-
1
-
-
0031663369
-
The green fluorescent protein
-
Tsien, R. Y. 1998. The green fluorescent protein. Annu. Rev. Biochem. 67:509-544.
-
(1998)
Annu. Rev. Biochem
, vol.67
, pp. 509-544
-
-
Tsien, R.Y.1
-
2
-
-
0033065308
-
Shedding light on the dark and weakly fluorescent states of green fluorescent proteins
-
Weber, W., V. Helms, J. A. McCammon, and P. W. Langhoff. 1999. Shedding light on the dark and weakly fluorescent states of green fluorescent proteins. Proc. Natl. Acad. Sci. USA. 96:6177-6182.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6177-6182
-
-
Weber, W.1
Helms, V.2
McCammon, J.A.3
Langhoff, P.W.4
-
3
-
-
23844488007
-
Excited-state structure determination of the green fluorescent protein chromophore
-
Usman, A., O. F. Mohammed, E. T. Nibbering, J. Dong, K. M. Solntsev, and L. M. Tolbert. 2005. Excited-state structure determination of the green fluorescent protein chromophore. J. Am. Chem. Soc. 127:11214-11215.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 11214-11215
-
-
Usman, A.1
Mohammed, O.F.2
Nibbering, E.T.3
Dong, J.4
Solntsev, K.M.5
Tolbert, L.M.6
-
4
-
-
24944498464
-
Structural events in the photocycle of green fluorescent protein
-
van Thor, J. J., G. Zanetti, K. Ronayne, and M. Towrie. 2005. Structural events in the photocycle of green fluorescent protein. J. Phys. Chem. B. 109:16099-16108.
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 16099-16108
-
-
van Thor, J.J.1
Zanetti, G.2
Ronayne, K.3
Towrie, M.4
-
5
-
-
25844509913
-
Ultrafast and low barrier motions in the photoreactions of the green fluorescent protein
-
van Thor, J. J., G. Y. Georgiev, M. Towrie, and J. T. Sage. 2005. Ultrafast and low barrier motions in the photoreactions of the green fluorescent protein. J. Biol. Chem. 280:33652-33659.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 33652-33659
-
-
van Thor, J.J.1
Georgiev, G.Y.2
Towrie, M.3
Sage, J.T.4
-
6
-
-
14844302645
-
Observation of excited-state proton transfer in green fluorescent protein using ultrafast vibrational spectroscopy
-
Stoner-Ma, D., A. A. Jaye, P. Matousek, M. Towrie, S. R. Meech, and P. J. Tonge. 2005. Observation of excited-state proton transfer in green fluorescent protein using ultrafast vibrational spectroscopy. J. Am. Chem. Soc. 127:2864-2865.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 2864-2865
-
-
Stoner-Ma, D.1
Jaye, A.A.2
Matousek, P.3
Towrie, M.4
Meech, S.R.5
Tonge, P.J.6
-
7
-
-
33751300213
-
Proton relay reaction in green fluorescent protein (GFP): Polarization-resolved ultrafast vibrational spectroscopy of isotopically edited GFP
-
Stoner-Ma, D., E. H. Melief, J. Nappa, K. L. Ronayne, P. J. Tonge, and S. R. Meech. 2006. Proton relay reaction in green fluorescent protein (GFP): polarization-resolved ultrafast vibrational spectroscopy of isotopically edited GFP. J. Phys. Chem. B. 110:22009-22018.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 22009-22018
-
-
Stoner-Ma, D.1
Melief, E.H.2
Nappa, J.3
Ronayne, K.L.4
Tonge, P.J.5
Meech, S.R.6
-
8
-
-
0029757121
-
Ultrafast excited state dynamics in green fluorescent protein: Multiple states and proton transfer
-
Chattoraj, M., B. A. King, G. U. Bublitz, and S. G. Boxer. 1996. Ultrafast excited state dynamics in green fluorescent protein: multiple states and proton transfer. Proc. Natl. Acad. Sci. USA. 93:8362-8367.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8362-8367
-
-
Chattoraj, M.1
King, B.A.2
Bublitz, G.U.3
Boxer, S.G.4
-
9
-
-
33745075006
-
Charge transfer in green fluorescent protein
-
van Thor, J. J., and J. T. Sage. 2006. Charge transfer in green fluorescent protein. Photochem. Photobiol. Sci. 5:597-602.
