Review. Genetic exchange and the origin of adaptations: Prokaryotes to primates

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 363, Issue 1505, 2008, Pages 2813-2820

  Arnold, Michael L ^a   Sapir, Yuval ^a   Martin, Noland H ^b  

^a University of Georgia ^*  (United States)

^b Texas State University   (United States)

Author keywords

Adaptation; Horizontal transfer; Introgressive hybridization

Indexed keywords

ADAPTATION; GENE TRANSFER; HYBRIDIZATION; INTROGRESSION; LITERATURE REVIEW; PRIMATE; PROKARYOTE;

ANIMALIA; BACTERIA (MICROORGANISMS); FUNGI; PRIMATES; PROKARYOTA;

EID: 48749102376     PISSN: 09628436     EISSN: None     Source Type: Journal    
DOI: 10.1098/rstb.2008.0021     Document Type: Review

References (58)

1. Anderson, E. 1948 Hybridization of the habitat. Evolution 2, 1-9. (doi:10.2307/2405610)
2. Anderson, E. 1949 Introgressive hybridization. New York, NY: Wiley.
3. Anderson, E. & Hubricht, L. 1938 Hybridization in Tradescantia. III. The evidence for introgressive hybridization. Am. J. Bot. 25, 396-402. (doi:10.2307/2436413)
4. Arnold, M. L. 1997 Natural hybridization and evolution. Oxford, UK: Oxford University Press.
5. Arnold, M. L. 2006 Evolution through genetic exchange. Oxford, UK: Oxford University Press.
6. Arnold, M. L. & Larson, E. J. 2004 Evolution's new look. Wils. Q. (Autumn), 60-72.
7. Arnold, M. L. & Meyer, A. 2006 Natural hybridization in primates: one evolutionary mechanism. Zoology 109, 261-276. (doi:10.1016/j.zool.2006.03.006)
8. Borge, T., Lindroos, K., Nádvorník, P., Syvänen, A.-C. & Sætre, G.-P. 2005 Amount of introgression in flycatcher hybrid zones reflects regional differences in pre and postzygotic barriers to gene exchange. J. Evol. Biol. 18, 1416-1424.
9. Bouck, A. C., Peeler, R., Arnold, M. L. & Wessler, S. R. 2005 Genetic mapping of species boundaries in Louisiana irises using IRRE retrotransposon display markers. Genetics 171, 1289-1303. (doi:10.1534/genetics.105.044552)
10. Brasier, C. M. 2001 Rapid evolution of introduced plant pathogens via interspecific hybridization. BioScience 51, 123-133. (doi:10.1641/0006-3568(2001)051[0123:REOIPP]2.0.CO;2)
11. Brasier, C. M. & Kirk, S. A. 2001 Designation of the EAN and NAN races of Ophiostoma novo-ulmi as subspecies. Mycol. Res. 105, 547-554. (doi:10.1017/S0953756201004087)
12. Brumfield, R. T., Jernigan, R. W., McDonald, D. B. & Braun, M. J. 2001 Evolutionary implications of divergent clines in an avian (Manacus: Aves) hybrid zone. Evolution 55, 2070-2087. (doi:10.1111/j.0014- 3820.2001.tb01322.x)
13. Claesson, M. J. et al. 2006 Multireplicon genome architecture of Lactobacillus salivarius. Proc. Natl Acad. Sci. USA 103, 6718-6723. (doi:10.1073/pnas.0511060103)
14. Cornman, R. S., Burke, J. M., Wesselingh, R. A. & Arnold, M. L. 2004 Contrasting genetic structure of adults and progeny in a Louisiana iris hybrid population. Evolution 58, 2669-2681. (doi:10.1554/04-321)
15. Cruzan, M. B. & Arnold, M. L. 1993 Ecological and genetic associations in an Iris hybrid zone. Evolution 47, 1432-1445. (doi:10.2307/2410158)
16. Doolittle, W. F. & Bapteste, E. 2007 Pattern pluralism and the Tree of Life hypothesis. Proc. Natl Acad. Sci. USA 104, 2043-2049. (doi:10.1073/pnas.0610699104)
17. Evans, P. D., Anderson, J. R., Vallender, E. J., Choi, S. S. & Lahn, B. T. 2004 Reconstructing the evolutionary history of microcephalin, a gene controlling human brain size. Hum. Mol. Genet. 13, 1139-1145. (doi:10.1093/hmg/ddh126)
18. Evans, P. D., Gilbert, S. L., Mekel-Bobrov, N., Vallender, E. J., Anderson, J. R., Vaez-Azizi, L. M., Tishkoff, S. A., Hudson, R. R. & Lahn, B. T. 2005 Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans. Science 309, 1717-1720. (doi:10.1126/science.1113722)
