메뉴 건너뛰기




Volumn 35, Issue 2, 2008, Pages 383-388

Improved prediction of subcellular location for apoptosis proteins by the dual-layer support vector machine

Author keywords

Amino acid composition; Amphiphilic pseudo amino acid composition; Apoptosis protein; Dipeptide composition; Dual layer support vector machine; Subcellular location

Indexed keywords

AMINO ACID; CYTOPLASM PROTEIN; DIPEPTIDE; MITOCHONDRIAL PROTEIN; PROTEIN;

EID: 49749132014     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-007-0608-y     Document Type: Article
Times cited : (46)

References (70)
  • 1
    • 0242383466 scopus 로고    scopus 로고
    • K-SVCR. a support vector machine for multi-class classification
    • C Angulo X Parra A Català 2003 K-SVCR. A support vector machine for multi-class classification Neurocomputing 55 57 77
    • (2003) Neurocomputing , vol.55 , pp. 57-77
    • Angulo, C.1    Parra, X.2    Català, A.3
  • 2
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • A Bairoch R Apweiler 2000 The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 Nucleic Acids Res 28 45 48
    • (2000) Nucleic Acids Res , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 3
    • 3242877807 scopus 로고    scopus 로고
    • ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST
    • M Bhasin GPS Raghava 2004 ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST Nucleic Acids Res 32 W414 W419
    • (2004) Nucleic Acids Res , vol.32
    • Bhasin, M.1    Raghava, G.P.S.2
  • 5
    • 33746717455 scopus 로고    scopus 로고
    • Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains
    • A Bulashevska R Eils 2006 Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains BMC Bioinformatics 7 298
    • (2006) BMC Bioinformatics , vol.7 , pp. 298
    • Bulashevska, A.1    Eils, R.2
  • 6
    • 33750475941 scopus 로고    scopus 로고
    • Using pseudo-amino acid composition and support vector machine to predict protein structural class
    • C Chen YX Tian XY Zou PX Cai JY Mo 2006a Using pseudo-amino acid composition and support vector machine to predict protein structural class J Theor Biol 243 444 448
    • (2006) J Theor Biol , vol.243 , pp. 444-448
    • Chen, C.1    Tian, Y.X.2    Zou, X.Y.3    Cai, P.X.4    Mo, J.Y.5
  • 7
    • 33748287103 scopus 로고    scopus 로고
    • Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network
    • C Chen XB Zhou YX Tian XY Zhou PX Cai 2006b Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network Anal Biochem 357 116 121
    • (2006) Anal Biochem , vol.357 , pp. 116-121
    • Chen, C.1    Zhou, X.B.2    Tian, Y.X.3    Zhou, X.Y.4    Cai, P.X.5
  • 8
    • 34548301416 scopus 로고    scopus 로고
    • Prediction of linear B-cell epitopes using amino acid pair antigenicity scale
    • J Chen H Liu J Yang KC Chou 2007 Prediction of linear B-cell epitopes using amino acid pair antigenicity scale Amino Acids 33 423 428
    • (2007) Amino Acids , vol.33 , pp. 423-428
    • Chen, J.1    Liu, H.2    Yang, J.3    Chou, K.C.4
  • 9
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo-amino acid composition
    • KC Chou 2001 Prediction of protein cellular attributes using pseudo-amino acid composition Proteins Struct Funct Genet 43 246 255
    • (2001) Proteins Struct Funct Genet , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 10
    • 3242792729 scopus 로고    scopus 로고
    • Review: Structural bioinformatics and its impact to biomedical science
    • KC Chou 2004 Review: structural bioinformatics and its impact to biomedical science Curr Med Chem 11 2105 2134
    • (2004) Curr Med Chem , vol.11 , pp. 2105-2134
    • Chou, K.C.1
  • 11
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    • KC Chou 2005 Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes Bioinformatics 21 10 19
    • (2005) Bioinformatics , vol.21 , pp. 10-19
    • Chou, K.C.1
  • 12
    • 34249650486 scopus 로고    scopus 로고
    • Atta-ur-Rahman, Reitz AB (eds) Bentham Science Publishers, The Netherlands
    • Chou KC (2006) Frontiers in medicinal chemistry. In: Atta-ur-Rahman, Reitz AB (eds) Bentham Science Publishers, The Netherlands, pp 455-502
