Nocardioides nitrophenolicus sp. nov., a p-nitrophenol-degrading bacterium

International Journal of Systematic Bacteriology

Volumn 49, Issue 2, 1999, Pages 675-680

  Yoon, Jung Hoon ^a   Cho, Young Gyun ^b   Lee Taik, Sung ^a   Suzuki, Ken Ichiro ^c   Nakase, Takashi ^a   Park, Yong Ha ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^c RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

Nocardioides nitrophenolicus; P nitrophenol degradation

Indexed keywords

4 NITROPHENOL; BACTERIAL DNA;

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA BASE COMPOSITION; DNA SEQUENCE; GRAM POSITIVE BACTERIUM; LIPID COMPOSITION; NOCARDIOIDES NITROPHENOLICUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL;

BACTERIA (MICROORGANISMS); NOCARDIOIDES; NOCARDIOIDES NITROPHENOLICUS; PIMELOBACTER SIMPLEX; POSIBACTERIA; PROKARYOTA;

EID: 0032900280     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-49-2-675     Document Type: Article

References (21)

1. Arima, K., Nagasawa, M., Bae, M. &Tamura, G. (1969). Microbial transformation of sterols. I. Decomposition of cholesterol by microorganisms. Agric Biol Chem 33, 1636-1643.
2. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
3. Gundersen, K. & Jensen, H. L. (1956). A soil bacterium decomposing organic nitro-compounds. Ada Agric Scand 6, 100-114.
4. Karlson, U., Dwyer, D. F., Hooper, S. W., Moore, E. R. B., Timmis, K. N. & Eltis, L D. (1993). Two independently regulated cytochromes P-450 in a Rlwdococcus rhodochrous strain that degrade 2-ethoxyphenol and 4-methoxybenzoate. J Bacterial 175, 1467-1474.
5. Komagata, K. & Suzuki, K.-l. (1987). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-203.
6. Kurup, V. P. & Fink, J. N. (1975). A scheme for the identification of thermophilic actinomycetes associated with hypersensitivity pneumonitis. J Clin Microbiol2, 55-61.
7. Lee, S.T., Lee, S. B. & Park, Y. H. (1991). Characterization of a pyridine-degrading branched Gram-positive bacterium isolated from the anoxic zone of an oil shale column. Appl Microbiol Biotechnol 35, 824-829.
8. Pitcher, D. G. & Collins, M. D. (1991). Phylogenetic analysis of some LL-diaminopimelic acid-containing coryneform bacteria from human skin: description of Propionibacteriwn iimomwn sp. nov. FEMS Microbiol Lett 84, 295-300.
9. Saitou, N. & Nei, M. (1987). The neighbor-joining method : a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
10. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. /;;/ J Syst Bacterial 16, 313-340.
11. Skerman, V. B. D. (1967). A Guide to the Identification of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins.
12. Suzuki, K. & Komagata, K. (1983). Pimelobacter gen. nov., a new genus of coryneform bacteria with LL-diaminopimelic acid in the cell wall. J Gen Appl Microbiol 29, 59-71.
13. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
14. Tamura, T. & Yokota, A. (1994). Transfer of Nocardioides fastidiosa Collins and Stackebrandt 1989 to the genus Aeromicrobiwn as Aeromicrobium fastidiosum comb. nov. Int J Syst Bacterial 44, 608-611.
15. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL \v: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
16. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. /;;/ / Syst Bacterial 37, 463-464.
17. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
18. Yoon, J.-H., Kirn, H., Kim, S.-B., Kirn, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H. (1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacterial 46, 502-505.
19. Yoon, J.-H., Rhee, S.-K.. Lee, J.-S., Park, Y.-H. & Lee, S.T. (1997). Nocardioides pyridinolyticiis sp. nov., a pyridine-degrading bacterium isolated from the oxic zone of an oil shale column. Int J Syst Bacterial 47, 933-938.
20. Yoon, J.-H., Lee, S.T. & Park, Y.-H. (1998a). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacterial 48, 187-194.
21. Yoon, J.-H., Lee, S.T. & Park, Y.-H. (1998b). Genetic analyses of the genus Nocardioides and related taxa based on 16S-23S rDNA internally transcribed spacer sequences. Int J Syst Bacterial 48, 641-650.