-
(2006)
Photochem. Photobiol. Sci
, vol.5
, pp. 597-602
-
-
van Thor, J.J.1
Sage, J.T.2
-
10
-
-
11144239424
-
Uncovering the hidden ground state of green fluorescent protein
-
Kennis, J. T., D. S. Larsen, I. H. van Stokkum, M. Vengris, J. J. van Thor, and R. van Grondelle. 2004. Uncovering the hidden ground state of green fluorescent protein. Proc. Natl. Acad. Sci. USA. 101:17988-17993.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 17988-17993
-
-
Kennis, J.T.1
Larsen, D.S.2
van Stokkum, I.H.3
Vengris, M.4
van Thor, J.J.5
van Grondelle, R.6
-
11
-
-
0029647452
-
Binding of CO to myoglobin from a heme pocket docking site to form nearly linear Fe-C-O
-
Lim, M., T. A. Jackson, and P. A. Anfinrud. 1995. Binding of CO to myoglobin from a heme pocket docking site to form nearly linear Fe-C-O. Science. 269:962-966.
-
(1995)
Science
, vol.269
, pp. 962-966
-
-
Lim, M.1
Jackson, T.A.2
Anfinrud, P.A.3
-
12
-
-
0037142658
-
The orientation of CO in heme proteins determined by time-resolved mid-IR spectroscopy: Anisotropy correction for finite photolysis of an optically thick sample
-
Lim, M. 2002. The orientation of CO in heme proteins determined by time-resolved mid-IR spectroscopy: anisotropy correction for finite photolysis of an optically thick sample. Bull. Korean Chem. Soc. 23:865-871.
-
(2002)
Bull. Korean Chem. Soc
, vol.23
, pp. 865-871
-
-
Lim, M.1
-
13
-
-
0001397162
-
Discordant results on FeCO deformability in heme proteins reconciled by density functional theory
-
Spiro, T. G., and P. M. Kozlovski. 1998. Discordant results on FeCO deformability in heme proteins reconciled by density functional theory. J. Am. Chem. Soc. 120:4524-4525.
-
(1998)
J. Am. Chem. Soc
, vol.120
, pp. 4524-4525
-
-
Spiro, T.G.1
Kozlovski, P.M.2
-
14
-
-
0035913380
-
Vibrational spectroscopy and mode assignments for an analog of the green fluorescent protein chromophore
-
Esposito, A. P., P. Schellenberg, W. W. Parson, and P. J. Reid. 2001. Vibrational spectroscopy and mode assignments for an analog of the green fluorescent protein chromophore. J. Mol. Struct. 569:25-41.
-
(2001)
J. Mol. Struct
, vol.569
, pp. 25-41
-
-
Esposito, A.P.1
Schellenberg, P.2
Parson, W.W.3
Reid, P.J.4
-
15
-
-
0037072002
-
Isotopic labeling and normal-mode analysis of a model green fluorescent protein chromophore
-
He, X., A. F. Bell, and P. J. Tonge. 2002. Isotopic labeling and normal-mode analysis of a model green fluorescent protein chromophore. J. Phys. Chem. B. 106:6056-6066.
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 6056-6066
-
-
He, X.1
Bell, A.F.2
Tonge, P.J.3
-
16
-
-
0012808406
-
Development of a broadband picosecond infrared spectrometer and its incorporation into an existing ultrafast time-resolved resonance Raman, UV/visible, and fluorescence spectroscopic apparatus
-
Towrie M., D. C. Grills, J. Dyer, J. A. Weinstein, P. Matousek, R. Barton, P. D. Bailey, N. Subramaniam, W. M. Kwok, C. Ma, D. Phillips, A. W. Parker, and M. W. George. 2003. Development of a broadband picosecond infrared spectrometer and its incorporation into an existing ultrafast time-resolved resonance Raman, UV/visible, and fluorescence spectroscopic apparatus. Appl. Spectrosc. 57:367-380.