    • (2006) Frontiers in Medicinal Chemistry , pp. 455-502
    • Chou, K.C.1
  • 13
    • 0037195776 scopus 로고    scopus 로고
    • Using functional domain composition and support vector machines for prediction of protein subcellular location
    • KC Chou YD Cai 2002 Using functional domain composition and support vector machines for prediction of protein subcellular location J Biol Chem 227 45765 45769
    • (2002) J Biol Chem , vol.227 , pp. 45765-45769
    • Chou, K.C.1    Cai, Y.D.2
  • 14
    • 0345305854 scopus 로고    scopus 로고
    • Prediction and classification of protein subcellular location - Sequence-order effect and pseudo amino acid composition
    • KC Chou YD Cai 2003 Prediction and classification of protein subcellular location - sequence-order effect and pseudo amino acid composition J Cell Biochem 90 1250 1260
    • (2003) J Cell Biochem , vol.90 , pp. 1250-1260
    • Chou, K.C.1    Cai, Y.D.2
  • 15
    • 7444264582 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition
    • KC Chou YD Cai 2004a Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition J Cell Biochem 91 1197 1203
    • (2004) J Cell Biochem , vol.91 , pp. 1197-1203
    • Chou, K.C.1    Cai, Y.D.2
  • 16
    • 3142779931 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations by GO-FunD-PseAA predictor
    • KC Chou YD Cai 2004b Prediction of protein subcellular locations by GO-FunD-PseAA predictor Biochem Biophys Res Commun 320 1236 1239
    • (2004) Biochem Biophys Res Commun , vol.320 , pp. 1236-1239
    • Chou, K.C.1    Cai, Y.D.2
  • 17
    • 0031449933 scopus 로고    scopus 로고
    • Prediction of the tertiary structure and substrate binding site of caspase-8
    • KC Chou D Jones RL Heinrikson 1997 Prediction of the tertiary structure and substrate binding site of caspase-8 FEBS Lett 419 49 54
    • (1997) FEBS Lett , vol.419 , pp. 49-54
    • Chou, K.C.1    Jones, D.2    Heinrikson, R.L.3
  • 18
    • 33747197197 scopus 로고    scopus 로고
    • Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic k-nearest neighbor classifiers
    • KC Chou HB Shen 2006a Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic k-nearest neighbor classifiers J Proteome Res 5 1888 1897
    • (2006) J Proteome Res , vol.5 , pp. 1888-1897
    • Chou, K.C.1    Shen, H.B.2
  • 19
    • 33745759451 scopus 로고    scopus 로고
    • Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
    • KC Chou HB Shen 2006b Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization Biochem Biophys Res Commun 347 150 157
    • (2006) Biochem Biophys Res Commun , vol.347 , pp. 150-157
    • Chou, K.C.1    Shen, H.B.2
  • 20
    • 33748944288 scopus 로고    scopus 로고
    • Predicting protein subcellular location by fusing multiple classifiers
    • KC Chou HB Shen 2006c Predicting protein subcellular location by fusing multiple classifiers J Cell Biochem 99 517 527
    • (2006) J Cell Biochem , vol.99 , pp. 517-527
    • Chou, K.C.1    Shen, H.B.2
  • 21
    • 33846605183 scopus 로고    scopus 로고
    • Large-scale plant protein subcellular location prediction
    • KC Chou HB Shen 2007a Large-scale plant protein subcellular location prediction J Cell Biochem 100 665 678
    • (2007) J Cell Biochem , vol.100 , pp. 665-678
    • Chou, K.C.1    Shen, H.B.2
  • 22
    • 34249318001 scopus 로고    scopus 로고
    • Euk-mPLoc: A fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites
    • KC Chou HB Shen 2007b Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites J Proteome Res 6 1728 1734
    • (2007) J Proteome Res , vol.6 , pp. 1728-1734
    • Chou, K.C.1    Shen, H.B.2
  • 23
    • 34548606295 scopus 로고    scopus 로고
    • Review: Recent progresses in protein subcellular location prediction
    • doi: 10.1016/j.ab.2007.07.006
    • Chou KC, Shen HB (2007c) Review: recent progresses in protein subcellular location prediction. Anal Biochem doi: 10.1016/j.ab.2007.07.006
    • (2007) Anal Biochem
    • Chou, K.C.1    Shen, H.B.2
  • 24
    • 34247544233 scopus 로고    scopus 로고
    • Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
