Nocardioides tritolerans sp. nov., isolated from soil in Bigeum Island, Korea

Journal of Microbiology and Biotechnology

Volumn 18, Issue 7, 2008, Pages 1203-1206

  Dastager, Syed G ^a   Lee, Jae Chan ^a   Ju, Yoon Jung ^a   Park, Dong Jin ^a   Kim, Chang Jin ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

16S rDNA; Nocardioides tritolerans sp. nov.; Polyphasic taxonomy

Indexed keywords

DIAMINOPIMELIC ACID; FATTY ACID; MENAQUINONE; PEPTIDOGLYCAN; RNA 16S;

ACTINOBACTERIA; AEROBIC BACTERIUM; ARTICLE; BACTERIAL CELL; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL STRAIN; CELL STRUCTURE; CHEMOTAXONOMY; CONTROLLED STUDY; GENE SEQUENCE; KOREA; NOCARDIOIDACEAE; NOCARDIOIDES AESTUARII; NOCARDIOIDES TRITOLERANS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; SEQUENCE HOMOLOGY; SOIL MICROFLORA;

ACTINOMYCETALES; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; KOREA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

NOCARDIOIDES; NOCARDIOIDES AESTUARII; POSIBACTERIA;

EID: 50249186256     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: None     Document Type: Article

References (26)

1. Bakermans, C. and E. L. Madsen. 2002. Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated aquifer waters. Microb. Ecol. 44: 95-106.
2. Chun, J., J.-H. Lee, Y. Jung, M. Kim, S. Kim, B. K. Kim, and Y. W. Lim. 2007. EzTaxon: A Web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequence. Int. J. Syst. Evol. Microbiol. 57: 2259-2261.
3. Felsenstein, J. 1981. Evolutionary tree from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17: 368-376.
4. Felsenstein, J. 1985. Confidence limits on phylogenetics: An approach using the bootstrap. Evolution 39: 783-791.
5. Felsenstein, J. 2002. PHYLIP (phylogeny inference package), version 3.6a. Distributed by the author. Department of Genetics, University of Washington, Seattle, U.S.A.
6. Hopwood, D. A., M. J. Bibb, K. F. Chater, T. Kieser, C. J. Bruton, H. M. Kieser, et al. 1985. Genetic Manipulation of Streptomyces - A Laboratory Manual. The John Innes Foundation, Norwich.
7. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence. J. Mol. Evol. 16: 111-120.
8. Kluge, A. G. and F. S. Farris. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18: 1-32.
9. Komagata, K. and K. Suzuki. 1987. Lipid and cell wall analysis in bacterial systematics. Methods Microbiol. 19: 161-206.
10. Kubota, M., K. Kawahara, K. Sekiya, T. Uchida, Y. Hattori, H. Futamata, and A. Hiraisbi. 2005. Nocardioides aromaticivorans sp. nov., a dibenzofuran-degrading bacterium isolated from dioxin-polluted environments. Syst. Appl. Microbiol. 28: 165-174.
11. Lanyi, B. 1997. Classical and rapid identification methods for medically important bacteria. Methods Microbiol. 19: 1-67.
12. Lechevalier, M. P. and H. Lechevalier. 1970. Chemical composition as a criterion in the classification of aerobic actinomycetes. Int. J. Syst. Bacteriol. 20: 435-443.
13. Leifson, E. 1963. Determination of carbohydrate metabolism of marine bacteria. J. Bacteriol. 85: 1183-1184.
14. Marmur, J. and P. Doty. 1962. Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. Mol. Biol. 5: 109-118.
15. Mesbah, M., U. Premachandran, and W. B. Whitman. 1989. Precise measurement of the G-C content of deoxyribonucleic acid by high performance liquid chromatography. Int. J. Syst. Bacteriol. 39: 159-167.
16. Prauser, H. 1976. Nocardioides, a new genus of the order Actinomycetales. Int. J. Syst. Bacteriol. 26: 58-65.
17. Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic tree. Mol. Biol. Evol. 4: 406-425.
18. Sasser, M. 1990. Identification of bacteria by gas chromatography of cellular fatty acids. USFCC News Lett. 20: 1-6.
19. Stackebrandt, E. and B. M. Goebel. 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol 44: 846-849.
20. Thompson, J. D., T. J. Gibson, F. Plewniak F. Jeanmougin, and D. G. Higgins. 1997. The Clustal X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4888.
21. Wayne, L. G., D. J. Brenner, R. R. Colwell, P. A. D. Grimont, O. Kandler, M. I. Krichevsky, et al. 1987. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37: 463-464.
22. Xu, P., W. J. Li, L. H. Xu, and C. L. Jiang. 2003. A microwave based method for genomic DNA extraction from actinomycetes. Microbiology 30: 82-84.
23. Yi, H. and J. Chun. 2004. Nocardioides aestuarii sp. nov., isolated from tidal flat sediment. Int. J. Syst. Evol Microbiol. 54: 2151-2154.
24. Yoon, J.-H. and Y.-H. Park. 2006. The genus Nocardioides. pp. 1099-1113. In M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (eds.), The Prokaryotes. A Handbook on the Biology of Bacteria. 3rd Ed. Springer.
25. Yoon, J.-H., Y.-G. Cho, S. T. Lee, K.-I. Suzuki, T. Nakase, and Y.-H. Park. 1999. Nocardioides nitrophenolicus sp. nov., a p-nitrophenol-degrading bacterium. Int. J. Syst. Bacteriol. 49 : 675-680.
26. Yoon, J.-H., J.-K. Lee, S.-Y. Jung, J.-A. Kim, H.-K. Kim, and T.-K. Oh. 2006. Nocardioides kongjuensis sp. nov., an N-acylhomoserine lactone-degrading bacterium. Int. J. Syst. Evol. Microbiol. 56: 1783-1787.