19. Evans, P. D., Mekel-Bobrov, N., Vallender, E. J., Hudson, R. R. & Lahn, B. T. 2006 Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage. Proc. Natl Acad. Sci. USA 103, 18 178-18 183. (doi:10.1073/pnas.0606966103)
20. Finlayson, C. 2005 Biogeography and evolution of the genus Homo. Trends Ecol. Evol. 20, 457-463. (doi:10.1016/j.tree.2005.05.019)
21. Flynn, S., van Sinderen, D., Thornton, G. M., Holo, H., Nes, I. F. & Collins, J. K. 2002 Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118. Microbiology 148, 973-984.
22. Garrigan, D., Mobasher, Z., Severson, T., Wilder, J. A. & Hammer, M. F. 2005 Evidence for archaic Asian ancestry on the human X chromosome. Mol. Biol. Evol. 22, 189-192. (doi:10.1093/molbev/msi013)
23. Grant, P. R. & Grant, B. R. 1992 Hybridization of bird species. Science 256, 193-197. (doi:10.1126/science.256.5054.193)
24. Grant, B. R. & Grant, P. R. 2008 Fission and fusion of Darwin's finches populations. Phil. Trans. R. Soc. B 363, 2821-2829. (doi:10.1098/rstb.2008.0051)
25. Jackson, A. P. et al. 2002 Identification of microcephalin, a protein implicated in determining the size of the human brain. Am. J. Hum. Genet. 71, 136-142. (doi:10.1086/341283)
26. Jiggins, C. D., McMillan, W. O., King, P. & Mallet, J. 1997 The maintenance of species differences across a Heliconius hybrid zone. Heredity 79, 495-505.
27. Jiggins, C. D., Naisbit, R. E., Coe, R. L. & Mallet, J. 2001 Reproductive isolation caused by colour pattern mimicry. Nature 411, 302-305. (doi:10.1038/35077075)
28. Jiggins, C. D., Mallarino, R., Willmott, K. R. & Bermingham, E. 2006 The phylogenetic pattern of speciation and wing pattern change in neotropical Ithomia butterflies (Lepidoptera: Nymphalidae). Evolution 60, 1454-1466. (doi:10.1554/05-483.1)
29. Johnston, J. A., Wesselingh, R. A., Bouck, A. C., Donovan, L. A. & Arnold, M. L. 2001 Intimately linked or hardly speaking? The relationship between genotypic variation and environmental gradients in a Louisiana iris hybrid population. Mol. Ecol. 10, 673-681. (doi:10.1046/j.1365- 294x.2001.01217.x)
30. Jolly, C. J. 2001 A proper study for mankind: analogies from the papionin monkeys and their implications for human evolution. Yearb. Phys. Anthropol. 44, 177-204. (doi:10.1002/ajpa.10021)
31. Jordan, I. K., Makarova, K. S., Spouge, J. L., Wolf, Y. I. & Koonin, E. V. 2001 Lineage-specific gene expansions in bacterial and archaeal genomes. Genome Res. 11, 555-565. (doi:10.1101/gr.GR-1660R)
32. Kentner, E. K., Arnold, M. L. & Wessler, S. R. 2003 Characterization of high copy number retrotransposons from the large genomes of the Louisiana iris species and their use as molecular markers. Genetics 164, 685-697.
33. Kronforst, M. R., Young, L. G., Blume, L. M. & Gilbert, L. E. 2006 Multilocus analyses of admixture and introgression among hybridizing Heliconius butterflies. Evolution 60, 1254-1268.
34. Makarova, K. et al. 2006 Comparative genomics of the lactic acid bacteria. Proc. Natl Acad. Sci. USA 103, 15 611-15 616. (doi:10.1073/pnas.0607117103)
35. Mallet, J. 2005 Hybridization as an invasion of the genome. Trends Ecol. Evol. 20, 229-237. (doi:10.1016/j.tree.2005.02.010)
36. Martin, N. H., Bouck, A. C. & Arnold, M. L. 2005 Loci affecting long-term hybrid survivability in Louisiana irises: implications for reproductive isolation and introgression. Evolution 59, 2116-2124.
37. Martin, N. H., Bouck, A. C. & Arnold, M. L. 2006 Detecting adaptive trait introgression between Iris fulva and I. brevicaulis in highly selective field conditions. Genetics 172, 2481-2489. (doi:10.1534/genetics.105.053538)
38. Mavárez, J., Salazar, C. A., Bermingham, E., Salcedo, C., Jiggins, C. D. & Linares, M. 2006 Speciation by hybridization in Heliconius butterflies. Nature 441, 868-871. (doi:10.1038/nature04738)