    • KC Chou HB Shen 2007d Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides Biochem Biophys Res Commun 357 633 640
    • (2007) Biochem Biophys Res Commun , vol.357 , pp. 633-640
    • Chou, K.C.1    Shen, H.B.2
  • 25
    • 34447095147 scopus 로고    scopus 로고
    • MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
    • KC Chou HB Shen 2007e MemType-2L: a Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM Biochem Biophys Res Commun 360 339 345
    • (2007) Biochem Biophys Res Commun , vol.360 , pp. 339-345
    • Chou, K.C.1    Shen, H.B.2
  • 26
    • 0034737556 scopus 로고    scopus 로고
    • Prediction of the tertiary structure of a caspase-9/inhibitor complex
    • KC Chou AG Tomasselli RL Heinrikson 2000 Prediction of the tertiary structure of a caspase-9/inhibitor complex FEBS Lett 470 249 256
    • (2000) FEBS Lett , vol.470 , pp. 249-256
    • Chou, K.C.1    Tomasselli, A.G.2    Heinrikson, R.L.3
  • 27
    • 0029157083 scopus 로고
    • Review: Prediction of protein structural classes
    • KC Chou CT Zhang 1995 Review: prediction of protein structural classes Crit Rev Biochem Mol 30 275 349
    • (1995) Crit Rev Biochem Mol , vol.30 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 28
    • 34249753618 scopus 로고
    • Support-vector networks
    • C Cortes V Vapnik 1995 Support-vector networks Mach Learn 20 273 297
    • (1995) Mach Learn , vol.20 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 29
    • 0035014847 scopus 로고    scopus 로고
    • Multi-class protein fold recognition using support vector machines and neural networks
    • CHQ Ding I Dubchak 2001 Multi-class protein fold recognition using support vector machines and neural networks Bioinformatics 17 349 358
    • (2001) Bioinformatics , vol.17 , pp. 349-358
    • Ding, C.H.Q.1    Dubchak, I.2
  • 30
    • 34548697717 scopus 로고    scopus 로고
    • Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network
    • YS Ding TL Zhang KC Chou 2007 Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network Protein Peptide Lett 14 811 815
    • (2007) Protein Peptide Lett , vol.14 , pp. 811-815
    • Ding, Y.S.1    Zhang, T.L.2    Chou, K.C.3
  • 31
    • 33846010187 scopus 로고    scopus 로고
    • Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence
    • P Du Y Li 2006 Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence BMC Bioinformatics 7 518
    • (2006) BMC Bioinformatics , vol.7 , pp. 518
    • Du, P.1    Li, Y.2
  • 32
    • 0034697980 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
    • O Emanuelsson H Nielsen S Brunak G Heijne 2000 Predicting subcellular localization of proteins based on their N-terminal amino acid sequence J Mol Biol 300 1005 1016
    • (2000) J Mol Biol , vol.300 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    Heijne, G.4
  • 33
    • 0036459850 scopus 로고    scopus 로고
    • An overview on predicting the subcellular location of a protein
    • ZP Feng 2002 An overview on predicting the subcellular location of a protein In Silico Biol 2 291 303
    • (2002) In Silico Biol , vol.2 , pp. 291-303
    • Feng, Z.P.1
  • 34
    • 17644389617 scopus 로고    scopus 로고
    • Support vector machine-based method for subcellular location of human proteins using amino acid compositions, their order and similarity search
    • A Garg M Bhasin GPS Raghava 2005 Support vector machine-based method for subcellular location of human proteins using amino acid compositions, their order and similarity search J Biol Chem 280 14427 14432
    • (2005) J Biol Chem , vol.280 , pp. 14427-14432
    • Garg, A.1    Bhasin, M.2    Raghava, G.P.S.3
  • 35
    • 21244494076 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein subcellular location: Approached with Lyapunov index, bessel function, and Chebyshev filter
    • Y Gao SH Shao X Xiao YS Ding YS Huang ZD Huang KC Chou 2005 Using pseudo amino acid composition to predict protein subcellular location: approached with Lyapunov index, bessel function, and Chebyshev filter Amino Acids 28 373 376
    • (2005) Amino Acids , vol.28 , pp. 373-376
    • Gao, Y.1    Shao, S.H.2    Xiao, X.3    Ding, Y.S.4    Huang, Y.S.5    Huang, Z.D.6    Chou, K.C.7
