The complete genome sequence and analysis of the human pathogen Campylobacter lari

Foodborne Pathogens and Disease

Volumn 5, Issue 4, 2008, Pages 371-386

  Miller, William G ^a   Wang, Guilin ^a   Binnewies, Tim T ^b   Parker, Craig T ^a  

^a WESTERN REGIONAL RESEARCH CENTER   (United States)

^b TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL COENZYME A; AMINO ACID; BACTERIAL ENZYME; OXIDOREDUCTASE; PANTOTHENIC ACID; PEPTIDASE;

AMINO ACID SYNTHESIS; ARTICLE; AUXOTROPHY; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI; ENERGY METABOLISM; ENVIRONMENTAL FACTOR; GENE FUNCTION; GENE SEQUENCE; GENETIC CODE; GENOME ANALYSIS; HEAT TOLERANCE; HOST PATHOGEN INTERACTION; NONHUMAN; PLASMID; PRIORITY JOURNAL; PROPHAGE; RESPIRATORY CHAIN;

CAMPYLOBACTER LARI; CHROMOSOME MAPPING; CHROMOSOMES, BACTERIAL; DNA, BACTERIAL; GENES, BACTERIAL; GENOME, BACTERIAL; HUMANS; MOLECULAR SEQUENCE DATA; PLASMIDS; POLYMERASE CHAIN REACTION; PROPHAGES; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN;

CAMPYLOBACTER; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI; CAMPYLOBACTERACEAE; EPSILONPROTEOBACTERIA; PROTEOBACTERIA;

EID: 49949105210     PISSN: 15353141     EISSN: None     Source Type: Journal    
DOI: 10.1089/fpd.2008.0101     Document Type: Article

References (71)

