-
1
-
-
0028865843
-
3D domain swapping: a mechanism for oligomer assembly
-
Bennett M.J., Schlunegger M.P., and Eisenberg D. 3D domain swapping: a mechanism for oligomer assembly. Protein Sci 4 (1995) 2455-2468
-
(1995)
Protein Sci
, vol.4
, pp. 2455-2468
-
-
Bennett, M.J.1
Schlunegger, M.P.2
Eisenberg, D.3
-
2
-
-
0036108484
-
3D domain swapping: as domains continue to swap
-
Liu Y., and Eisenberg D. 3D domain swapping: as domains continue to swap. Protein Sci. 11 (2002) 1285
-
(2002)
Protein Sci.
, vol.11
, pp. 1285
-
-
Liu, Y.1
Eisenberg, D.2
-
3
-
-
33646375442
-
Deposition diseases and 3D domain swapping
-
Bennett M.J., Sawaya M.R., and Eisenberg D. Deposition diseases and 3D domain swapping. Structure 14 (2006) 811-824
-
(2006)
Structure
, vol.14
, pp. 811-824
-
-
Bennett, M.J.1
Sawaya, M.R.2
Eisenberg, D.3
-
4
-
-
0347914553
-
Insights into conformation and dynamics of protein GB1 during folding and unfolding by NMR
-
Ding K., Louis J.M., and Gronenborn A.M. Insights into conformation and dynamics of protein GB1 during folding and unfolding by NMR. J. Mol. Biol. 335 (2004) 1299-1307
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 1299-1307
-
-
Ding, K.1
Louis, J.M.2
Gronenborn, A.M.3
-
5
-
-
4644301408
-
Domain swapping is a consequence of minimal frustration
-
Yang S., Cho S.S., Levy Y., Cheung M.S., Levine H., Wolynes P.G., and Onuchic J.N. Domain swapping is a consequence of minimal frustration. Proc. Natl Acad. Sci. USA 101 (2004) 13786-13791
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 13786-13791
-
-
Yang, S.1
Cho, S.S.2
Levy, Y.3
Cheung, M.S.4
Levine, H.5
Wolynes, P.G.6
Onuchic, J.N.7
-
6
-
-
0035826713
-
Three-dimensional domain swapping in p13suc1 occurs in the unfolded state and is controlled by conserved proline residues
-
Rousseau F., Schymkowitz J.W.H., Wilkinson H.R., and Itzhaki L.S. Three-dimensional domain swapping in p13suc1 occurs in the unfolded state and is controlled by conserved proline residues. Proc. Natl Acad. Sci. USA 98 (2001) 5596
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 5596
-
-
Rousseau, F.1
Schymkowitz, J.W.H.2
Wilkinson, H.R.3
Itzhaki, L.S.4
-
7
-
-
17144424217
-
The role of the hinge loop in domain swapping
-
Picone D., Di Fiore A., Ercole C., Franzese M., Sica F., Tomaselli S., and Mazzarella L. The role of the hinge loop in domain swapping. J. Biol. Chem. 280 (2005) 13771
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 13771
-
-
Picone, D.1
Di Fiore, A.2
Ercole, C.3
Franzese, M.4
Sica, F.5
Tomaselli, S.6
Mazzarella, L.7
-
8
-
-
0031569328
-
Proline-dependent oligomerization with arm exchange
-
Bergdoll M., Remy M.H., Cagnon C., Masson J.M., and Dumas P. Proline-dependent oligomerization with arm exchange. Structure 5 (1997) 391-401
-
(1997)
Structure
, vol.5
, pp. 391-401
-
-
Bergdoll, M.1
Remy, M.H.2
Cagnon, C.3
Masson, J.M.4
Dumas, P.5
-
9
-
-
0037337270
-
The unfolding story of three-dimensional domain swapping
-
Rousseau F., Schymkowitz J.W.H., and Itzhaki L.S. The unfolding story of three-dimensional domain swapping. Structure 11 (2003) 243-251
-
(2003)
Structure
, vol.11
, pp. 243-251
-
-
Rousseau, F.1
Schymkowitz, J.W.H.2
Itzhaki, L.S.3
-
10
-
-
0022545967
-
Gene for an immunoglobulin-binding protein from a group G streptococcus
-
Fahnestock S.R., Alexander P., Nagle J., and Filpula D. Gene for an immunoglobulin-binding protein from a group G streptococcus. J. Bacteriol. 167 (1986) 870-880
-
(1986)