39. McCarthy, J. et al. 2003 Double blind, placebo controlled trial of two probiotic strains in interleukin 10 knockout mice and mechanistic link with cytokine balance. Gut 52, 975-980. (doi:10.1136/gut.52.7.975)
40. McDonald, D. B., Clay, R. P., Brumfield, R. T. & Braun, M. J. 2001 Sexual selection on plumage and behavior in an avian hybrid zone: experimental tests of male-male interactions. Evolution 55, 1443-1451. (doi:10.1111/j.0014-3820.2001.tb00664.x)
41. Navarro, A. & Barton, N. H. 2003 Chromosomal speciation and molecular divergence - accelerated evolution in rearranged chromosomes. Science 300, 321-324. (doi:10.1126/science.1080600)
42. Ochman, H. 2005 Genomes on the shrink. Proc. Natl Acad. Sci. USA 102, 11 959-11 960. (doi:10.1073/pnas.0505863102)
43. Ochman, H., Lawrence, J. G. & Groisman, E. A. 2000 Lateral gene transfer and the nature of bacterial innovation. Nature 405, 299-304. (doi:10.1038/35012500)
44. Osada, N. & Wu, C.-I. 2005 Inferring the mode of speciation from genomic data: a study of the great apes. Genetics 169, 259-264. (doi:10.1534/genetics.104.029231)
45. Paoletti, M., Buck, K. W. & Brasier, C. M. 2006 Selective acquisition of novel mating type and vegetative incompatibility genes via interspecies gene transfer in the globally invading eukaryote Ophiostoma novo-ulmi. Mol. Ecol. 15, 249-262. (doi:10.1111/j.1365-294X.2005.02728.x)
46. Parsons, T. J., Olson, S. L. & Braun, M. J. 1993 Unidirectional spread of secondary sexual plumage traits across an avian hybrid zone. Science 260, 1643-1646. (doi:10.1126/science.260.5114.1643)
47. Rieseberg, L. H. 1997 Hybrid origins of plant species. Annu. Rev. Ecol. Syst. 28, 359-389. (doi:10.1146/annurev.ecolsys.28.1.359)
48. Riley, H. P. 1938 A character analysis of colonies of Iris fulva, Iris hexagona var. giganticaerulea and natural hybrids. Am. J. Bot. 25, 727-738. (doi:10.2307/2436599)
49. Riley, M. A. & Wertz, J. E. 2002 Bacteriocin diversity: ecological and evolutionary perspectives. Biochimie 84, 357-364. (doi:10.1016/S0300-9084(02)01421-9)
50. Sætre, G.-P., Borge, T., Lindell, J., Moum, T., Primmer, C. R., Sheldon, B. C., Johnsen, A. & Ellegren, H. 2001 Speciation, introgressive hybridization and nonlinear rate of molecular evolution in flycatchers. Mol. Ecol. 10, 737-749. (doi:10.1046/j.1365-294x.2001.01208.x)
51. Sætre, G.-P., Borge, T., Lindroos, K., Haavie, J., Sheldon, B. C., Primmer, C. & Syvänen, A.-C. 2003Sex chromosome evolution and speciation in Ficedula flycatchers. Proc. R. Soc. B 270, 53-59. (doi:10.1098/rspb.2002.2204)
52. Seehausen, O. 2004 Hybridization and adaptive radiation. Trends Ecol. Evol. 19, 198-207. (doi:10.1016/j.tree.2004.01.003)
53. Sheil, B., McCarthy, J., O'Mahony, L., Bennett, M. W., Ryan, P., Fitzgibbon, J. J., Kiely, B., Collins, J. K. & Shanahan, F. 2004 Is the mucosal route of administration essential for probiotic function? Subcutaneous administration is associated with attenuation ofmurine colitis and arthritis. Gut 53, 694-700. (doi:10.1136/gut.2003.027789)
54. Stein, A. C. & Uy, J. A. C. 2006 Unidirectional introgression of a sexually selected trait across an avian hybrid zone: a role for female choice? Evolution 60, 1476-1485. (doi:10.1554/05-575.1)
55. Stringer, C. B. & Andrews, P. 1988 Genetic and fossil evidence for the origin of modern humans. Science 239, 1263-1268. (doi:10.1126/science.3125610)
56. Tegelström, H. & Gelter, H. P. 1990 Haldane's rule and sex biased gene flow between two hybridizing flycatcher species (Ficedula albicollis and F. hypoleuca, Aves: Muscicapidae). Evolution 44, 2012-2021. (doi:10.2307/2409611)
57. Viosca Jr, P. 1935 The irises of southeastern Louisiana - a taxonomic and ecological interpretation. Bull. Am. Iris Soc. 57, 3-56.
58. Wang, Y.-Q. & Su, B. 2004 Molecular evolution of microcephalin, a gene determining human brain size. Hum. Mol. Genet. 13, 1131-1137. (doi:10.1093/hmg/ddh127)