesh, Robert B ^a,b   Higgs, Stephen ^a,b   Raj, Pushker ^c   Bueno Jr , Rudy ^d   Randle, Yvonne ^d   Chandler, Laura ^e   Barrett, Alan D T ^a,b  

^a UNIVERSITY OF TEXAS MEDICAL BRANCH   (United States)

^b University of Texas Medical Branch School of Medicine   (United States)

^c TEXAS DEPARTMENT OF STATE HEALTH SERVICES   (United States)

^d Harris County Public Health and Environmental Services   (United States)

^e VETERANS AFFAIRS MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; NUCLEOTIDE; VIRUS ENVELOPE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CLADISTICS; CONTROLLED STUDY; GENETIC VARIABILITY; JAMAICA; JAPANESE ENCEPHALITIS VIRUS; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; ST LOUIS FLAVIVIRUS; STRAIN DIFFERENCE; UNITED STATES; VIRAL GENETICS; VIRUS ISOLATION; VIRUS STRAIN; CHEMICAL STRUCTURE; CLASSIFICATION; DNA SEQUENCE; EPIDEMIC ENCEPHALITIS; GENETICS; HUMAN; ISOLATION AND PURIFICATION; PHYLOGENY; VIROLOGY;

JAPANESE ENCEPHALITIS VIRUS; ST. LOUIS ENCEPHALITIS VIRUS;

CALIFORNIA; ENCEPHALITIS VIRUS, ST. LOUIS; ENCEPHALITIS, ST. LOUIS; HUMANS; JAMAICA; MODELS, MOLECULAR; PHYLOGENY; SEQUENCE ANALYSIS, DNA; TEXAS; VARIATION (GENETICS); VIRAL ENVELOPE PROTEINS;

EID: 50549094569     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.2008/000190-0     Document Type: Article

References (58)

