메뉴 건너뛰기




Volumn 69, Issue 6, 2008, Pages 1560-1574

RloC: A wobble nucleotide-excising and zinc-responsive bacterial tRNase

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; NUCLEASE; PROTEIN PRRC; PROTEIN RLOC; RAD50 PROTEIN; RIBONUCLEASE; TRANSFER RIBONUCLEASE; UNCLASSIFIED DRUG;

EID: 50049129641     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2008.06387.x     Document Type: Article
Times cited : (35)

References (46)
  • 1
    • 0021253053 scopus 로고
    • Genetic and physiological studies of an Escherichia coli locus that restricts polynucleotide kinase and RNA ligase mutants of bacteriophage T4
    • Abdul-Jabbar, M. Snyder, L. (1984) Genetic and physiological studies of an Escherichia coli locus that restricts polynucleotide kinase and RNA ligase mutants of bacteriophage T4. J Virol 51 : 522 529.
    • (1984) J Virol , vol.51 , pp. 522-529
    • Abdul-Jabbar, M.1    Snyder, L.2
  • 3
    • 31844443618 scopus 로고    scopus 로고
    • The A-loop, a novel conserved aromatic acid subdomain upstream of the Walker a motif in ABC transporters, is critical for ATP binding
    • Ambudkar, S.V., Kim, I.W., Xia, D. Sauna, Z.E. (2006) The A-loop, a novel conserved aromatic acid subdomain upstream of the Walker A motif in ABC transporters, is critical for ATP binding. FEBS Lett 580 : 1049 1055.
    • (2006) FEBS Lett , vol.580 , pp. 1049-1055
    • Ambudkar, S.V.1    Kim, I.W.2    Xia, D.3    Sauna, Z.E.4
  • 4
    • 0023388202 scopus 로고
    • Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA
    • Amitsur, M., Levitz, R. Kaufmann, G. (1987) Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA. EMBO J 6 : 2499 2503.
    • (1987) EMBO J , vol.6 , pp. 2499-2503
    • Amitsur, M.1    Levitz, R.2    Kaufmann, G.3
  • 5
    • 0024445094 scopus 로고
    • In vitro reconstitution of anticodon nuclease from components encoded by phage T4 and Escherichia coli CTr5X
    • Amitsur, M., Morad, I. Kaufmann, G. (1989) In vitro reconstitution of anticodon nuclease from components encoded by phage T4 and Escherichia coli CTr5X. EMBO J 8 : 2411 2415.
    • (1989) EMBO J , vol.8 , pp. 2411-2415
    • Amitsur, M.1    Morad, I.2    Kaufmann, G.3
  • 6
    • 0026740428 scopus 로고
    • HSD restriction-modification proteins partake in latent anticodon nuclease
    • Amitsur, M., Morad, I., Chapman-Shimshoni, D. Kaufmann, G. (1992) HSD restriction-modification proteins partake in latent anticodon nuclease. EMBO J 11 : 3129 3134.
    • (1992) EMBO J , vol.11 , pp. 3129-3134
    • Amitsur, M.1    Morad, I.2    Chapman-Shimshoni, D.3    Kaufmann, G.4
  • 7
    • 0141818936 scopus 로고    scopus 로고
    • Bacteriophage T4-encoded Stp can be replaced as activator of anticodon nuclease by a normal host cell metabolite
    • Amitsur, M., Benjamin, S., Rosner, R., Chapman-Shimshoni, D., Meidler, R., Blanga, S. Kaufmann, G. (2003) Bacteriophage T4-encoded Stp can be replaced as activator of anticodon nuclease by a normal host cell metabolite. Mol Microbiol 50 : 129 143.
    • (2003) Mol Microbiol , vol.50 , pp. 129-143
    • Amitsur, M.1    Benjamin, S.2    Rosner, R.3    Chapman-Shimshoni, D.4    Meidler, R.5    Blanga, S.6    Kaufmann, G.7
  • 8
    • 0030088086 scopus 로고    scopus 로고
    • Site-specific mutagenesis by using an accurate recombinant polymerase chain reaction method
    • Ansaldi, M., Lepelletier, M. Mejean, V. (1996) Site-specific mutagenesis by using an accurate recombinant polymerase chain reaction method. Anal Biochem 234 : 110 111.
    • (1996) Anal Biochem , vol.234 , pp. 110-111
    • Ansaldi, M.1    Lepelletier, M.2    Mejean, V.3
  • 9
    • 0034598955 scopus 로고    scopus 로고
    • Antirestriction protein Ard (Type C) encoded by IncW plasmid pSa has a high similarity to the 'protein transport' domain of TraC1 primase of promiscuous plasmid RP4
    • Belogurov, A.A., Delver, E.P., Agafonova, O.V., Belogurova, N.G., Lee, L.Y. Kado, C.I. (2000) Antirestriction protein Ard (Type C) encoded by IncW plasmid pSa has a high similarity to the 'protein transport' domain of TraC1 primase of promiscuous plasmid RP4. J Mol Biol 296 : 969 977.