  • 36
    • 33745102264 scopus 로고    scopus 로고
    • Classifying G protein-coupled receptors and nuclear receptors based on protein power spectrum from fast Fourier transform
    • YZ Guo M Li M Lu Z Wen K Wang G Li J Wu 2006 Classifying G protein-coupled receptors and nuclear receptors based on protein power spectrum from fast Fourier transform Amino Acids 30 397 402
    • (2006) Amino Acids , vol.30 , pp. 397-402
    • Guo, Y.Z.1    Li, M.2    Lu, M.3    Wen, Z.4    Wang, K.5    Li, G.6    Wu, J.7
  • 37
    • 0000448982 scopus 로고
    • Prediction of protein antigenic determinants from amino acid sequences
    • TP Hopp KR Woods 1981 Prediction of protein antigenic determinants from amino acid sequences Proc Natl Acad Sci USA 78 3824 3828
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 3824-3828
    • Hopp, T.P.1    Woods, K.R.2
  • 38
    • 0034843744 scopus 로고    scopus 로고
    • Support vector machine approach for protein subcellular location prediction
    • SJ Hua ZR Sun 2001 Support vector machine approach for protein subcellular location prediction Bioinformatics 17 721 728
    • (2001) Bioinformatics , vol.17 , pp. 721-728
    • Hua, S.J.1    Sun, Z.R.2
  • 39
    • 0347093598 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations using fuzzy k-NN method
    • Y Huang Y Li 2004 Prediction of protein subcellular locations using fuzzy k-NN method Bioinformatics 20 21 28
    • (2004) Bioinformatics , vol.20 , pp. 21-28
    • Huang, Y.1    Li, Y.2
  • 40
    • 33846524311 scopus 로고    scopus 로고
    • Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant
    • H Lin QZ Li 2007a Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant Biochem Biophys Res Commun 354 548 551
    • (2007) Biochem Biophys Res Commun , vol.354 , pp. 548-551
    • Lin, H.1    Li, Q.Z.2
  • 41
    • 34249807035 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components
    • H Lin QZ Li 2007b Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components J Comput Chem 28 1463 1466
    • (2007) J Comput Chem , vol.28 , pp. 1463-1466
    • Lin, H.1    Li, Q.Z.2
  • 42
    • 34249051980 scopus 로고    scopus 로고
    • Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments
    • DQ Liu H Liu HB Shen J Yang KC Chou 2007 Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments Amino Acids 32 493 496
    • (2007) Amino Acids , vol.32 , pp. 493-496
    • Liu, D.Q.1    Liu, H.2    Shen, H.B.3    Yang, J.4    Chou, K.C.5
  • 43
    • 0016772212 scopus 로고
    • Comparison of predicted and observed secondary structure of T4 phage lysozyme
    • BW Matthews 1975 Comparison of predicted and observed secondary structure of T4 phage lysozyme Biochim Biophys Acta 405 442 451
    • (1975) Biochim Biophys Acta , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 44
    • 33749596030 scopus 로고    scopus 로고
    • Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification
    • S Mondal R Bhavna R Mohan Babu S Ramakumar 2006 Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification J Theor Biol 243 252 260
    • (2006) J Theor Biol , vol.243 , pp. 252-260
    • Mondal, S.1    Bhavna, R.2    Mohan Babu, R.3    Ramakumar, S.4
  • 45
    • 0027105007 scopus 로고
    • A knowledge base for predicting protein localization sites in eukaryotic cells
    • K Nakai M Kanehisa 1992 A knowledge base for predicting protein localization sites in eukaryotic cells Genomics 14 897 911
    • (1992) Genomics , vol.14 , pp. 897-911
    • Nakai, K.1    Kanehisa, M.2
  • 47
    • 0141515750 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs
    • KJ Park M Kanehisa 2003 Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs Bioinformatics 19 1656 1663
    • (2003) Bioinformatics , vol.19 , pp. 1656-1663
    • Park, K.J.1    Kanehisa, M.2
  • 49
    • 0032077533 scopus 로고    scopus 로고
    • Using neural networks for prediction of the subcellular location of proteins
    • A Reinhardt T Hubbard 1998 Using neural networks for prediction of the subcellular location of proteins Nucleic Acids Res 26 2230 2236
    • (1998) Nucleic Acids Res , vol.26 , pp. 2230-2236
