-
1
-
-
33745155105
-
Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements
-
Antoniewicz MR, Kelleher JK, Stephanopoulos G. 2006. Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements. Metab Eng 8(4):324-337.
-
(2006)
Metab Eng
, vol.8
, Issue.4
, pp. 324-337
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
2
-
-
35348941242
-
Accurate assessment of amino acid mass isotopomer distributions for metabolic flux analysis
-
Antoniewicz MR, Kelleher JK, Stephanopoulos G. 2007a. Accurate assessment of amino acid mass isotopomer distributions for metabolic flux analysis. Anal Chem 79(19):7554-7559.
-
(2007)
Anal Chem
, vol.79
, Issue.19
, pp. 7554-7559
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
3
-
-
33845679072
-
Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions
-
Antoniewicz MR, Kelleher JK, Stephanopoulos G. 2007b. Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions. Metab Eng 9(1):68-86.
-
(2007)
Metab Eng
, vol.9
, Issue.1
, pp. 68-86
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
4
-
-
34249297627
-
Metabolic flux analysis in a nonstationary system: Fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol
-
Antoniewicz MR, Kraynie DF, Laffend LA, González-Lergier J, Kelleher JK, Stephanopoulos G. 2007c. Metabolic flux analysis in a nonstationary system: Fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol. Metab Eng 9(3):277-292.
-
(2007)
Metab Eng
, vol.9
, Issue.3
, pp. 277-292
-
-
Antoniewicz, M.R.1
Kraynie, D.F.2
Laffend, L.A.3
González-Lergier, J.4
Kelleher, J.K.5
Stephanopoulos, G.6
-
5
-
-
0025895183
-
Toward a science of metabolic engineering
-
Bailey JE. 1991. Toward a science of metabolic engineering. Science 252(5013):1668-1675.
-
(1991)
Science
, vol.252
, Issue.5013
, pp. 1668-1675
-
-
Bailey, J.E.1
-
7
-
-
0000930401
-
CONOPT - A large-scale GRG code
-
Drud A. 1994. CONOPT - A large-scale GRG code. ORSA J Comput 6(2):207-216.
-
(1994)
ORSA J Comput
, vol.6
, Issue.2
, pp. 207-216
-
-
Drud, A.1
-
8
-
-
0035817410
-
Using isotopomer path tracing to quantify metabolic fluxes in pathway models containing reversible reactions
-
Forbes NS, Clark DS, Blanch HW. 2001. Using isotopomer path tracing to quantify metabolic fluxes in pathway models containing reversible reactions. Biotechnol Bioeng 74(3):196-211.
-
(2001)
Biotechnol Bioeng
, vol.74
, Issue.3
, pp. 196-211
-
-
Forbes, N.S.1
Clark, D.S.2
Blanch, H.W.3
-
9
-
-
0024666749
-
Optimization model for generic rank determination of structural matrices
-
Georgiou A, Floudas CA. 1989. Optimization model for generic rank determination of structural matrices. Int J Control 49(5):1633-1644.
-
(1989)
Int J Control
, vol.49
, Issue.5
, pp. 1633-1644
-
-
Georgiou, A.1
Floudas, C.A.2
-
10
-
-
33747766257
-
A three-level problem-centric strategy for selecting NMR precursor labeling and analytes
-
Ghosh S, Grossmann IE, Ataai MM, Domach MM. 2006. A three-level problem-centric strategy for selecting NMR precursor labeling and analytes. Metab Eng 8(5):491-507.
-
(2006)
Metab Eng
, vol.8
, Issue.5
, pp. 491-507
-
-
Ghosh, S.1
Grossmann, I.E.2
Ataai, M.M.3
Domach, M.M.4
-
11
-
-
84985507273
-
Assigning output variables to equations using linear programming
-
Gupta PK, Westerberg AW, Hendry JE, Hughes RR. 1974. Assigning output variables to equations using linear programming. AIChE J 20(2):397-399.
-
(1974)
AIChE J
, vol.20
, Issue.2
, pp. 397-399
-
-
Gupta, P.K.1
Westerberg, A.W.2
Hendry, J.E.3
Hughes, R.R.4
-
12
-
-
0001009871
-
5/2 algorithm for maximum matchings in bipartite graphs
-
5/2 algorithm for maximum matchings in bipartite graphs. SIAM J Comput 2(4):225-231.