1. Aarestrup FM, Nielsen EM, Madsen M, and Engberg J. Antimicrobial susceptibility patterns of thermophilic Campylobacter spp. from humans, pigs, cattle, and broilers in Denmark. Antimicrob. Agents Chemother. 1997;41:2244-2250.
2. Asakura M, Samosornsuk W, Taguchi M, Kobayashi K, Misawa N, Kusumoto M, Nishimura K, Matsuhisa A, and Yamasaki S. Comparative analysis of cytolethal distending toxin (cdt) genes among Campylobacter jejuni, C. coli and C. fetus strains. Microb. Pathog. 2007;42:174-183.
3. Batchelor RA, Pearson BM, Friis LM, Guerry P, and Wells JM. Nucleotide sequences and comparison of two large conjugative plasmids from different Campylobacter species. Microbiology 2004;150:3507-3517.
4. Benjamin J, Leaper S, Owen RJ, and Skirrow MB. Description of Campylobacter laridis, a new species comprising the nalidixic acid resistant thermophilic Campylobacter (NARTC) group. Curr. Microbiol. 1983; 8:221-238.
5. Bergler H, Fuchsbichler S, Hogenauer G, and Turnowsky F. The enoyl-[acyl-carrier-protein] reductase (FabI) of Escherichia coli, which catalyzes a key regulatory step in fatty acid biosynthesis, accepts NADH and NADPH as cofactors and is inhibited by palmitoyl-CoA. Eur. J. Biochem. 1996;242:689-694.
6. Broczyk A, Thompson S, Smith D, and Lior H. Waterborne outbreak of Campylobacter laridis-associated gastroenteritis. Lancet 1987;1:164-165.
7. Csonka LN, Ikeda TP, Fletcher SA, and Kustu S. The accumulation of glutamate is necessary for optimal growth of Salmonella typhimurium in media of high osmolality but not induction of the proU operon. J. Bacteriol. 1994;176:6324-6333.
8. Duim B, Wagenaar JA, Dijkstra JR, Goris J, Endtz HP, and Vandamme PA. Identification of distinct Campylobacter lari genogroups by amplified fragment length polymorphism and protein electrophoretic profiles. Appl. Environ. Microbiol. 2004;70:18-24.
9. Endtz HP, Vliegenthart JS, Vandamme P, Weverink HW, van den Braak NP, Verbrugh HA, and van Belkum A. Genotypic diversity of Campylobacter lari isolated from mussels and oysters in the Netherlands. Int. J. Food Microbiol. 1997;34:79-88.
10. Engvall EO, Brandstrom B, Andersson L, Baverud V, Trowald-Wigh G, and Englund L. Isolation and identi-fication of thermophilic Campylobacter species in faecal samples from Swedish dogs. Scand. J. Infect. Dis. 2003;35:713-718.
11. Fouts DE, Mongodin EF, Mandrell RE, Miller WG, Rasko DA, Ravel J, Brinkac LM, Deboy RT, Parker CT, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Sullivan SA, Shetty JU, Ayodeji MA, Shvartsbeyn A, Schatz MC, Badger JH, Fraser CM, and Nelson KE. Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species. PLoS Biol. 2005;3:e15.
12. Gee JM, Valderas MW, Kovach ME, Grippe VK, Robertson GT, Ng WL, Richardson JM, Winkler ME, and Roop RM 2nd. The Brucella abortus Cu,Zn superoxide dismutase is required for optimal resistance to oxidative killing by murine macrophages and wild-type virulence in experimentally infected mice. Infect. Immun. 2005;73:2873-2880.
13. Georgopapadakou NH. Penicillin-binding proteins and bacterial resistance to beta-lactams. Antimicrob Agents Chemother. 1993;37:2045-2053.
14. Giacoboni GI, Itoh K, Hirayama K, Takahashi E, and Mitsuoka T. Comparison of fecal Campylobacter in calves and cattle of different ages and areas in Japan. J. Vet. Med. Sci. 1993;55:555-559.
15. Gilbert M, Godschalk P, Parker CT, Endtz H, and Wakarchuk W. Genetic basis for the variation in the lipooligosaccharide outer core of Campylobacter jejuni and possible association of glycosyltransferase genes with post-infectious neuropathies. In: Campylobacter: Molecular and Cellular Biology. Ketley, J. M. and M. E. Konkel (eds). Norfolk, UK: Horizon Bioscience, 2005, pp. 219-248.