    • Reinhardt, A.1    Hubbard, T.2
  • 50
    • 34249074523 scopus 로고    scopus 로고
    • Using ensemble classifier to identify membrane protein types
    • HB Shen KC Chou 2007a Using ensemble classifier to identify membrane protein types Amino Acids 32 483 488
    • (2007) Amino Acids , vol.32 , pp. 483-488
    • Shen, H.B.1    Chou, K.C.2
  • 51
    • 33847668306 scopus 로고    scopus 로고
    • Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
    • HB Shen KC Chou 2007b Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites Biochem Biophys Res Commun 355 1006 1011
    • (2007) Biochem Biophys Res Commun , vol.355 , pp. 1006-1011
    • Shen, H.B.1    Chou, K.C.2
  • 52
    • 33847260136 scopus 로고    scopus 로고
    • Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
    • HB Shen KC Chou 2007c Virus-PLoc: a fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells Biopolymers 85 233 240
    • (2007) Biopolymers , vol.85 , pp. 233-240
    • Shen, H.B.1    Chou, K.C.2
  • 53
    • 33847637338 scopus 로고    scopus 로고
    • Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction
    • HB Shen J Yang KC Chou 2007a Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction Amino Acids 33 57 67
    • (2007) Amino Acids , vol.33 , pp. 57-67
    • Shen, H.B.1    Yang, J.2    Chou, K.C.3
  • 54
    • 34548357153 scopus 로고    scopus 로고
    • Review: Methodology development for predicting subcellular localization and other attributes of proteins
    • HB Shen J Yang KC Chou 2007b Review: methodology development for predicting subcellular localization and other attributes of proteins Expert Rev Proteomic 4 453 463
    • (2007) Expert Rev Proteomic , vol.4 , pp. 453-463
    • Shen, H.B.1    Yang, J.2    Chou, K.C.3
  • 55
    • 34447106453 scopus 로고    scopus 로고
    • Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition
    • JY Shi SW Zhang Q Pan YM Cheng J Xie 2007 Prediction of protein subcellular localization by support vector machines using multi-scale energy and pseudo amino acid composition Amino Acids 33 69 74
    • (2007) Amino Acids , vol.33 , pp. 69-74
    • Shi, J.Y.1    Zhang, S.W.2    Pan, Q.3    Cheng, Y.M.4    Xie, J.5
  • 56
    • 33745093400 scopus 로고    scopus 로고
    • Prediction of protein structural classes using support vector machines
    • XD Sun RB Huang 2006 Prediction of protein structural classes using support vector machines Amino Acids 30 469 475
    • (2006) Amino Acids , vol.30 , pp. 469-475
    • Sun, X.D.1    Huang, R.B.2
  • 57
    • 0038519321 scopus 로고
    • Contribution of hydrophobic interactions to the stability of the globular conformation of proteins
    • C Tanford 1962 Contribution of hydrophobic interactions to the stability of the globular conformation of proteins J Am Chem Soc 84 4240 4247
    • (1962) J Am Chem Soc , vol.84 , pp. 4240-4247
    • Tanford, C.1
  • 58
    • 21244494465 scopus 로고    scopus 로고
    • Using string kernel to predict signal peptide cleavage site based on subsite coupling model
    • (Erratum, ibid. 2005, 29: 301)
    • Wang M, Yang J, Chou KC (2005) Using string kernel to predict signal peptide cleavage site based on subsite coupling model. Amino Acids (Erratum, ibid. 2005, 29: 301) 28, 395-402
    • (2005) Amino Acids , vol.28 , pp. 395-402
    • Wang, M.1    Yang, J.2    Chou, K.C.3
  • 59
    • 33846655685 scopus 로고    scopus 로고
    • Delaunay triangulation with partial least squares projection to latent structures: A model for G-protein coupled receptors classification and fast structure recognition
    • Z Wen M Li Y Li Y Guo K Wang 2007 Delaunay triangulation with partial least squares projection to latent structures: a model for G-protein coupled receptors classification and fast structure recognition Amino Acids 32 277 283
    • (2007) Amino Acids , vol.32 , pp. 277-283
    • Wen, Z.1    Li, M.2    Li, Y.3    Guo, Y.4    Wang, K.5
  • 60
    • 15244350269 scopus 로고    scopus 로고
    • Using complexity measure factor to predict protein subcellular location
    • X Xiao S Shao Y Ding Z Huang Y Huang KC Chou 2005 Using complexity measure factor to predict protein subcellular location Amino Acids 28 57 61
