-
1
-
-
0024203966
-
On the role of homologous sequences in chromosomal rearrangements
-
Singer B.S. On the role of homologous sequences in chromosomal rearrangements. Genes Dev. 2 (1988) 1800-1811
-
(1988)
Genes Dev.
, vol.2
, pp. 1800-1811
-
-
Singer, B.S.1
-
2
-
-
0033759525
-
Gene conversion drives within genic sequences: concerted evolution of ribosomal RNA genes in bacteria and Archaea
-
Liao D. Gene conversion drives within genic sequences: concerted evolution of ribosomal RNA genes in bacteria and Archaea. J. Mol. Evol. 51 (2000) 305-317
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 305-317
-
-
Liao, D.1
-
3
-
-
0035054879
-
Gene conversions in genes encoding outer-membrane proteins in H. pylori and C. pneumoniae
-
Jordan I.K., Makarova K.S., Wolf Y.I., and Koonin E.V. Gene conversions in genes encoding outer-membrane proteins in H. pylori and C. pneumoniae. Trends Genet. 17 (2001) 7-10
-
(2001)
Trends Genet.
, vol.17
, pp. 7-10
-
-
Jordan, I.K.1
Makarova, K.S.2
Wolf, Y.I.3
Koonin, E.V.4
-
4
-
-
0036303443
-
Concerted evolution between duplicated genetic elements in Helicobacter pylori
-
Pride D.T., and Blaser M.J. Concerted evolution between duplicated genetic elements in Helicobacter pylori. J. Mol. Biol. 316 (2002) 629-642
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 629-642
-
-
Pride, D.T.1
Blaser, M.J.2
-
5
-
-
0037309169
-
Rates and consequences of recombination between rRNA operons
-
Hashimoto J.G., Stevenson B.S., and Schmidt T.M. Rates and consequences of recombination between rRNA operons. J. Bacteriol. 185 (2003) 966-972
-
(2003)
J. Bacteriol.
, vol.185
, pp. 966-972
-
-
Hashimoto, J.G.1
Stevenson, B.S.2
Schmidt, T.M.3
-
6
-
-
15944412560
-
Gene conversion and concerted evolution in bacterial genomes
-
Santoyo G., and Romero D. Gene conversion and concerted evolution in bacterial genomes. FEMS Microbiol. Rev. 29 (2005) 169-183
-
(2005)
FEMS Microbiol. Rev.
, vol.29
, pp. 169-183
-
-
Santoyo, G.1
Romero, D.2
-
7
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner F.R., et al. The complete genome sequence of Escherichia coli K-12. Science 277 (1997) 1453-1474
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
-
8
-
-
0035961748
-
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
-
Hayashi T., et al. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8 (2001) 11-22
-
(2001)
DNA Res.
, vol.8
, pp. 11-22
-
-
Hayashi, T.1
-
9
-
-
0035945586
-
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
-
Perna N.T., et al. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature 409 (2001) 529-533
-
(2001)
Nature
, vol.409
, pp. 529-533
-
-
Perna, N.T.1
-
10
-
-
0037168538
-
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
-
Welch R.A., et al. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. USA 99 (2002) 17020-17024
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 17020-17024
-
-
Welch, R.A.1
-
11
-
-
3543051830
-
Mauve: multiple alignment of conserved genomic sequence with rearrangements
-
Darling A.C., Mau B., Blattner F.R., and Perna N.T. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14 (2004) 1394-1403
-
(2004)
Genome Res.
, vol.14
, pp. 1394-1403
-
-
Darling, A.C.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
12
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman H., Lawrence J.G., and Groisman E.A. Lateral gene transfer and the nature of bacterial innovation. Nature 405 (2000) 299-304
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
13
-
-
4544321685
-
Phages and the evolution of bacterial pathogens from genomic rearrangements to lysogenic conversion
-
Brüssow H., Canchaya C., and Hardt W.D. Phages and the evolution of bacterial pathogens from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Biol. Rev. 68 (2004) 560-602
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 560-602
-
-
Brüssow, H.1
Canchaya, C.2
Hardt, W.D.3
-
14
-
-
2342604434
-
Ectopic gene conversions in four Escherichia coli genomes: increased recombination in pathogenic strains
-
Morris R.T., and Drouin G. Ectopic gene conversions in four Escherichia coli genomes: increased recombination in pathogenic strains. J. Mol. Evol. 58 (2004) 596-605
-
(2004)
J. Mol. Evol.
, vol.58
, pp. 596-605
-
-
Morris, R.T.1
Drouin, G.2
-
15
-
-
0026002819
-
Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution
-
Sharp P.M. Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution. J. Mol. Evol. 33 (1991) 23-33
-
(1991)
J. Mol. Evol.
, vol.33
, pp. 23-33
-
-
Sharp, P.M.1
-
16
-
-
0030602858
-
Homologous recombination between the tuf genes of Salmonella typhimurium
-
Abdulkarim F., and Hughes D. Homologous recombination between the tuf genes of Salmonella typhimurium. J. Mol. Biol. 260 (1996) 506-522
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 506-522
-
-
Abdulkarim, F.1
Hughes, D.2
-
17
-
-
0035800661
-
Evolution of tuf genes: ancient duplication, differential loss and gene conversion
-
Lathe W.C., and Bork P. Evolution of tuf genes: ancient duplication, differential loss and gene conversion. FEBS Lett. 502 (2001) 113-116
-
(2001)
FEBS Lett.