16. Glunder G and Petermann S. The occurrence and characterization of Campylobacter spp. in silver gulls (Larus argentatus), three-toed gulls (Rissa tridactyla) and house sparrows (Passer domesticus) [In German]. Zentralbl. Veterinarmed. B. 1989;36:123-130.
17. Grant CC, Konkel ME, Cieplak W Jr, and Tompkins LS. Role of flagella in adherence, internalization, and translocation of Campylobacter jejuni in nonpolarized and polarized epithelial cell cultures. Infect. Immun. 1993; 61:1764-1771.
18. Harvey RB, Young CR, Ziprin RL, Hume ME, Genovese KJ, Anderson RC, Droleskey RE, Stanker LH, and Nisbet DJ. Prevalence of Campylobacter spp isolated from the intestinal tract of pigs raised in an integrated swine production system. J. Am. Vet. Med. Assoc. 1999; 215:1601-1604.
19. Heath RJ and Rock CO. A triclosan-resistant bacterial enzyme. Nature 2000;406:145-146.
20. Heath RJ, Su N, Murphy CK, and Rock CO. The enoyl-[acyl-carrier-protein] reductases FabI and FabL from Bacillus subtilis. J. Biol. Chem. 2000;275:40128-40133.
21. Hofreuter D, Tsai J, Watson RO, Novik V, Altman B, Benitez M, Clark C, Perbost C, Jarvie T, Du L, and Galan JE. Unique features of a highly pathogenic Campylobacter jejuni strain. Infect. Immun. 2006;74:4694-4707.
22. Holt JG. Bergey's Manual of Determinative Bacteriology. Baltimore, MD: Lippincott Williams & Wilkins, 1994.
23. Karlyshev AV, Champion OL, Churcher C, Brisson JR, Jarrell HC, Gilbert M, Brochu D, St Michael F, Li J, Wakarchuk WW, Goodhead I, Sanders M, Stevens K, White B, Parkhill J, Wren BW, and Szymanski CM. Analysis of Campylobacter jejuni capsular loci reveals multiple mechanisms for the generation of structural diversity and the ability to form complex heptoses. Mol. Microbiol. 2005;55:90-103.
24. Keith KE and Valvano MA. Characterization of SodC, a periplasmic superoxide dismutase from Burkholderia cenocepacia. Infect. Immun. 2007;75:2451-2460.
25. Kempf B and Bremer E. Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments. Arch. Microbiol. 1998;170: 319-330.
26. Kim YH, Lee Y, Kim S, Yeom J, Yeom S, Seok Kim B, Oh S, Park S, Jeon CO, and Park W. The role of periplasmic antioxidant enzymes (superoxide dismutase and thiol peroxidase) of the Shiga toxin-producing Escherichia coli O157:H7 in the formation of biofilms. Proteomics 2006;6:6181-6193.
27. Lastovica AJ and Skirrow MB. Clinical significance of Campylobacter and related species other than Campylobacter jejuni and C. coli. In: Campylobacter. Nachamkin I and Blaser MJ (eds). Washington, DC: ASM Press, 2000, pp. 89-120.
28. Lawley T, Wilkins BM, and Frost LS. Bacterial conjugation in Gram-negative bacteria. In: Plasmid Biology. Funnell BE and Phillips GJ (eds). Washington, DC: ASM Press, 2004, pp. 203-226.
29. Lawson AJ, On SL, Logan JM, and Stanley J. Campylobacter hominis sp. nov., from the human gastrointestinal tract. Int. J. Syst. Evol. Microbiol. 2001;51:651-660.
30. Leatherbarrow AJ, Griffiths R, Hart CA, Kemp R, Williams NJ, Diggle PJ, Wright EJ, Sutherst J, Houghton P, and French NP. Campylobacter lari: genotype and antibiotic resistance of isolates from cattle, wildlife and water in an area of mixed dairy farmland in the United Kingdom. Environ. Microbiol. 2007;9:1772-1779.
31. Lin CW, Yin PL, and Cheng KS. Incidence and clinical manifestations of Campylobacter enteritis in central Taiwan. Zhonghua Yi Xue Za Zhi (Taipei) 1998;61:339-345.
32. Lindblom GB, Johny M, Khalil K, Mazhar K, Ruiz-Palacios GM, and Kaijser B. Enterotoxigenicity and frequency of Campylobacter jejuni, C. coli and C. laridis in human and animal stool isolates from different countries. FEMS Microbiol. Lett. 1990;54:163-167.
33. Lowe TM and Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997;25:955-964.
34. Martinot M, Jaulhac B, Moog R, De Martino S, Kehrli P, Monteil H, and Piemont Y. Campylobacter lari bacteremia. Clin. Microbiol. Infect. 2001;7:96-97.