    • (2005) Amino Acids , vol.28 , pp. 57-61
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Huang, Y.5    Chou, K.C.6
  • 61
    • 32944461574 scopus 로고    scopus 로고
    • Using cellular automata images and pseudo amino acid composition to predict protein subcellular location
    • X Xiao SH Shao YS Ding ZD Huang KC Chou 2006 Using cellular automata images and pseudo amino acid composition to predict protein subcellular location Amino Acids 30 49 54
    • (2006) Amino Acids , vol.30 , pp. 49-54
    • Xiao, X.1    Shao, S.H.2    Ding, Y.S.3    Huang, Z.D.4    Chou, K.C.5
  • 62
    • 20744453541 scopus 로고    scopus 로고
    • Biological applications of support vector machines
    • ZR Yang 2004 Biological applications of support vector machines Brief Bioinform 5 328 338
    • (2004) Brief Bioinform , vol.5 , pp. 328-338
    • Yang, Z.R.1
  • 63
    • 1942505330 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions
    • CS Yu CJ Lin JK Huwang 2004 Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions Protein Sci 13 1402 1406
    • (2004) Protein Sci , vol.13 , pp. 1402-1406
    • Yu, C.S.1    Lin, C.J.2    Huwang, J.K.3
  • 64
    • 33745076136 scopus 로고    scopus 로고
    • Prediction protein homo-oligomer types by pseudo amino acid composition: Approached with an improved feature extraction and naive Bayes feature fusion
    • SW Zhang Q Pan HC Zhang ZC Shao JY Shi 2006 Prediction protein homo-oligomer types by pseudo amino acid composition: approached with an improved feature extraction and naive Bayes feature fusion Amino Acids 30 461 468
    • (2006) Amino Acids , vol.30 , pp. 461-468
    • Zhang, S.W.1    Pan, Q.2    Zhang, H.C.3    Shao, Z.C.4    Shi, J.Y.5
  • 65
    • 36448935288 scopus 로고    scopus 로고
    • Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes
    • doi: 10.1007/s00726-007-0496-1
    • Zhang TL, Ding YS (2007) Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes. Amino Acids, doi: 10.1007/s00726-007-0496-1
    • (2007) Amino Acids
    • Zhang, T.L.1    Ding, Y.S.2
  • 66
    • 35348888133 scopus 로고    scopus 로고
    • Prediction of the subcellular location of apoptosis-related proteins with encoding based on grouped weight for protein sequence
    • ZH Zhang ZH Wang YX Wang 2006a Prediction of the subcellular location of apoptosis-related proteins with encoding based on grouped weight for protein sequence Acta Biophys Sin 22 275 282
    • (2006) Acta Biophys Sin , vol.22 , pp. 275-282
    • Zhang, Z.H.1    Wang, Z.H.2    Wang, Y.X.3
  • 67
    • 33750528233 scopus 로고    scopus 로고
    • A novel method for apoptosis protein subcellular localization prediction combing encoding based on grouped weight and support vector machine
    • ZH Zhang ZH Wang ZR Zhang YX Wang 2006b A novel method for apoptosis protein subcellular localization prediction combing encoding based on grouped weight and support vector machine FEBS Lett 580 6169 6174
    • (2006) FEBS Lett , vol.580 , pp. 6169-6174
    • Zhang, Z.H.1    Wang, Z.H.2    Zhang, Z.R.3    Wang, Y.X.4
  • 68
    • 54749084166 scopus 로고    scopus 로고
    • An intriguing controversy over protein structural class prediction
    • GP Zhou 1998 An intriguing controversy over protein structural class prediction J Protein Chem 17 729 738
    • (1998) J Protein Chem , vol.17 , pp. 729-738
    • Zhou, G.P.1
  • 69
    • 0035400226 scopus 로고    scopus 로고
    • Some insights into protein structural class prediction
    • GP Zhou N Assa-Munt 2001 Some insights into protein structural class prediction Proteins Struct Func Genet 44 57 59
    • (2001) Proteins Struct Func Genet , vol.44 , pp. 57-59
    • Zhou, G.P.1    Assa-Munt, N.2
  • 70
    • 0037233515 scopus 로고    scopus 로고
    • Subcellular location prediction of apoptosis proteins
    • GP Zhou K Doctor 2003 Subcellular location prediction of apoptosis proteins Proteins Struct Func Genet 50 44 48
    • (2003) Proteins Struct Func Genet , vol.50 , pp. 44-48
    • Zhou, G.P.1    Doctor, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.