    • (2000) J Mol Biol , vol.296 , pp. 969-977
    • Belogurov, A.A.1    Delver, E.P.2    Agafonova, O.V.3    Belogurova, N.G.4    Lee, L.Y.5    Kado, C.I.6
  • 10
    • 33646418420 scopus 로고    scopus 로고
    • Control of the endonuclease activity of type I restriction-modification systems is required to maintain chromosome integrity following homologous recombination
    • Blakely, G.W. Murray, N.E. (2006) Control of the endonuclease activity of type I restriction-modification systems is required to maintain chromosome integrity following homologous recombination. Mol Microbiol 60 : 883 893.
    • (2006) Mol Microbiol , vol.60 , pp. 883-893
    • Blakely, G.W.1    Murray, N.E.2
  • 11
    • 33745307149 scopus 로고    scopus 로고
    • PrrC-anticodon nuclease: Functional organization of a prototypical bacterial restriction RNase
    • Blanga-Kanfi, S., Amitsur, M., Azem, A. Kaufmann, G. (2006) PrrC-anticodon nuclease: functional organization of a prototypical bacterial restriction RNase. Nucleic Acids Res 34 : 3209 3219.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3209-3219
    • Blanga-Kanfi, S.1    Amitsur, M.2    Azem, A.3    Kaufmann, G.4
  • 13
    • 0032525069 scopus 로고    scopus 로고
    • TRNA anticodon recognition and specification within subclass IIb aminoacyl-tRNA synthetases
    • Commans, S., Lazard, M., Delort, F., Blanquet, S. Plateau, P. (1998) tRNA anticodon recognition and specification within subclass IIb aminoacyl-tRNA synthetases. J Mol Biol 278 : 801 813.
    • (1998) J Mol Biol , vol.278 , pp. 801-813
    • Commans, S.1    Lazard, M.2    Delort, F.3    Blanquet, S.4    Plateau, P.5
  • 14
    • 0036682830 scopus 로고    scopus 로고
    • Tethering on the brink: The evolutionarily conserved Mre11-Rad50 complex
    • Connelly, J.C. Leach, D.R. (2002) Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex. Trends Biochem Sci 27 : 410 418.
    • (2002) Trends Biochem Sci , vol.27 , pp. 410-418
    • Connelly, J.C.1    Leach, D.R.2
  • 15
    • 0035695023 scopus 로고    scopus 로고
    • Recombination at double-strand breaks and DNA ends: Conserved mechanisms from phage to humans
    • Cromie, G.A., Connelly, J.C. Leach, D.R. (2001) Recombination at double-strand breaks and DNA ends: conserved mechanisms from phage to humans. Mol Cell 8 : 1163 1174.
    • (2001) Mol Cell , vol.8 , pp. 1163-1174
    • Cromie, G.A.1    Connelly, J.C.2    Leach, D.R.3
  • 17
    • 0020447874 scopus 로고
    • T4 bacteriophage-coded polynucleotide kinase and RNA ligase are involved in host tRNA alteration or repair
    • David, M., Borasio, G.D. Kaufmann, G. (1982) T4 bacteriophage-coded polynucleotide kinase and RNA ligase are involved in host tRNA alteration or repair. Virology 123 : 480 483.
    • (1982) Virology , vol.123 , pp. 480-483
    • David, M.1    Borasio, G.D.2    Kaufmann, G.3
  • 19
    • 0036711227 scopus 로고    scopus 로고
    • Structure of a tRNA repair enzyme and molecular biology workhorse: T4 polynucleotide kinase
    • Galburt, E.A., Pelletier, J., Wilson, G. Stoddard, B.L. (2002) Structure of a tRNA repair enzyme and molecular biology workhorse: T4 polynucleotide kinase. Structure 10 : 1249 1260.
    • (2002) Structure , vol.10 , pp. 1249-1260
    • Galburt, E.A.1    Pelletier, J.2    Wilson, G.3    Stoddard, B.L.4
  • 20
    • 0242361562 scopus 로고    scopus 로고
    • Cleavage of the a site mRNA codon during ribosome pausing provides a mechanism for translational quality control
    • Hayes, C.S. Sauer, R.T. (2003) Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control. Mol Cell 12 : 903 911.
    • (2003) Mol Cell , vol.12 , pp. 903-911
    • Hayes, C.S.1    Sauer, R.T.2
  • 21
    • 0036790939 scopus 로고    scopus 로고
    • Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains
    • Ho, C.K. Shuman, S. (2002) Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains. Proc Natl Acad Sci USA 99 : 12709 12714.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12709-12714
    • Ho, C.K.1    Shuman, S.2
  • 22
    • 0037398027 scopus 로고    scopus 로고
    • Rad50/SMC proteins and ABC transporters: Unifying concepts from high-resolution structures
    • Hopfner, K.P. Tainer, J.A. (2003) Rad50/SMC proteins and ABC transporters: unifying concepts from high-resolution structures. Curr Opin Struct Biol 13 : 249 255.
