-
1
-
-
0000501656
-
Information theory and an extension of the maximum likelihood principle
-
Petrov BN, Csaki F eds, Akademiai Kiado, Budapest, pp
-
Akaike, H. 1973. Information theory and an extension of the maximum likelihood principle. In: Petrov BN, Csaki F eds. 2nd international symposium on information theory. Akademiai Kiado, Budapest, pp. 267-81.
-
(1973)
2nd international symposium on information theory
, pp. 267-281
-
-
Akaike, H.1
-
2
-
-
0037187833
-
A mixture approach for the analysis of microarray gene expression data
-
Allison, D.B., Gadbury, G.L., Heo, M. et al. 2002. A mixture approach for the analysis of microarray gene expression data. Computational Statistics and Data Analysis, 39:1-20.
-
(2002)
Computational Statistics and Data Analysis
, vol.39
, pp. 1-20
-
-
Allison, D.B.1
Gadbury, G.L.2
Heo, M.3
-
3
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene change
-
Baldi, P. and Long, A.D. 2001. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene change. Bioinformatics, 17:509-19.
-
(2001)
Bioinformatics
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
4
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society, 57:289-300.
-
(1995)
Journal of the Royal Statistical Society
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
6
-
-
0038238080
-
Statistical methods for ranking differentially expressed genes
-
Broberg, P. 2003. Statistical methods for ranking differentially expressed genes. Genome Biology, 4(6):R41.
-
(2003)
Genome Biology
, vol.4
, Issue.6
-
-
Broberg, P.1
-
7
-
-
0042125511
-
Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer
-
Chang, J.C., Wooten, E.C., Tsimelzon, A. et al. 2003. Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer. Lancet., 362:362-9.
-
(2003)
Lancet
, vol.362
, pp. 362-369
-
-
Chang, J.C.1
Wooten, E.C.2
Tsimelzon, A.3
-
8
-
-
0031246430
-
Ratio-based decisions and the quantitative analysis of cDNA microarray images
-
Chen, Y., Dougherty, E.R. and Bittner, M.L. 1997. Ratio-based decisions and the quantitative analysis of cDNA microarray images. Journal of Biomedical Optics, 2:364-7.
-
(1997)
Journal of Biomedical Optics
, vol.2
, pp. 364-367
-
-
Chen, Y.1
Dougherty, E.R.2
Bittner, M.L.3
-
10
-
-
33846978784
-
Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting
-
Dupuy, A. and Simon, R.M. 2007. Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting. Journal of the National Cancer Institute, 99:147-57.
-
(2007)
Journal of the National Cancer Institute
, vol.99
, pp. 147-157
-
-
Dupuy, A.1
Simon, R.M.2
-
12
-
-
1542784653
-
Empirical bayes analysis of microarray experiment
-
Efron, B., Tibshirani, R., Storey, J.D. et al. 2001. Empirical bayes analysis of microarray experiment. Journal of the American Statistical Association, 456:1151-60.
-
(2001)
Journal of the American Statistical Association
, vol.456
, pp. 1151-1160
-
-
Efron, B.1
Tibshirani, R.2
Storey, J.D.3
-
13
-
-
25144463543
-
Sample-size for FDR-control in microarray data analysis
-
Jung, S. 2005. Sample-size for FDR-control in microarray data analysis. Bioinformatics, 21(14):3097-3014.
-
(2005)
Bioinformatics
, vol.21
, Issue.14
, pp. 3097-3014
-
-
Jung, S.1
-
14
-
-
33747877325
-
How accurately can we control the FDR in analyzing microarray data?
-
Jung, S. and Jang, W. 2006. How accurately can we control the FDR in analyzing microarray data? Bioinformatics, 22(14):1730-6.
-
(2006)
Bioinformatics
, vol.22
, Issue.14
, pp. 1730-1736
-
-
Jung, S.1
Jang, W.2
-
16
-
-
23244447197
-
Significance testing for small microarray experiments
-
Kooperberg, C., Aragaki, A., Strand, A.D. et al. 2005. Significance testing for small microarray experiments. Statistics in Medicine, 24:2281-98.
-
(2005)
Statistics in Medicine
, vol.24
, pp. 2281-2298
-
-
Kooperberg, C.1
Aragaki, A.2
Strand, A.D.3
-
17
-
-
0034730124
-
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
-
Lee, M., Kuo, F., Whitmore, G. et al. 2000. Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations. Proceedings of the National Academy of Sciences of the U.S.A., 97(18):9834-39.
-
(2000)
Proceedings of the National Academy of Sciences of the U.S.A
, vol.97
, Issue.18
, pp. 9834-9839
-
-
Lee, M.1
Kuo, F.2
Whitmore, G.3
-
20
-
-
49649104635
-
Gene Expression Omnibus. Breast cancer and docetaxel treatment
-
Accessed 9 April 2007. URL
-
National Center for Biotechnology Information, . Gene Expression Omnibus. Breast cancer and docetaxel treatment. Accession No: GDS360. Accessed 9 April 2007. URL: http://www.ncbi.nlm.nih.gov/geo/.
-
Accession No: GDS360
-
-
-
21
-
-
0034923013
-
On differential variability of expression ratios; improving statistical inference about gene expression changes from microarray data
-
Newton, M.A., Kendziorski, C.M., Richmond, C.S. et al. 2001. On differential variability of expression ratios; improving statistical inference about gene expression changes from microarray data. Journal of Computational Biology, 8:37-52.
-
(2001)
Journal of Computational Biology
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
-
22
-
-
0035999977
-
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
-
Pan, W. 2002. A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics, 18(4):546-56.