1. Adams, S. C., Broom, A. K., Sammels, L. M., Hartnett, A. C., Howard, M. J., Coelen, R. J., Mackenzie, J. S. & Hall, R. A. (1995). Glycosylation and antigenic variation among Kunjin virus isolates. Virology 206, 49-56.
2. Bailey, C. L., Eldridge, B. F., Hayes, D. E., Watts, D. M., Tammariello, R. F. & Dalrymple, J. M. (1978). Isolation of St Louis encephalitis virus from overwintering Culex pipiens mosquitoes. Science 199, 1346-1349.
3. Ballinger-Crabtree, M. E. & Miller, B. R. (1990). Partial nucleotide sequence of South American yellow fever virus strain 1899/81: structural proteins and NS1. J Gen Virol 71, 2115-2121.
4. Beasley, D. W., Li, L., Suderman, M. T. & Barrett A. D. (2002). Mouse neuroinvasive phenotype of West Nile virus strains varies depending upon virus genotype. Virology 296, 17-23.
5. Berthet F. X., Zeller, H. G., Drouet, M. T., Rauzier, J., Digoutte, J. P. & Deubel, V. (1997). Extensive nucleotide changes and deletions within the envelope glycoprotein gene of Euro-African West Nile viruses. J Gen Virol 78, 2293-2297.
6. Carey, D. E., Reuben, R. & Myers, R. M. (1968a). Japanese encephalitis studies in Vellore, South India. I. Virus isolation from mosquitoes. Indian J Med Res 56, 1309-1318.
7. Carey, D. E., Rodrigues, F. M., Myers, R. M. & Webb, J. K. (1968b). Arthropod-borne viral infections in children in Vellore, South India, with particular reference to dengue and West Nile viruses. Indian Pediatr 5, 285-296.
8. Chandler, L. J., Parsons, R. & Randle, Y. (2001). Multiple genotypes of St. Louis encephalitis virus (Flaviviridae: Flavivirus) circulate in Harris County, Texas. Am J Trop Med Hyg 64, 12-19.
9. Charrel, R. N., Brault, A. C., Gailian, P., Lemasson, J. J., Murgue, B., Murri, S., Pastorino, B., Zeller, H., de Chesse, R. & other authors (2003). Evolutionary relationship between Old World West Nile virus strains. Evidence for viral gene flow between Africa, the Middle East, and Europe. Virology 315, 381-388.
10. Ciota, A. T., Lovelace, A. O., Ngo, K. A., Le, A. N., Maffei, J. G., Franke, M. A., Payne, A. F., Jones, S. A., Kauffman, E. B. & Kramer, L. D. (2007). Cell-specific adaptation of two flaviviruses following serial passage in mosquito cell culture. Virology 357, 165-174.
11. Davis, C. T., Galbraith, S. E., Zhang, S., Whiteman, M. C., Li, L., Kinney, R. M. & Barrett, A. D. (2007a). A combination of naturally occurring mutations in North American West Nile virus nonstructural protein genes and in the 3′ untranslated region alters virus phenotype. J Virol 81, 6111-6116.
12. Davis, C. T., Li, L., May, F. J., Bueno, R., Jr, Dennett, J. A., Bala, A. A., Guzman, H., Quiroga-Elizondo, D., Tesh, R. B. & BarreMtt, A. D. (2007b). Genetic stasis of dominant West Nile virus genotype, Houston, Texas. Emerg Infect Dis 13, 601-604.
13. Day, J. F. (2001). Predicting St. Louis encephalitis virus epidemics: lessons from recent, and not so recent, outbreaks. Annu Rev Entomol 46, 111-138.
14. Day, J. F. & Stark, L. M. (1999). Avian serology in a St. Louis encephalitis epicenter before, during, and after a widespread epidemic in south Florida, USA. J Med Entomol 36, 614-624.
15. Diaz, L. A., Re, V., Almiron, W. R., Farias, A., Vázquez, A., Sanchez-Seco, M. P., Aguilar, J., Spinsanti, L., Konigheim, B. & other authors (2006). Genotype III Saint Louis encephalitis virus outbreak, Argentina, 2005. Emerg Infect Dis 12, 1752-1754.
16. Fang, Y. & Reisen, W. K. (2006). Previous infection with West Nile or St. Louis encephalitis viruses provides cross protection during reinfection in house finches. Am J Trop Med Hyg 75, 480-485.
17. Felsenstein, J. (1989). PHYLIP - phylogeny inference package (version 3.2). Cladistics 5, 164-166.
18. Francy, D. B., Rush, W. A., Montoya, M., Inglish, D. S. & Bolin, R. A. (1981). Transovarial transmission of St. Louis encephalitis virus by Culex pipiens complex mosquitoes. Am J Trop Med Hyg 30, 699-705.
19. Gould, E. A., de Lamballerie, X., Zanotto, P. M. & Holmes, E. C. (2003). Origins, evolution, and vector/host coadaptations within the genus Flavivirus. Adv Virus Res 59, 277-314.