J. Bacteriol.
, vol.167
, pp. 870-880
-
-
Fahnestock, S.R.1
Alexander, P.2
Nagle, J.3
Filpula, D.4
-
11
-
-
0141569110
-
A protein contortionist: core mutations of GB1 that induce dimerization and domain swapping
-
Byeon I.J., Louis J.M., and Gronenborn A.M. A protein contortionist: core mutations of GB1 that induce dimerization and domain swapping. J. Mol. Biol. 333 (2003) 141-152
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 141-152
-
-
Byeon, I.J.1
Louis, J.M.2
Gronenborn, A.M.3
-
13
-
-
2942755921
-
A captured folding intermediate involved in dimerization and domain-swapping of GB1
-
Byeon I.J., Louis J.M., and Gronenborn A.M. A captured folding intermediate involved in dimerization and domain-swapping of GB1. J. Mol. Biol. 340 (2004) 615-625
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 615-625
-
-
Byeon, I.J.1
Louis, J.M.2
Gronenborn, A.M.3
-
14
-
-
17144382523
-
The GB1 amyloid fibril: recruitment of the peripheral beta-strands of the domain swapped dimer into the polymeric interface
-
Louis J.M., Byeon I.J., Baxa U., and Gronenborn A.M. The GB1 amyloid fibril: recruitment of the peripheral beta-strands of the domain swapped dimer into the polymeric interface. J. Mol. Biol. 348 (2005) 687-698
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 687-698
-
-
Louis, J.M.1
Byeon, I.J.2
Baxa, U.3
Gronenborn, A.M.4
-
15
-
-
0041810451
-
Efficient exploration of reactive potential energy surfaces using Car-Parrinello molecular dynamics
-
Iannuzzi M., Laio A., and Parrinello M. Efficient exploration of reactive potential energy surfaces using Car-Parrinello molecular dynamics. Phys. Rev. Lett. 90 (2003) 238302
-
(2003)
Phys. Rev. Lett.
, vol.90
, pp. 238302
-
-
Iannuzzi, M.1
Laio, A.2
Parrinello, M.3
-
16
-
-
0000191981
-
Reaction path study of conformational transitions in flexible systems: applications to peptides
-
Czerminski R., and Elber R. Reaction path study of conformational transitions in flexible systems: applications to peptides. J. Chem. Phys. 92 (1990) 5580
-
(1990)
J. Chem. Phys.
, vol.92
, pp. 5580
-
-
Czerminski, R.1
Elber, R.2
-
18
-
-
44949109198
-
Role of the amino acid sequence in domain swapping of the B1 domain of protein G
-
Sirota F.L., Hery-Huynh S., Maurer-Stroh S., and Wodak S.J. Role of the amino acid sequence in domain swapping of the B1 domain of protein G. Proteins 72 (2008) 88-104
-
(2008)
Proteins
, vol.72
, pp. 88-104
-
-
Sirota, F.L.1
Hery-Huynh, S.2
Maurer-Stroh, S.3
Wodak, S.J.4
-
19
-
-
36749006579
-
-
Lensink, M. F., Mendez, R. & Wodak, S. J. (2007). Docking and Scoring Protein Complexes: CAPRI, 3rd edit. Proteins, 69, 704-718.
-
Lensink, M. F., Mendez, R. & Wodak, S. J. (2007). Docking and Scoring Protein Complexes: CAPRI, 3rd edit. Proteins, 69, 704-718.
-
-
-
-
20
-
-
19944406574
-
Dynamics of entangled polymer solutions: I. The Rouse model
-
De Gennes P.G. Dynamics of entangled polymer solutions: I. The Rouse model. Macromolecules 9 (1976) 587-593
-
(1976)
Macromolecules
, vol.9
, pp. 587-593
-
-
De Gennes, P.G.1
-
22
-
-
0029124248
-
Molten globule and protein folding
-
Ptitsyn O.B. Molten globule and protein folding. Adv. Protein Chem. 47 (1995) 83-229
-
(1995)
Adv. Protein Chem.