    • (2003) Curr Opin Struct Biol , vol.13 , pp. 249-255
    • Hopfner, K.P.1    Tainer, J.A.2
  • 23
    • 0036682314 scopus 로고    scopus 로고
    • The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair
    • Hopfner, K.P., Craig, L., Moncalian, G., Zinkel, R.A., Usui, T., Owen, B.A., et al. (2002) The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 418 : 562 566.
    • (2002) Nature , vol.418 , pp. 562-566
    • Hopfner, K.P.1    Craig, L.2    Moncalian, G.3    Zinkel, R.A.4    Usui, T.5    Owen, B.A.6
  • 27
    • 0025264325 scopus 로고
    • The optional E. coli prr locus encodes a latent form of phage T4-induced anticodon nuclease
    • Levitz, R., Chapman, D., Amitsur, M., Green, R., Snyder, L. Kaufmann, G. (1990) The optional E. coli prr locus encodes a latent form of phage T4-induced anticodon nuclease. EMBO J 9 : 1383 1389.
    • (1990) EMBO J , vol.9 , pp. 1383-1389
    • Levitz, R.1    Chapman, D.2    Amitsur, M.3    Green, R.4    Snyder, L.5    Kaufmann, G.6
  • 28
    • 0025685480 scopus 로고
    • An anticodon nuclease gene inserted into a hsd region encoding a type I DNA restriction system
    • Linder, P., Doelz, R., Gubler, M. Bickle, T.A. (1990) An anticodon nuclease gene inserted into a hsd region encoding a type I DNA restriction system. Nucleic Acids Res 18 : 7170.
    • (1990) Nucleic Acids Res , vol.18 , pp. 7170
    • Linder, P.1    Doelz, R.2    Gubler, M.3    Bickle, T.A.4
  • 29
    • 0026356891 scopus 로고
    • Predicting coiled coils from protein sequences
    • Lupas, A., Van, D.M. Stock, J. (1991) Predicting coiled coils from protein sequences. Science 252 : 1162 1164.
    • (1991) Science , vol.252 , pp. 1162-1164
    • Lupas, A.1    Van, D.M.2    Stock, J.3
  • 30
    • 0033578322 scopus 로고    scopus 로고
    • Regulation of endonuclease activity by proteolysis prevents breakage of unmodified bacterial chromosomes by type I restriction enzymes
    • Makovets, S., Doronina, V.A. Murray, N.E. (1999) Regulation of endonuclease activity by proteolysis prevents breakage of unmodified bacterial chromosomes by type I restriction enzymes. Proc Natl Acad Sci USA 96 : 9757 9762.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 9757-9762
    • Makovets, S.1    Doronina, V.A.2    Murray, N.E.3
  • 31
    • 23644456852 scopus 로고    scopus 로고
    • An end-healing enzyme from Clostridium thermocellum with 5′ kinase, 2′,3′ phosphatase, and adenylyltransferase activities
    • Martins, A. Shuman, S. (2005) An end-healing enzyme from Clostridium thermocellum with 5′ kinase, 2′,3′ phosphatase, and adenylyltransferase activities. RNA 11 : 1271 1280.
    • (2005) RNA , vol.11 , pp. 1271-1280
    • Martins, A.1    Shuman, S.2
  • 33
    • 0041386480 scopus 로고    scopus 로고
    • Complete genome sequence of the broad-host-range vibriophage KVP40: Comparative genomics of a T4-related bacteriophage
    • Miller, E.S., Heidelberg, J.F., Eisen, J.A., Nelson, W.C., Durkin, A.S., Ciecko, A., et al. (2003) Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage. J Bacteriol 185 : 5220 5233.
    • (2003) J Bacteriol , vol.185 , pp. 5220-5233
    • Miller, E.S.1    Heidelberg, J.F.2    Eisen, J.A.3    Nelson, W.C.4    Durkin, A.S.5    Ciecko, A.6
  • 35
    • 33646557693 scopus 로고    scopus 로고
    • Nucleotide binding domain interactions during the mechanochemical reaction cycle of ATP-binding cassette transporters
    • Moody, J.E. Thomas, P.J. (2005) Nucleotide binding domain interactions during the mechanochemical reaction cycle of ATP-binding cassette transporters. J Bioenerg Biomembr 37 : 475 479.
    • (2005) J Bioenerg Biomembr , vol.37 , pp. 475-479
    • Moody, J.E.1    Thomas, P.J.2
  • 37
    • 0002157687 scopus 로고
    • Chromatographic mobilities of modified nucleotides
    • In. Schimmel, P.R., Soll, D. Abelson, J.N. (eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, pp.