20. Hall, R. A., Broom, A. K. Smith, D. W. & Mackenzie, J. S. (2002). The ecology and epidemiology of Kunjin virus. Curr Top Microbiol Immunol 267, 253-269.
21. Halstead, S. B. & Jacobson, J. (2003). Japanese encephalitis. Adv Virus Res 61, 103-138.
22. Hardy, J. L., Rosen, L., Kramer, L. D., Presser, S. B., Shroyer, D. A. & Turell, M. J. (1980). Effect of rearing temperature on transovarial transmission of St. Louis encephalitis virus in mosquitoes. Am J Trop Med Hyg 29, 963-968.
23. Hardy, J. L., Rosen, L., Reeves, W. C., Scrivani, R. P. & Presser, S. B. (1984). Experimental transovarial transmission of St. Louis encephalitis virus by Culex and Aedes mosquitoes. Am J Trop Med Hyg 33, 166-175.
24. Holmes, E. C. (2003). Patterns of intra- and interhost nonsynonymous variation reveal strong purifying selection in dengue virus. J Virol 77, 11296-11298.
25. Jerzak, G., Bernard, K. A., Kramer, L. D. & Ebel, G. D. (2005). Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selection. J Gen Virol 86, 2175-2183.
26. Johansen, C. A., van den Hurk, A. F., Ritchie, S. A., Zborowski, P., Nisbet, D. J., Paru, R., Bockarie, M. J., Macdonald, J., Drew, A. C. & other authors (2000). Isolation of Japanese encephalitis virus from mosquitoes (Diptera: Cuhcidae) collected in the Western Province of Papua New Guinea, 1997-1998. Am J Trop Med Hyg 62, 631-638.
27. Johansen, C. A., Susai, V., Hall, R. A., Mackenzie, J. S., Clark D. C., May, F. J., Hemmerter, S., Smith, D. W. & Broom, A. K. (2007). Genetic and phenotypic differences between isolates of Murray Valley encephalitis virus in Western Australia, 1972-2003. Virus Genes 35, 147-154.
28. Kay, B. H., Fanning, I. D. & Carley, J. G. (1984). The vector competence of Australian Culex annulirostris with Murray Valley encephalitis and Kunjin viruses. Aust J Exp Biol Med Sci 62, 641-650.
29. Kramer, L. D. & Chandler, L. J. (2001). Phylogenetic analysis of the envelope gene of St. Louis encephalitis virus. Arch Virol 146, 2341-2355.
30. Kramer, L. D., Presser, S. B., Hardy, J. L. & Jackson, A. O. (1997). Genotypic and phenotypic variation of selected Saint Louis encephalitis viral strains isolated in California. Am J Trop Med Hyg 57, 222-229.
31. Lanciotti, R. S., Roehrig, J. T., Deubel, V., Smith, J., Parker, M., Steele, K., Crise, B., Volpe, K. E., Crabtree, M. B. & other authors (1999). Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States. Science 286, 2333-2337.
32. Lanciotti, R. S., Ebel, G. D., Deubel, V., Kerst, A. J., Murri, S, Meyer, R., Bowen, M., McKinney, N., Morrill, W. E. & other authors (2002). Complete genome sequences and phylogenetic analysis of West Nile virus strains isolated from the United States, Europe, and the Middle East. Virology 298, 96-105.
33. Lillibridge, K. M., Parsons, R., Randle, Y., Travassos da Rosa, A. P., Guzman,, H., Siirin, M., Wuithiranyagool, T., Hailey, C, Higgs, S. & other authors (2004). The 2002 introduction of West Nile virus into Harris County, Texas, an area historically endemic for St. Louis encephalitis. Am J Trop Med Hyg 70, 676-681.
34. Lobigs, M., Marshall, I. D., Weir, R. C. & Dalgarno, L. (1988). Murray Valley encephalitis virus field strains from Australia and Papua New Guinea: studies on the sequence of the major envelope protein gene and virulence for mice. Virology 165, 245-255.
35. Luby, J. P., Miller, G., Gardner, P., Pigford, C. A, Henderson, B. E. & Eddins, D. (1967). The epidemiology of St. Louis encephalitis in Houston, Texas, 1964. Am J Epidemiol 86, 584-597.
36. Martin, D. P., Williamson, C. & Posada, D. (2005). RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21, 260-262.
37. May, F. J., Lobigs, M., Lee, E., Gendle, D. J., Mackenzie, J. S., Broom, A. K. Conlan, J. V. & Hall, R. A. (2006). Biological, antigenic and phylogenetic characterization of the flavivirus Alfuy. J Gen Virol 87, 329-337.
38. Nayar, J. K., Rosen, L. & Knight J. W. (1986). Experimental vertical transmission of Saint Louis encephalitis virus by Florida mosquitoes. Am J Trop Med Hyg 35, 1296-1301.
39. Reeves, W. C., Bellamy, R. E. & Scrivani, R. P. (1958). Relationships of mosquito vectors to winter survival of encephalitis viruses. I. Under natural conditions. Am J Hyg 67, 78-89.