-
(2003)
Appl. Spectrosc
, vol.57
, pp. 367-380
-
-
Towrie, M.1
Grills, D.C.2
Dyer, J.3
Weinstein, J.A.4
Matousek, P.5
Barton, R.6
Bailey, P.D.7
Subramaniam, N.8
Kwok, W.M.9
Ma, C.10
Phillips, D.11
Parker, A.W.12
George, M.W.13
-
17
-
-
0027207780
-
Theory of photoselection by intense light pulses. Influence of reorientational dynamics and chemical kinetics on absorbance measurements
-
Ansari, A., and A. Szabo. 1993. Theory of photoselection by intense light pulses. Influence of reorientational dynamics and chemical kinetics on absorbance measurements. Biophys. J. 64:838-851.
-
(1993)
Biophys. J
, vol.64
, pp. 838-851
-
-
Ansari, A.1
Szabo, A.2
-
18
-
-
85031364739
-
-
Frisch, M. J, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. A. Montgomery Jr, T. Vreven, K. N. Kudin, J. C. Burant, J. M. Millam, S. S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G. A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J. E. Knox, H. P. Hratchian, J. B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, P. Y. Ayala, K. Morokuma, G. A. Voth, P. Salvador, J. J. Dannenberg, V. G. Zakrzewski, S. Dapprich, A. D. Daniels, M. C. Strain, O. Farkas, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. V. Ortiz, Q. Cui, A. G. Baboul, S. Clifford, J. Cioslowski, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, M. Challacombe, P. M
-
Frisch, M. J., G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. A. Montgomery Jr., T. Vreven, K. N. Kudin, J. C. Burant, J. M. Millam, S. S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G. A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J. E. Knox, H. P. Hratchian, J. B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, P. Y. Ayala, K. Morokuma, G. A. Voth, P. Salvador, J. J. Dannenberg, V. G. Zakrzewski, S. Dapprich, A. D. Daniels, M. C. Strain, O. Farkas, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. V. Ortiz, Q. Cui, A. G. Baboul, S. Clifford, J. Cioslowski, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, M. Challacombe, P. M. W. Gill, B. Johnson, W. Chen, M. W. Wong, C. Gonzalez, and J. A. Pople. 2004. Gaussian 03, Revision C.02. Gaussian, Wallingford, CT.
-
-
-
-
19
-
-
0036880493
-
What vibrations tell us about proteins
-
Barth, A., and C. Zscherp. 2002. What vibrations tell us about proteins. Q. Rev. Biophys. 35:369-430.
-
(2002)
Q. Rev. Biophys
, vol.35
, pp. 369-430
-
-
Barth, A.1
Zscherp, C.2
-
20
-
-
0035822210
-
Resonance Raman scattering by the green fluorescent protein and an analogue of its chromophore
-
Schellenberg, P., E. Johnson, A. P. Esposito, P. J. Reid, and W. W. Parson. 2001. Resonance Raman scattering by the green fluorescent protein and an analogue of its chromophore. J. Phys. Chem. B. 105:5316-5322.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 5316-5322
-
-
Schellenberg, P.1
Johnson, E.2
Esposito, A.P.3
Reid, P.J.4
Parson, W.W.5
-
21
-
-
33748386052
-
Correlation between the vibrational frequencies of the carboxylate group and the types of its coordination to a metal ion: An ab initio molecular orbital study
-
Nara, M., H. Torii, and M. Tasumi. 1996. Correlation between the vibrational frequencies of the carboxylate group and the types of its coordination to a metal ion: an ab initio molecular orbital study. J. Phys. Chem. 100:19812-19817.