-
(2002)
Bioinformatics
, vol.18
, Issue.4
, pp. 546-556
-
-
Pan, W.1
-
23
-
-
0041592555
-
On the use of permutation in and the performance of a class of nonparametric methods to detect differential gene expression
-
Pan, W. 2003. On the use of permutation in and the performance of a class of nonparametric methods to detect differential gene expression. Bioinformatics, 19(11):1333-40.
-
(2003)
Bioinformatics
, vol.19
, Issue.11
, pp. 1333-1340
-
-
Pan, W.1
-
24
-
-
2142854576
-
A mixture model approach to detecting differentially expressed genes with microarray data
-
Pan, W., Lin, J. and Le, C. 2003. A mixture model approach to detecting differentially expressed genes with microarray data. Functional and Integrative Genomics, 3:117-24.
-
(2003)
Functional and Integrative Genomics
, vol.3
, pp. 117-124
-
-
Pan, W.1
Lin, J.2
Le, C.3
-
25
-
-
21444454257
-
False discovery rate, sensitivity and sample-size for microarray studies
-
Pawitan, Y., Michiels, S., Koscielny, S. et al. 2005. False discovery rate, sensitivity and sample-size for microarray studies. Bioinformatics, 21(13):3017-3024.
-
(2005)
Bioinformatics
, vol.21
, Issue.13
, pp. 3017-3024
-
-
Pawitan, Y.1
Michiels, S.2
Koscielny, S.3
-
26
-
-
27544510142
-
Bias in the estimation of false discovery rate in microarray studies
-
Pawitan, Y., Murthy, K., Michiels, S. et al. 2005. Bias in the estimation of false discovery rate in microarray studies. Bioinformatics, 21(20):3865-872.
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3865-3872
-
-
Pawitan, Y.1
Murthy, K.2
Michiels, S.3
-
27
-
-
33644858587
-
Multidimensional local false discovery rate for microarray data
-
Ploner, A., Calza, S., Gusnanto, A. et al. 2006. Multidimensional local false discovery rate for microarray data. Bioinformatics, 22(5):556-65.
-
(2006)
Bioinformatics
, vol.22
, Issue.5
, pp. 556-565
-
-
Ploner, A.1
Calza, S.2
Gusnanto, A.3
-
28
-
-
0038156106
-
Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-value
-
Pounds, S. and Morris, W.S. 2003. Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-value. Bioinformatics, 19(10):1236-42.
-
(2003)
Bioinformatics
, vol.19
, Issue.10
, pp. 1236-1242
-
-
Pounds, S.1
Morris, W.S.2
-
29
-
-
33747828250
-
Robust estimation of the false discovery rate
-
Pounds, S. and Cheng, C. 2006. Robust estimation of the false discovery rate. Bioinformatics, 22(16):1979-87.
-
(2006)
Bioinformatics
, vol.22
, Issue.16
, pp. 1979-1987
-
-
Pounds, S.1
Cheng, C.2
-
30
-
-
0037433040
-
Identifying differentially expressed genes using false discovery rate procedure
-
Reiner, A., Yekutieli, D. and Benjamini, Y. 2003. Identifying differentially expressed genes using false discovery rate procedure. Bioinformatics, 19(3):368-75.
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 368-375
-
-
Reiner, A.1
Yekutieli, D.2
Benjamini, Y.3
-
31
-
-
0029748326
-
Parallel genome human analysis: Microarray based-expression monitoring of 1000 genes
-
Schena, M., Sharon, D., Heller, R. et al. 1997. Parallel genome human analysis: Microarray based-expression monitoring of 1000 genes. Proceedings of the National Academy of Sciences of the U.S.A., 93(20):10614-9.
-
(1997)
Proceedings of the National Academy of Sciences of the U.S.A
, vol.93
, Issue.20
, pp. 10614-10619
-
-
Schena, M.1
Sharon, D.2
Heller, R.3
-
33
-
-
0034911875
-
An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles
-
Thomas, J., Olson, J., Tapscotto, S. et al. 2001. An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles. Genome Research, 11:1227-36.
-
(2001)
Genome Research
, vol.11
, pp. 1227-1236
-
-
Thomas, J.1
Olson, J.2
Tapscotto, S.3
-
34
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V., Tibshirani, R. and Chu, G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proceedings of the National Academy of Sciences of the U.S.A., 98(9):5116-21.
-
(2001)
Proceedings of the National Academy of Sciences of the U.S.A
, vol.98
, Issue.9
, pp. 5116-5121
-
-
Tusher, V.1
Tibshirani, R.2
Chu, G.3
-
35
-
-
33748780360
-
Parametric and nonparametric FDR estimation revisited
-
Wu, B., Guan, Z. and Zhao, H. 2006. Parametric and nonparametric FDR estimation revisited. Biometrics, 62:735-44.
-
(2006)
Biometrics
, vol.62
, pp. 735-744
-
-
Wu, B.1
Guan, Z.2
Zhao, H.3
-
36
-
-
28444438861
-
A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
-
Xie, Y., Pan, W. and Khodursky, A.B. 2005. A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data. Bioinformatics, 21:4280-8.
-
(2005)
Bioinformatics
, vol.21
, pp. 4280-4288
-
-
Xie, Y.1
Pan, W.2
Khodursky, A.B.3
-
37
-
-
0038053155
-
Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray data
-
Zhao, Y. and Pan, W. 2003. Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray data. Bioinformatics, 19(9):1046-54.
-
(2003)
Bioinformatics
, vol.19
, Issue.9
, pp. 1046-1054
-
-
Zhao, Y.1
Pan, W.2
|