40. Reisen, W. K. (2003). Epidemiology of St. Louis encephalitis virus. Adv Virus Res 61, 139-183.
41. Reisen, W. K., Lothrop, H. D., Chiles, R. E., Cusack R., Green, E. G., Fang, Y. & Kensington, M. (2002). Persistence and amplification of St. Louis encephalitis virus in the Coachella Valley of California, 2000-2001. J Med Entomol 39, 793-805.
42. Santos, C. L., Sallum, M. A., Franco, H. M., Oshiro, F. M. & Rocco, I. M. (2006). Genetic characterization of St. Louis encephalitis virus isolated from human in Sao Paulo, Brazil. Mem Inst Oswaldo Cruz 101, 57-63.
43. Savage, H. M., Ceianu, C., Nicolescu, G., Karabatsos, N., Lanciotti, R., Vladimirescu, A., Laiv, L., Ungureanu, A., Romanca, C. & Tsai, T. F. (1999). Entomologic and avian investigations of an epidemic of West Nile fever in Romania in 1996, with serologic and molecular characterization of a virus isolate from mosquitoes. Am J Trop Med Hyg 61, 600-611.
44. Scherret, J. H., Poidinger, M., Mackenzie, J. S., Broom, A. K., Deubel, V., Lipkin, W. I., Briese, T., Gould, E. A. & Hall, R. A. (2001). The relationships between West Nile and Kunjin viruses. Emerg Infect Dis 7, 697-705.
45. Schlesinger, J. J., Brandriss, M. W. & Monath, T. P. (1983). Monoclonal antibodies distinguish between wild and vaccine strains of yellow fever virus by neutralization, hemagglutination inhibition, and immune precipitation of the virus envelope protein. Virology 125, 8-17.
46. Thiel, H. J., Collett, M. S., Gould, E. A., Heinz, F. X., Meyers, G., Purcell, R. H., Rice, C. M. & Houghton, M. (2005). Flaviviridae. In Virus Taxonomy, Eighth Report of the International Committee for the Taxonomy of Viruses, pp. 981-998. Edited by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. San Diego: Academic Press.
47. Trent D. W., Monath, T. P., Bowen, G. S., Vorndam, A. V., Cropp, C. B. & Kemp, G. E. (1980). Variation among strains of St. Louis encephalitis virus: basis for a genetic, pathogenetic, and epidemiologic classification. Ann N Y Acad Sci 354, 219-237.
48. Trent, D. W., Kinney, R. M., Johnson, B. J., Vorndam, A. V., Grant J. A., Deubel, V., Rice, C. M. & Hahn, C. (1987). Partial nucleotide sequence of St. Louis encephalitis virus RNA: structural proteins, NS1, ns2a, and ns2b. Virology 156, 293-304.
49. Tsai, T. F., Canfield, M. A., Reed, C. M., Flannery, V. L., Sullivan, K. H., Reeve, G. R., Bailey, R. E. & Poland, J. D. (1988). Epidemiological aspects of a St. Louis encephalitis outbreak in Harris County, Texas, 1986. J Infect Dis 157, 351-356.
50. Twiddy, S. S. & Holmes, E. C. (2003). The extent of homologous recombination in members of the genus Flavivirus. J Gen Virol 84, 429-440.
51. Uchil, P. D. & Satchidanandam, V. (2001). Phylogenetic analysis of Japanese encephalitis virus: envelope gene based analysis reveals a fifth genotype, geographic clustering, and multiple introductions of the virus into the Indian subcontinent. Am J Trop Med Hyg 65, 242-251.
52. Vorndam, V., Mathews, J. H., Barrett A. D., Roehrig, J. T. & Trent D. W. (1993). Molecular and biological characterization of a non-glycosylated isolate of St Louis encephalitis virus. J Gen Virol 74, 2653-2660.
53. Weaver, S. C. (2006). Evolutionary influences in arboviral disease. Curr Top Microbiol Immunol 299, 285-314.
54. Weaver, S. C. & Barrett A. D. (2004). Transmission cycles, host range, evolution and emergence of arboviral disease. Nat Rev Microbiol 2, 789-801.
55. Wangler, G., Castle, E., Leidner, U. & Nowak T. (1985). Sequence analysis of the membrane protein V3 of the flavivirus West Nile virus and of its gene. Virology 147, 264-274.
56. Woelk, C. H. & Holmes, E. C. (2002). Reduced positive selection in vector-borne RNA viruses. Mol Biol Evol 19, 2333-2336.
57. Wright, P. J. (1982). Envelope protein of the flavivirus Kunjin is apparently not glycosylated. J Gen Virol 59, 29-38.
58. Yamanaka, T., Tsujimura, K., Kondo, T., Yasuda, W., Okada, A., Noda, K., Okumura, T. & Matsumura, T. (2006). Isolation and genetic analysis of Japanese encephalitis virus from a diseased horse in Japan. J Vet Med Sci 68, 293-295.