35. Miller WG, On SL, Wang G, Fontanoz S, Lastovica AJ, and Mandrell RE. Extended multilocus sequence typing system for Campylobacter coli, C. lari, C. upsaliensis, and C. helveticus. J. Clin. Microbiol. 2005a;43:2315-2329.
36. Miller WG, Parker CT, Rubenfield M, Mendz GL, Wosten MM, Ussery DW, Stolz JF, Binnewies TT, Hallin PF, Wang G, Malek JA, Rogosin A, Stanker LH, and Mandrell RE. The complete genome sequence and analysis of the Epsilonproteobacterium Arcobacter butzleri. PLoS ONE. 2007;2:e1358.
37. Miller WG, Pearson BM, Wells JM, Parker CT, Kapitonov VV, and Mandrell RE. Diversity within the Campylobacter jejuni type I restriction- modification loci. Microbiology 2005b;151:337-351.
38. Moore JE, Gilpin D, Crothers E, Canney A, Kaneko A, and Matsuda M. Occurrence of Campylobacter spp. and Cryptosporidium spp. in seagulls (Larus spp.). Vector Borne Zoonotic Dis. 2002;2:111-114.
39. Morris CN, Scully B, and Garvey GJ. Campylobacter lari associated with permanent pacemaker infection and bacteremia. Clin. Infect. Dis. 1998;27:220-221.
40. Nachamkin I, Stowell C, Skalina D, Jones AM, Hoop RM 2nd, and Smibert RM. Campylobacter laridis causing bacteremia in an immunosuppressed patient. Ann Intern Med. 1984;101:55-57.
41. Negari S, Sulpher J, Pacello F, Ingrey K, Battistoni A, and Lee BC. A role for Haemophilus ducreyi Cu,ZnSOD in resistance to heme toxicity. Biometals 2008;21:249-258.
42. Obiri-Danso K and Jones K. Distribution and seasonality of microbial indicators and thermophilic campylobacters in two freshwater bathing sites on the River Lune in northwest England. J. Appl. Microbiol. 1999a;87:822-832.
43. Obiri-Danso K and Jones K. The effect of a new sewage treatment plant on faecal indicator numbers, campylobacters and bathing water compliance in Morecambe Bay. J. Appl. Microbiol. 1999b;86:603-614.
44. Obiri-Danso K, Paul N, and Jones K. The effects of UVB and temperature on the survival of natural populations and pure cultures of Campylobacter jejuni, Camp. coli, Camp. lari and urease-positive thermophilic campylobacters (UPTC) in surface waters. J. Appl. Microbiol. 2001;90:256-267.
45. On SL, Atabay HI, Corry JE, Harrington CS, and Vandamme P. Emended description of Campylobacter sputorum and revision of its infrasubspecific (biovar) divisions, including C. sputorum biovar paraureolyticus, a urease-producing variant from cattle and humans. Int. J. Syst. Bacteriol. 1998;48 Pt 1:195-206.
46. On SL and Harrington CS. Identification of taxonomic and epidemiological relationships among Campylobacter species by numerical analysis of AFLP profiles. FEMS Microbiol. Lett. 2000;193:161-169.
47. Otasevic M, Lazarevic-Jovanovic B, Tasic-Dimov D, Dordevic N, and Miljkovic-Selimovic B. The role of certain Campylobacter types in the etiology of enterocolitis [In Serbian]. Vojnosanit Pregl. 2004;61:21-27.
48. Parker CT, Horn ST, Gilbert M, Miller WG, Woodward DL, and Mandrell RE. Comparison of Campylobacter jejuni lipooligosaccharide biosynthesis loci from a variety of sources. J. Clin. Microbiol. 2005;43:2771-2781.
49. Parker CT, Miller WG, Horn ST, and Lastovica AJ. Common genomic features of Campylobacter jejuni subsp. doylei strains distinguish them from C. jejuni subsp. jejuni. BMC Microbiol. 2007;7:50.
50. Parkhill J, Wren BW, Mungall K, Ketley JM, Churcher C, Basham D, Chillingworth T, Davies RM, Feltwell T, Holroyd S, Jagels K, Karlyshev AV, Moule S, Pallen MJ, Penn CW, Quail MA, Rajandream MA, Rutherford KM, van Vliet AH, Whitehead S, and Barrell BG. The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences. Nature 2000;403: 665-668.
51. Pearson BM, Gaskin DJ, Segers RP, Wells JM, Nuijten PJ, and van Vliet AH. The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828). J. Bacteriol. 2007;189:8402-8403.