, vol.502
, pp. 113-116
-
-
Lathe, W.C.1
Bork, P.2
-
18
-
-
0346364657
-
Amino acid properties and consequences of substitutions
-
Wiley, New York
-
Betts M.J., and Russell R.B. Amino acid properties and consequences of substitutions. Bioinformatics for Geneticists (2003), Wiley, New York 289-316
-
(2003)
Bioinformatics for Geneticists
, pp. 289-316
-
-
Betts, M.J.1
Russell, R.B.2
-
19
-
-
0036017378
-
Characterization of the gene conversions between the multigene family members of the yeast genome
-
Drouin G. Characterization of the gene conversions between the multigene family members of the yeast genome. J. Mol. Evol. 55 (2002) 14-23
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 14-23
-
-
Drouin, G.1
-
20
-
-
0030013563
-
Gene conversion and natural selection in the evolution of X-linked color vision genes in higher primates
-
Zhou Y.H., and Li W.-H. Gene conversion and natural selection in the evolution of X-linked color vision genes in higher primates. Mol. Biol. Evol. 13 (1996) 780-783
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 780-783
-
-
Zhou, Y.H.1
Li, W.-H.2
-
21
-
-
1542316918
-
Gene conversion and the evolution of protocadherin gene cluster diversity
-
Noonan J.P., Grimwood J., Schmutz J., Dickson M., and Myers R.M. Gene conversion and the evolution of protocadherin gene cluster diversity. Genome Res. 14 (2004) 354-366
-
(2004)
Genome Res.
, vol.14
, pp. 354-366
-
-
Noonan, J.P.1
Grimwood, J.2
Schmutz, J.3
Dickson, M.4
Myers, R.M.5
-
22
-
-
0006899971
-
The evolution of prokaryotes: does sex matter?
-
Maynard Smith J. The evolution of prokaryotes: does sex matter?. Annu. Rev. Ecol. Sys. 21 (1990) 1-12
-
(1990)
Annu. Rev. Ecol. Sys.
, vol.21
, pp. 1-12
-
-
Maynard Smith, J.1
-
23
-
-
0343696952
-
Evidence for clonal population structure in Escherichia coli
-
Ochman H., and Selander R.K. Evidence for clonal population structure in Escherichia coli. Proc. Natl. Acad. Sci. USA 81 (1984) 198-201
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 198-201
-
-
Ochman, H.1
Selander, R.K.2
-
24
-
-
0024077312
-
Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli
-
DuBose R.F., Dykhuizen D.E., and Hartl D.L. Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli. Proc. Natl. Acad. Sci. USA 85 (1988) 7036-7040
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 7036-7040
-
-
DuBose, R.F.1
Dykhuizen, D.E.2
Hartl, D.L.3
-
26
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson W.R., and Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85 (1988) 2444-2448
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
27
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
28
-
-
49349110006
-
-
S.A. Sawyer, GENECONV: a computer package for the statistical detection of gene conversion (1999). Distributed by the author, Department of Mathematics, Washington University, available at http://www.math.wustl.edu/~sawyer.
-
S.A. Sawyer, GENECONV: a computer package for the statistical detection of gene conversion (1999). Distributed by the author, Department of Mathematics, Washington University, available at http://www.math.wustl.edu/~sawyer.
-
-
-
-
29
-
-
0032826401
-
Detecting and characterizing gene conversions between multigene family members
-
Drouin G., Prat F., Ell M., and Clarke G.D.P. Detecting and characterizing gene conversions between multigene family members. Mol. Biol. Evol. 16 (1999) 1369-1390
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1369-1390
-
-
Drouin, G.1
Prat, F.2
Ell, M.3
Clarke, G.D.P.4
-
30
-
-
0035923699
-
Evaluation of methods for detecting recombination from DNA sequences: computer simulations
-
Posada D., and Crandall K.A. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. USA 98 (2001) 13757-13762
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 13757-13762
-
-
Posada, D.1
Crandall, K.A.2
-
31
-
-
0036097812
-
Evaluation of methods for detecting recombination from DNA sequences: empirical data
-
Posada D. Evaluation of methods for detecting recombination from DNA sequences: empirical data. Mol. Biol. Evol. 19 (2002) 708-717
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 708-717
-
-
Posada, D.1
-
32
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. CABIOS 13 (1997) 555-556
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
33
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang Z., and Nielsen R. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17 (2000) 32-43
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
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