, vol.47
, pp. 83-229
-
-
Ptitsyn, O.B.1
-
23
-
-
0034682869
-
Automatic protein design with all atom force-fields by exact and heuristic optimization
-
Wernisch L., Hery S., and Wodak S.J. Automatic protein design with all atom force-fields by exact and heuristic optimization. J. Mol. Biol. 301 (2000) 713-736
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 713-736
-
-
Wernisch, L.1
Hery, S.2
Wodak, S.J.3
-
24
-
-
0025769350
-
A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G
-
Gronenborn A.M., Filpula D.R., Essig N.Z., Achari A., Whitlow M., Wingfield P.T., and Clore G.M. A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G. Science 253 (1991) 657-661
-
(1991)
Science
, vol.253
, pp. 657-661
-
-
Gronenborn, A.M.1
Filpula, D.R.2
Essig, N.Z.3
Achari, A.4
Whitlow, M.5
Wingfield, P.T.6
Clore, G.M.7
-
25
-
-
0032867418
-
Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing
-
Park S.H., Shastry M.C., and Roder H. Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing. Nat. Struct. Biol. 6 (1999) 943-947
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 943-947
-
-
Park, S.H.1
Shastry, M.C.2
Roder, H.3
-
26
-
-
0028500779
-
A short linear peptide that folds into a native stable bold beta-hairpin in aqueous solution
-
Blanco F.J., Rivas G., and Serrano L. A short linear peptide that folds into a native stable bold beta-hairpin in aqueous solution. Nat. Struct. Biol. 1 (1994) 584-590
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 584-590
-
-
Blanco, F.J.1
Rivas, G.2
Serrano, L.3
-
27
-
-
0028877368
-
Crystal structure of the cell cycle-regulatory protein suc1 reveals a beta-hinge conformational switch
-
Bourne Y., Arvai A.S., Bernstein S.L., Watson M.H., Reed S.I., Endicott J.E., et al. Crystal structure of the cell cycle-regulatory protein suc1 reveals a beta-hinge conformational switch. Proc. Natl Acad. Sci. USA 92 (1995) 10232-10236
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 10232-10236
-
-
Bourne, Y.1
Arvai, A.S.2
Bernstein, S.L.3
Watson, M.H.4
Reed, S.I.5
Endicott, J.E.6
-
28
-
-
0035190116
-
Single-site mutations induce 3D domain swapping in the B1 domain of protein l from Peptostreptococcus magnus
-
O'Neill J.W., Kim D.E., Johnsen K., Baker D., and Zhang K.Y.J. Single-site mutations induce 3D domain swapping in the B1 domain of protein l from Peptostreptococcus magnus. Structure 9 (2001) 1017-1027
-
(2001)
Structure
, vol.9
, pp. 1017-1027
-
-
O'Neill, J.W.1
Kim, D.E.2
Johnsen, K.3
Baker, D.4
Zhang, K.Y.J.5
-
29
-
-
0032573520
-
Stability and folding of the cell cycle regulatory protein, p13(suc1)
-
Rousseau F., Schymkowitz J.W., Sanchez del Pino M., and Itzhaki L.S. Stability and folding of the cell cycle regulatory protein, p13(suc1). J. Mol. Biol. 284 (1998) 503-519
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 503-519
-
-
Rousseau, F.1
Schymkowitz, J.W.2
Sanchez del Pino, M.3
Itzhaki, L.S.4
-
30
-
-
0036424666
-
Structural basis of macromolecular recognition
-
Wodak S.J., and Janin J. Structural basis of macromolecular recognition. Adv. Protein Chem. 61 (2002) 9-73
-
(2002)
Adv. Protein Chem.
, vol.61
, pp. 9-73
-
-
Wodak, S.J.1
Janin, J.2
-
32
-
-
0034869693
-
Crystal structure of the human prion protein reveals a mechanism for oligomerization
-
Knaus K.J., Morillas M., Swietnicki W., Malone M., Surewicz W.K., and Yee V.C. Crystal structure of the human prion protein reveals a mechanism for oligomerization. Nat. Struct. Biol. 8 (2001) 770-774
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 770-774
-
-
Knaus, K.J.1
Morillas, M.2
Swietnicki, W.3
Malone, M.4
Surewicz, W.K.5
Yee, V.C.6
-
33
-
-
0026511656
-
The folding of an enzyme: I. Theory of protein engineering analysis of stability and pathway of protein folding
-
Fersht A.R., Matouschek A., and Serrano L. The folding of an enzyme: I. Theory of protein engineering analysis of stability and pathway of protein folding. J. Mol. Biol. 224 (1992) 771-782
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
34
-
-
0001563899
-
Free-energy of ionic hydration-analysis of a thermodynamic integration technique to evaluate free-energy differences by molecular-dynamics simulations
-
Straatsma T.P., and Berendsen H.J.C. Free-energy of ionic hydration-analysis of a thermodynamic integration technique to evaluate free-energy differences by molecular-dynamics simulations. J. Chem. Phys. 89 (1988) 5876-5886
-
(1988)
J. Chem. Phys.
, vol.89
, pp. 5876-5886
-
-
Straatsma, T.P.1
Berendsen, H.J.C.2
-
35
-
-
84986512474
-
CHARMM-a program for macromolecular energy, minimization, and dynamics calculations
-
Brooks B.R., Bruccoleri R.E., Olafson B.D., States D.J., Swaminathan S., and Karplus M. CHARMM-a program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4 (1983) 187-217
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
37
-
-
0141956090
-
Generalized Born model with a simple smoothing function
-
Im W., Lee M.S., and Brooks III C.L. Generalized Born model with a simple smoothing function. J. Comput. Chem. 24 (2003) 1691-1702
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1691-1702
-
-
Im, W.1
Lee, M.S.2
Brooks III, C.L.3
-
38
-
-
0023338543
-
Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides
-
Ooi T., Oobatake M., Nemethy G., and Scheraga H.A. Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides. Proc. Natl Acad. Sci. USA 84 (1987) 3086-3090
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 3086-3090
-
-
Ooi, T.1
Oobatake, M.2
Nemethy, G.3
Scheraga, H.A.4
|