52. Peter H, Weil B, Burkovski A, Kramer R, and Morbach S. Corynebacterium glutamicum is equipped with four secondary carriers for compatible solutes: identification, sequencing, and characterization of the proline/ectoine uptake system, ProP, and the ectoine/proline/glycine betaine carrier, EctP. J. Bacteriol. 1998;180:6005-6012.
53. Pickett CL and Lee RB. Cytolethal distending toxin. In: Campylobacter: Molecular and Cellular biology. Ketley JM and Konkel ME (eds). Norfolk, UK: Horizon Bioscience, 2005, pp. 385-396.
54. Prasad KN, Dixit AK, and Ayyagari A. Campylobacter species associated with diarrhoea in patients from a tertiary care centre of north India. Indian J. Med. Res. 2001;114:12-17.
55. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, and Barrell B. Artemis: sequence visualization and annotation. Bioinformatics 2000;16: 944-945.
56. Sadosky AB, Wilson JW, Steinman HM, and Shuman HA. The iron superoxide dismutase of Legionella pneumophila is essential for viability. J. Bacteriol. 1994;176:3790-3799.
57. Skirrow MB and Benjamin J. A human strain of Campylobacter fetus subsp. intestinalis grown at 42 degrees C. J. Clin. Pathol. 1980;33:603-604.
58. Skirrow MB, Jones DM, Sutcliffe E, and Benjamin J. Campylobacter bacteraemia in England and Wales, 1981-91. Epidemiol. Infect. 1993;110:567-573.
59. Smibert RM. Genus Campylobacter. In: Bergey's manual of systematic bacteriology. Krieg NR and Holt HG (eds). Baltimore, MD: The Williams & Wilkins Co., 1984, pp. 111-118.
60. Soderstrom C, Schalen C, and Walder M. Septicaemia caused by unusual Campylobacter species (C. laridis and C. mucosalis). Scand. J. Infect. Dis. 1991;23:369-371.
61. Steger R, Weinand M, Kramer R, and Morbach S. LcoP, an osmoregulated betaine/ectoine uptake system from Corynebacterium glutamicum. FEBS Lett. 2004;573:155-3160.
62. Steinman HM. Function of periplasmic copper-zinc superoxide dismutase in Caulobacter crescentus. J. Bacteriol. 1993;175:1198-1202.
63. Stoddard RA. Salmonella and Campylobacter spp. in northern elephant seals, California. Emerg. Infect. Dis. 2005; 11:1967-1969.
64. Stoddard RA, Miller WG, Foley JE, Lawrence J, Gulland FM, Conrad PA, and Byrne BA. Campylobacter insulaenigrae Isolates from northern elephant seals (Mirounga angustirostris) in California. Appl. Environ. Microbiol. 2007;73:1729-1735.
65. Tauxe RV, Patton CM, Edmonds P, Barrett TJ, Brenner DJ, and Blake PA. Illness associated with Campylobacter laridis, a newly recognized Campylobacter species. J. Clin. Microbiol. 1985;21:222-225.
66. Taylor DE and Tracz DM. Mechanisms of antimicrobial resistance in Campylobacter. In: Campylobacter: Molecular and Cellular biology. Ketley JM and Konkel ME (eds). Norfolk, UK: Horizon Bioscience, 2005, pp. 193-204.
67. Thwaites RT and Frost JA. Drug resistance in Campylobacter jejuni, C coli, and C lari isolated from humans in north west England and Wales, 1997. J. Clin. Pathol. 1999;52:812-814.
68. Tresierra-Ayala A, Bendayan ME, Bernuy A, Pereyra G, and Fernandez H. Chicken as potential contamination source of Campylobacter lari in Iquitos, Peru. Rev. Inst. Med. Trop. Sao Paulo 1994;36:497-499.
69. Van Doorn LJ, Verschuuren-Van Haperen A, Van Belkum A, Endtz HP, Vliegenthart JS, Vandamme P, and Quint WG. Rapid identification of diverse Campylobacter lari strains isolated from mussels and oysters using a reverse hybridization line probe assay. J. Appl. Microbiol. 1998;84:545-550.
70. Waldenstrom J, On SL, Ottvall R, Hasselquist D, and Olsen B. Species diversity of campylobacteria in a wild bird community in Sweden. J. Appl. Microbiol. 2007;102:424-432.
71. Wang Y, Huang WM, and Taylor DE. Cloning and nucleotide sequence of the Campylobacter jejuni gyrA gene and characterization of quinolone resistance mutations. Antimicrob. Agents Chemother. 1993;37: 457-463.