Isolation and characterization of ribosomes and translation initiation factors from the gram-positive soil bacterium Streptomyces lividans

Journal of Bacteriology

Volumn 186, Issue 20, 2004, Pages 6864-6875

  Day, J Michael ^a,b   Janssen, Gary R ^a  

^a MIAMI UNIVERSITY   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INITIATION FACTOR; INITIATION FACTOR 1; INITIATION FACTOR 2; INITIATION FACTOR 3; MESSENGER RNA; TRANSFER RNA;

70S RIBOSOME SUBUNIT; APH GENE; APH LEADERLESS GENE; ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATE; ESCHERICHIA COLI; INFA GENE; INFB GENE; INFC GENE; MALE GENE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN INTERACTION; PROTEIN ISOLATION; RIBOSOME; RIBOSOME SUBUNIT; STREPTOMYCES LIVIDANS; STREPTOMYCETACEAE;

BASE SEQUENCE; GENETIC TECHNIQUES; MOLECULAR SEQUENCE DATA; PEPTIDE CHAIN INITIATION, TRANSLATIONAL; PROKARYOTIC INITIATION FACTORS; PROTEIN BIOSYNTHESIS; RIBOSOMAL PROTEINS; RIBOSOMES; RNA, BACTERIAL; RNA, MESSENGER; SOIL MICROBIOLOGY; STREPTOMYCES;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; POSIBACTERIA; STREPTOMYCES; STREPTOMYCES LIVIDANS; STREPTOMYCETACEAE;

EID: 4944254288     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.186.20.6864-6875.2004     Document Type: Article

References (25)

1. Calcutt, M. J., and E. Cundliffe. 1989. Use of a fractionated, coupled transcription-translation system in the study of ribosomal resistance mechanisms in antibiotic-producing Streptomyces. J. Gen. Microbiol. 135:1071-1081.
2. Christie, G. E., and R. Calendar. 1985. Bacteriophage P2 late promoters II. Comparison of the four late promoter sequences. J. Mol. Biol. 181:373-382.
3. Dubnoff, J. S., and U. Maitra. 1971. Isolation and properties of protein factors involved in polypeptide chain initiation in Escherichia coli. Methods Enzymol. 20:248-260.
4. Godefroy-Colburn, T., A. D. Wolfe, J. Dondon, M. Grunberg-Manago, P. Dessen, and D. Pantaloni. 1975. Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes. J. Mol. Biol. 94:461-478.
5. Grill, S., C. O. Gualerzi, P. Londei, and U. Blasi. 2000. Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translation. EMBO J. 19:1-10.
6. Grill, S., I. Moll, D. Hasenohrl, C. O. Gualerzi, U. Blasi. 2001. Modulation of ribosomal recruitment to 5′-terminal start codons by translation initiation factors IF2 and IF3. FEBS Lett. 495:167-171.
7. Gualerzi, C. O., L. Brandi, E. Caserta, A. La Teana, R. Spurio, J. Tomšic, and C. L. Pon. 2000. Translation initiation in bacteria, p. 477-494. In R. A. Garrett, S. R. Douthwaite, A. Liljas, A. T. Matheson, P. B. Moore, and H. F. Noller (ed.), The ribosome: structure, function, antibiotics, and cellular interactions. ASM Press, Washington, D.C.
8. Gualerzi, C. O., and C. L. Pon. 1990. Initiation of mRNA translation in prokaryotes. Biochemistry 29:5881-5889.
9. Hartz, D., D. S. McPheeters, R. Traut, and L. Gold. 1988. Extension inhibition analysis of translation initiation complexes. Methods Enzymol. 164:419-425.
10. Janssen, G. R. 1993. Eubacterial, archaeabacterial, and eucaryotic genes that encode leaderless mRNA, p. 59-67. In B. H. Balt, G. D. Hegema, and P.L. Skatrud (ed.), Industrial microorganisms: basic and applied molecular genetics. American Society for Microbiology, Washington, D.C.
11. Klock, G., and W. Hillen. 1986. Expression, purification and operator binding of the transposon Tn1721-encoded Tet represser. J. Mol. Biol. 189:633-641.
12. Martin-Farmer, J., and G. R. Janssen. 1999. A downstream CA repeat sequence increases translation from leadered and unleadered mRNA in Escherichia coli. Mol. Microbiol. 31:1025-1038.
13. O'Donnell, S. M., and G. R. Janssen. 2001. The initiation codon affects ribosome binding and translational efficiency in Escherichia coli of cI mRNA with or without the 5′ untranslated leader. J. Bacteriol. 183:1277-1283.
14. O'Donnell, S. M., and G. R. Janssen. 2002. Leaderless mRNAs bind 70S ribosomes more strongly than 30S ribosomal subunits in Escherichia coli. J. Bacteriol. 184:6730-6733.
15. Petrelli, D., A. La Teana, C. Garolo, R. Spurio, C. L. Po, and C. O. Gualerzi. 2001. Translation initiation factor IF3: two domains, five functions, one mechanism. EMBO J. 20:4560-4569.
16. Petrelli, D., C. Garofalo, M. Lammil, R. Spurio, C. L. Po, C. O. Gualerz, and A. La Teana. 2003. Mapping the active sites of bacterial translation initiation factor IF3. J. Mol. Biol. 331:541-556.
17. Ptashne, M., K. Backman, M. Z. Humayum, A. Jeffery, R. Maurer, B. Meyer, and R. T. Sauer. 1976. Autoregulation and function of a represser in bacteriophage lambda. Science 194:156-161.
18. Ramesh, V., S. Gite, and U. L. RajBhandary. 1998. Functional interaction of an arginine conserved in the sixteen amino acid insertion module of Escherichia coli methionyl-tRNA formyltransferase with determinants for formylation in the initiator tRNA. Biochemistry 37:15925-15932.
19. Sette, M., R. Spurio, P. van Tilborg, C. O. Gualerz, and R. Boelens. 1999. Identification of the ribosome binding sites of translation initiation factor IF3 by multidimensional heteronuclear NMR spectroscopy. RNA 5:82-92.
20. Soffentini, A., R. Lorenzetti, L. Gastaldo, J. H. Parlett, R. Spurio, A. La Teana, and K. Islam. 1994. Purification procedures for bacterial translational initiation factors IF2 and IF3. Protein Expr. Purif. 5:118-124.
21. Tedin, K., I. Moll, S. Grill, A. Resch, C. O. Gualerz, and U. Blasi. 1999. Translation initiation factor 3 antagonizes authentic start codon selection on leaderless mRNAs. Mol. Microbiol. 31:67-77.
22. Van Etten, W. J., and G. R. Janssen. 1998. An AUG initiation codon, not codon-anticodon complementarity, is required for the translation of unleadered mRNA in Escherichia coli. Mol. Microbiol. 27:987-1001.
23. van Wezel, G. P., J. White, M. J. Bibb, and P. W. Postma. 1997. The malEFG gene cluster of Streptomyces coelicolor A3(2): characterization, disruption and transcriptional analysis. Mol. Gen. Genet. 254:604-608.
24. Wu, C.-J., and G. R. Janssen. 1996. Translation of vph mRNA in Streptomyces lividans and Escherichia coli after removal of the 5′ untranslated leader. Mol. Microbiol. 22:339-355.
25. Wu, C.-J., and G. R. Janssen. 1997. Expression of a streptomycete leaderless mRNA encoding chloramphenicol acetyltransferase in Escherichia coli. J. Bacteriol. 179:6824-6830.