Probability distributions for polymer translocation

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 78, Issue 2, 2008, Pages

  Chatelain, Clément ^a,b   Kantor, Yacov ^c   Kardar, Mehran ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITÉ PARIS SACLAY   (France)

^c TEL AVIV UNIVERSITY   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

POLYMERS; PROBABILITY; RANDOM PROCESSES; RISK ASSESSMENT;

GAUSSIAN; MEMBRANE PORES; POLYMER LENGTHS; POLYMER TRANSLOCATION; TRANSLOCATION TIME; TWO DIMENSIONS;

PROBABILITY DISTRIBUTIONS;

EID: 50249187742     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.78.021129     Document Type: Article

References (45)

1. J. J. Kasianowicz, E. Brandin, D. Branton, and D. W. Deamer, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.93.24.13770 93, 13770 (1996).
2. M. Akeson, D. Branton, J. J. Kasianowicz, E. Brandin, and D. W. Deamer, Biophys. J. BIOJAU 0006-3495 77, 3227 (1999).
3. A. Meller, L. Nivon, E. Brandin, J. Golovchenko, and D. Branton, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.97.3.1079 97, 1079 (2000);
4. A. Meller and D. Branton, Electrophoresis ELCTDN 0173-0835 10.1002/1522-2683(200208)23:16<2583::AID-ELPS2583>3.0.CO;2-H 23, 2583 (2002);
5. A. Meller, L. Nivon, and D. Branton, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.86.3435 86, 3435 (2001).
6. B. Albert, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell (Garland, New York, 1994).
7. A. Meller, J. Phys.: Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/15/17/202 15, R581 (2003).
8. J. Mathe, A. Aksimentiev, D. R. Nelson, K. Schulten, and A. Meller, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.0502947102 102, 12377 (2005);
9. A. Aksimentiev, J. B. Heng, G. Timp, and K. Schulten, Biophys. J. BIOJAU 0006-3495 10.1529/biophysj.104.042960 87, 2086 (2004).
10. M. Muthukumar, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.480386 111, 10371 (1999).
11. D. K. Lubensky and D. R. Nelson, Biophys. J. BIOJAU 0006-3495 77, 1824 (1999).
12. W. Sung and P. J. Park, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.77.783 77, 783 (1996);
13. P. J. Park and W. Sung, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.475688 108, 3013 (1998).
14. Sh.-Sh. Chern, A. E. Cárdenas, and R. D. Coalson, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1392367 115, 7772 (2001).
15. P.-G. de Gennes, Scaling Concepts in Polymer Physics (Cornell University Press, Ithaca, NY, 1979).
16. M. Doi and S. F. Edwards, The Theory of Polymer Dynamics (Clarendon Press, Oxford, 1986).
17. J. Chuang, Y. Kantor, and M. Kardar, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.65.011802 65, 011802 (2001);
18. Y. Kantor and M. Kardar, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.69.021806 69, 021806 (2004).
19. K. Kremer and K. Binder, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.447549 81, 6381 (1984);
20. G. S. Grest and K. Kremer, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.33.3628 33, 3628 (1986).
21. Y. Kantor and M. Kardar, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.76.061121 76, 061121 (2007).
22. A. J. Storm, C. Storm, J. Chen, H. Zandbergen, J. F. Joanny, and C. Dekker, Nano Lett. NALEFD 1530-6984 10.1021/nl048030d 5, 1193 (2005).
23. P. Tian and G. D. Smith, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1621614 119, 11475 (2003).
24. A. Yu. Grosberg, S. Nechaev, M. Tamm, and O. Vasilyev, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.96.228105 96, 228105 (2006).
25. T. Sakaue, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.76.021803 76, 021803 (2007).
26. K. Luo, I. Huopaniemi, T. Ala-Nissila, and S.-Ch. Ying, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2179792 124, 114704 (2006);
27. K. Luo, T. Ala-Nissila, and S.-Ch. Ying, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2161189 124, 034714 (2006);
28. I. Huopaniemi, K. Luo, T. Ala-Nissila, and S.-Ch. Ying, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2357118 125, 124901 (2006);
29. I. Huopaniemi, K. Luo, T. Ala-Nissila, and S.-Ch. Ying, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.75.061912 75, 061912 (2007).
30. J. K. Wolterink, G. T. Barkema, and D. Panja, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.96.208301 96, 208301 (2006);
31. D. Panja, G. T. Barkema, and R. C. Ball, e-print arXiv:cond-mat/0610671;
32. D. Panja, G. T. Barkema, and R. C. Ball, J. Phys.: Condens. Matter JCOMEL 0953-8984 10.1088/0953-8984/19/43/432202 19, 432202 (2007).
33. J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. A. Vilgis, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.76.010801 76, 010801 (R) (2007).
34. K. Luo, T. Ala-Nissila, S.-Ch. Ying, P. Pomorski, and M. Kattunen, e-print arXiv:0709.4615.
35. R. Metzler and J. Klafter, Phys. Rep. PRPLCM 0370-1573 10.1016/S0370-1573(00)00070-3 339, 1 (2000);
36. R. Metzler and J. Klafter, J. Phys. A JPHAC5 0305-4470 10.1088/0305-4470/37/31/R01 37, R161 (2004).
37. S. B. Yuste and K. Lindenberg, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.69.033101 69, 033101 (2004);
38. M. Gitterman, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.62.6065 62, 6065 (2000);
39. M. Gitterman, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.69.033102 69, 033102 (2004).
40. R. C. Lua and A. Y. Grosberg, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.72.061918 72, 061918 (2005).
41. I. Carmesin and K. Kremer, Macromolecules MAMOBX 0024-9297 10.1021/ma00187a030 21, 2819 (1988).
42. Y. Kantor, M. Kardar, and D. R. Nelson, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.57.791 57, 791 (1986);
43. Y. Kantor, M. Kardar, and D. R. Nelson, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.35.3056 35, 3056 (1987).
44. A. Zoia, A. Rosso, and M. Kardar, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.76.021116 76, 021116 (2007).
45. S. Nechaev, G. O. Oshanin, and A. Blumen, J. Stat. Phys. JSTPBS 0022-4715 10.1023/A:1018631007164 98, 281 (2000).