-
(1996)
J. Phys. Chem
, vol.100
, pp. 19812-19817
-
-
Nara, M.1
Torii, H.2
Tasumi, M.3
-
23
-
-
33645460315
-
Potential energy landscape of the photoinduced multiple proton-transfer process in the green fluorescent protein: Classical molecular dynamics and multiconfigurational electronic structure calculations
-
Vendrell, O., R. Gelabert, M. Moreno, and J. M. Lluch. 2006. Potential energy landscape of the photoinduced multiple proton-transfer process in the green fluorescent protein: classical molecular dynamics and multiconfigurational electronic structure calculations. J. Am. Chem. Soc. 128:3564-3574.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 3564-3574
-
-
Vendrell, O.1
Gelabert, R.2
Moreno, M.3
Lluch, J.M.4
-
24
-
-
33645515454
-
Mechanistic aspects of proton chain transfer: A computational study for the green fluorescent protein chromophore
-
Wang, S., and S. C. Smith. 2006. Mechanistic aspects of proton chain transfer: a computational study for the green fluorescent protein chromophore. J, Phys. Chem. B. 110:5084-5093.
-
(2006)
J, Phys. Chem. B
, vol.110
, pp. 5084-5093
-
-
Wang, S.1
Smith, S.C.2
-
25
-
-
14844284623
-
A concerted mechanism of proton transfer in green fluorescent protein. A theoretical study
-
Zhang, R., M. T. Nguyn, and A. Ceuleman. 2005. A concerted mechanism of proton transfer in green fluorescent protein. A theoretical study. Chem. Phys. Lett. 404:250-256.
-
(2005)
Chem. Phys. Lett
, vol.404
, pp. 250-256
-
-
Zhang, R.1
Nguyn, M.T.2
Ceuleman, A.3
-
26
-
-
0037022637
-
Proton shuttle in green fluorescent protein studied by dynamic simulations
-
Lill, M. A., and V. Helms. 2002. Proton shuttle in green fluorescent protein studied by dynamic simulations. Proc. Natl. Acad. Sci. USA. 99:2778-2781.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 2778-2781
-
-
Lill, M.A.1
Helms, V.2
-
27
-
-
22144472527
-
Proton pathways in green fluorescence protein
-
Agmon, N. 2005. Proton pathways in green fluorescence protein. Biophys. J. 88:2452-2461.
-
(2005)
Biophys. J
, vol.88
, pp. 2452-2461
-
-
Agmon, N.1
-
28
-
-
34547423998
-
Kinetics of switchable proton escape from a proton-wire within green fluorescence protein
-
Agmon, N. 2007. Kinetics of switchable proton escape from a proton-wire within green fluorescence protein. J. Phys. Chem. B. 111:7870-7878.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 7870-7878
-
-
Agmon, N.1
-
29
-
-
0037435610
-
Polarized absorption spectra of green fluorescent protein single crystals: Transition dipole moment directions
-
Rosell, F. I., and S. G. Boxer. 2003. Polarized absorption spectra of green fluorescent protein single crystals: transition dipole moment directions. Biochemistry. 42:177-183.
-
(2003)
Biochemistry
, vol.42
, pp. 177-183
-
-
Rosell, F.I.1
Boxer, S.G.2
-
30
-
-
37249047410
-
Anomalous negative fluorescence anisotropy in yellow fluorescent protein (YFP 10C): Quantitative analysis of FRET in YFP dimers
-
Shi, X., J. Basran, H. E. Seward, W. Childs, C. R. Bagshaw, and S. G. Boxer. 2007. Anomalous negative fluorescence anisotropy in yellow fluorescent protein (YFP 10C): quantitative analysis of FRET in YFP dimers. Biochemistry. 46:14403-14417.
-
(2007)
Biochemistry
, vol.46
, pp. 14403-14417
-
-
Shi, X.1
Basran, J.2
Seward, H.E.3
Childs, W.4
Bagshaw, C.R.5
Boxer, S.G.6
-
31
-
-
32244434435
-
Probing the decay coordinate of the green fluorescent protein: Arrest of cis-trans isomerization by the protein significantly narrows the fluorescence spectra
-
Stavrov, S. S., K. M. Solntsev, L. M. Tolbert, and D. Huppert. 2006. Probing the decay coordinate of the green fluorescent protein: arrest of cis-trans isomerization by the protein significantly narrows the fluorescence spectra. J. Am. Chem. Soc. 128:1540-1546.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 1540-1546
-
-
Stavrov, S.S.1
Solntsev, K.M.2
Tolbert, L.M.3
Huppert, D.4
|