First passage times and asymmetry of DNA translocation

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 72, Issue 6, 2005, Pages

  Lua, Rhonald C ^a   Grosberg, Alexander Y ^a  

^a University of Minnesota   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BOUNDARY LAYER FLOW; BROWNIAN MOVEMENT; DIFFUSION;

CLASSICAL DIFFUSION; MEAN-SQUARE DISPLACEMENT; SHORT HAIRPIN LOOP; SINGLE-STRANDED DNA;

DNA;

DNA;

CELL MEMBRANE; CHEMICAL MODEL; CHEMISTRY; COMPUTER SIMULATION; CONFORMATION; MOTION; POROSITY; STATISTICAL MODEL;

CELL MEMBRANE; COMPUTER SIMULATION; DNA; MODELS, CHEMICAL; MODELS, STATISTICAL; MOTION; NUCLEIC ACID CONFORMATION; POROSITY;

EID: 33244487421     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.72.061918     Document Type: Article

References (27)

1. J. J. Kasianowicz, E. Brandin, D. Branton, and D. W. Deamer, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.93.24.13770 93, 13770 (1996).
2. M. Akeson, D. Branton, J. J. Kasianowicz, E. Brandin, and D. W. Deamer, Biophys. J. BIOJAU 0006-3495 77, 3227 (1999).
3. A. Meller, L. Nivon, E. Brandin, J. Golovchenko, and D. Branton, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.97.3.1079 97, 1079 (2000).
4. A. Meller and D. Branton, Electrophoresis ELCTDN 0173-0835 10.1002/1522-2683(200208)23:16<2583::AID-ELPS2583>3.0.CO;2-H 23, 2583 (2002).
5. A. Meller, L. Nivon, and D. Branton, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.86.3435 86, 3435 (2001).
6. J. L. Li, M. Gershow, D. Stein, E. Brandin, and J. A. Golovchenko, Nat. Mater. NMAACR 1476-1122 10.1038/nmat965 2, 611 (2003).
7. A. J. Storm, C. Storm, J. Chen, H. Zandbergen, J. F. Joanny, and C. Dekker, Nano Lett. NALEFD 1530-6984 10.1021/nl048030d 5, 1193 (2005).
8. W. Sung and P. J. Park, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.77.783 77, 783 (1996).
9. M. Muthukumar, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.480386 111, 10371 (1999).
10. A. Kamenev, J. Zhang, A. I. Larkin, and B. I. Shklovskii, Physica A PHYADX 0378-4371 359, 129 (2006).
11. D. K. Lubensky and D. R. Nelson, Biophys. J. BIOJAU 0006-3495 77, 1824 (1999).
12. Y. Kantor and M. Kardar, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.69.021806 69, 021806 (2004).
13. J. Chuang, Y. Kantor, and M. Kardar, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.65.011802 65, 011802 (2002).
14. J. Mathe, A. Aksimentiev, D. R. Nelson, K. Schulten, and A. Meller, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 102, 12377 (2005).
15. L. Song, M. R. Hobaugh, C. Shustak, S. Cheley, H. Bayley, and J. E. Gouaux, Science SCIEAS 0036-8075 10.1126/science.274.5294.1859 274, 1859 (1996).
16. M. Gitterman, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.62.6065 62, 6065 (2000).
17. S. B. Yuste and K. Lindenberg, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.69.033101 69, 033101 (2004).
18. M. Gitterman, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.69.033102 69, 033102 (2004).
19. R. Metzler and J. Klafter, Biophys. J. BIOJAU 0006-3495 85, 2776 (2003).
20. R. Metzler and J. Klafter, J. Phys. A JPHAC5 0305-4470 10.1088/0305-4470/37/31/R01 37, R161 (2004).
21. J. Klafter and I. Sokolov, Phys. World PHWOEW 0953-8585 18, 29 (2005).
22. R. Metzler, E. Barkai, and J. Klafter, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.82.3563 82, 3563 (1999).
23. L. Pontryagin, A. Andronov, and A. Vitt, Zh. Eksp. Teor. Fiz. ZETFA7 0044-4510 3, 165 (1933);
24. translated and reprinted in Noise in Nonlinear Dynamical Systems, edited by, F. Moss, and, P. V. E. McClintock, (Cambridge University Press, Cambridge, 1989), Vol. 1, p. 329.
25. P. Hanggi, P. Talkner, and M. Borkovec, Rev. Mod. Phys. RMPHAT 0034-6861 10.1103/RevModPhys.62.251 62, 251 (1990).
26. S. Redner, A Guide to First-Passage Processes (Cambridge University Press, Cambridge, 2001).
27. H. Risken, The Fokker-Planck Equation (Springer-Verlag, Berlin, 1984).