    • Nishimura, S. (1979) Chromatographic mobilities of modified nucleotides. In Transfer RNA: Structure, Properties and Recognition. Schimmel, P.R., Soll, D. Abelson, J.N. (eds). Cold Spring Harbor, NY : Cold Spring Harbor Laboratory, pp. 551 552.
    • (1979) Transfer RNA: Structure, Properties and Recognition. , pp. 551-552
    • Nishimura, S.1
  • 38
    • 0029055234 scopus 로고
    • Phage T4-coded Stp: Double-edged effector of coupled DNA and tRNA-restriction systems
    • Penner, M., Morad, I., Snyder, L. Kaufmann, G. (1995) Phage T4-coded Stp: double-edged effector of coupled DNA and tRNA-restriction systems. J Mol Biol 249 : 857 868.
    • (1995) J Mol Biol , vol.249 , pp. 857-868
    • Penner, M.1    Morad, I.2    Snyder, L.3    Kaufmann, G.4
  • 39
  • 40
    • 0018098860 scopus 로고
    • A role in true-late gene expression for the T4 bacteriophage 5′-polynucleotide kinase 3′-phosphatase
    • Sirotkin, K., Cooley, W., Runnels, J. Snyder, L. (1978) A role in true-late gene expression for the T4 bacteriophage 5′-polynucleotide kinase 3′-phosphatase. J Mol Biol 123 : 221 233.
    • (1978) J Mol Biol , vol.123 , pp. 221-233
    • Sirotkin, K.1    Cooley, W.2    Runnels, J.3    Snyder, L.4
  • 41
    • 8744284492 scopus 로고    scopus 로고
    • Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench
    • Takami, H., Nishi, S., Lu, J., Shimamura, S. Takaki, Y. (2004) Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench. Extremophiles 8 : 351 356.
    • (2004) Extremophiles , vol.8 , pp. 351-356
    • Takami, H.1    Nishi, S.2    Lu, J.3    Shimamura, S.4    Takaki, Y.5
  • 42
    • 0021701397 scopus 로고
    • Genetic control of damage-inducible restriction alleviation in Escherichia coli K12: An SOS function not repressed by lexA
    • Thoms, B. Wackernagel, W. (1984) Genetic control of damage-inducible restriction alleviation in Escherichia coli K12: an SOS function not repressed by lexA. Mol Gen Genet 197 : 297 303.
    • (1984) Mol Gen Genet , vol.197 , pp. 297-303
    • Thoms, B.1    Wackernagel, W.2
  • 43
    • 0028293824 scopus 로고
    • The Escherichia coli prr region encodes a functional type IC DNA restriction system closely integrated with an anticodon nuclease gene
    • Tyndall, C., Meister, J. Bickle, T.A. (1994) The Escherichia coli prr region encodes a functional type IC DNA restriction system closely integrated with an anticodon nuclease gene. J Mol Biol 237 : 266 274.
    • (1994) J Mol Biol , vol.237 , pp. 266-274
    • Tyndall, C.1    Meister, J.2    Bickle, T.A.3
  • 44
    • 32444437179 scopus 로고    scopus 로고
    • The genome of the novel phage Rtp, with a rosette-like tail tip, is homologous to the genome of phage T1
    • Wietzorrek, A., Schwarz, H., Herrmann, C. Braun, V. (2006) The genome of the novel phage Rtp, with a rosette-like tail tip, is homologous to the genome of phage T1. J Bacteriol 188 : 1419 1436.
    • (2006) J Bacteriol , vol.188 , pp. 1419-1436
    • Wietzorrek, A.1    Schwarz, H.2    Herrmann, C.3    Braun, V.4
  • 45
    • 34250377197 scopus 로고    scopus 로고
    • The weird and wonderful world of bacterial ribosome regulation
    • Wilson, D.N. Nierhaus, K.H. (2007) The weird and wonderful world of bacterial ribosome regulation. Crit Rev Biochem Mol Biol 42 : 187 219.
    • (2007) Crit Rev Biochem Mol Biol , vol.42 , pp. 187-219
    • Wilson, D.N.1    Nierhaus, K.H.2
  • 46
    • 13544254264 scopus 로고    scopus 로고
    • Insights into the mRNA cleavage mechanism by MazF, an mRNA interferase
    • Zhang, Y., Zhang, J., Hara, H., Kato, I. Inouye, M. (2005) Insights into the mRNA cleavage mechanism by MazF, an mRNA interferase. J Biol Chem 280 : 3143 3150.
    • (2005) J Biol Chem , vol.280 , pp. 3143-3150
    • Zhang, Y.1    Zhang, J.2    Hara, H.3    Kato, I.4    Inouye, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.