-
(1973)
SIAM J Comput
, vol.2
, Issue.4
, pp. 225-231
-
-
Hopcroft, J.E.1
Karp, R.M.2
-
13
-
-
48649083011
-
-
ILOG. 2006. ILOG CPLEX 10.1 User's Manual. Mountain View, CA: ILOG Inc.
-
ILOG. 2006. ILOG CPLEX 10.1 User's Manual. Mountain View, CA: ILOG Inc.
-
-
-
-
14
-
-
0037908691
-
Metabolic isotopomer labeling systems. Part II. Structural flux identifiability analysis
-
Isermann N, Wiechert W. 2003. Metabolic isotopomer labeling systems. Part II. Structural flux identifiability analysis. Math Biosci 183(2):175-214.
-
(2003)
Math Biosci
, vol.183
, Issue.2
, pp. 175-214
-
-
Isermann, N.1
Wiechert, W.2
-
15
-
-
0016072062
-
Structural controllability
-
Lin C-T. 1974. Structural controllability. IEEE Trans Automat Control 19(3):201-208.
-
(1974)
IEEE Trans Automat Control
, vol.19
, Issue.3
, pp. 201-208
-
-
Lin, C.-T.1
-
16
-
-
4243829380
-
Bidirectional reaction steps in metabolic networks. IV. Optimal design of isotopomer labeling experiments
-
Möllney M, Wiechert W, Kownatzki D, de Graaf AA. 1999. Bidirectional reaction steps in metabolic networks. IV. Optimal design of isotopomer labeling experiments. Biotechnol Bioeng 66(2):86-103.
-
(1999)
Biotechnol Bioeng
, vol.66
, Issue.2
, pp. 86-103
-
-
Möllney, M.1
Wiechert, W.2
Kownatzki, D.3
de Graaf, A.A.4
-
17
-
-
0040095902
-
Scaling and structural condition numbers
-
Neumaier A. 1997. Scaling and structural condition numbers. Linear Algebra Appl 263(1-3):157-165.
-
(1997)
Linear Algebra Appl
, vol.263
, Issue.1-3
, pp. 157-165
-
-
Neumaier, A.1
-
18
-
-
0347506028
-
It is all about metabolic fluxes
-
Nielsen J. 2003. It is all about metabolic fluxes. J Bacteriol 185(24):7031-7035.
-
(2003)
J Bacteriol
, vol.185
, Issue.24
, pp. 7031-7035
-
-
Nielsen, J.1
-
19
-
-
33646892443
-
Planning optimal measurements of isotopomer distributions for estimation of metabolic fluxes
-
Rantanen A, Mielikäinen T, Rousu J, Maaheimo H, Ukkonen E. 2006. Planning optimal measurements of isotopomer distributions for estimation of metabolic fluxes. Bioinformatics 22(10):1198-1206.
-
(2006)
Bioinformatics
, vol.22
, Issue.10
, pp. 1198-1206
-
-
Rantanen, A.1
Mielikäinen, T.2
Rousu, J.3
Maaheimo, H.4
Ukkonen, E.5
-
20
-
-
0344328817
-
An expanded genomescale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
Reed JL, Vo TD, Schilling CH, Palsson BO. 2003. An expanded genomescale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol 4(9):R54.
-
(2003)
Genome Biol
, vol.4
, Issue.9
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
21
-
-
15744402909
-
A global optimization approach for metabolic flux analysis based on labeling balances
-
Riascos CAM, Gombert AK, Pinto JM. 2005. A global optimization approach for metabolic flux analysis based on labeling balances. Comput Chem Eng 29(3):447-458.
-
(2005)
Comput Chem Eng
, vol.29
, Issue.3
, pp. 447-458
-
-
Riascos, C.A.M.1
Gombert, A.K.2
Pinto, J.M.3
-
22
-
-
33846061120
-
13C-based flux analysis
-
13C-based flux analysis. Mol Syst Biol 2:62.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 62
-
-
Sauer, U.1
-
23
-
-
0343471424
-
Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices
-
Schmidt K, Carlsen M, Nielsen J, Villadsen J. 1997. Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices. Biotechnol Bioeng 55(6):831-840.
-
(1997)
Biotechnol Bioeng
, vol.55
, Issue.6
, pp. 831-840
-
-
Schmidt, K.1
Carlsen, M.2
Nielsen, J.3
Villadsen, J.4
-
24
-
-
0016944201
-
Structural controllability of multiinput linear systems
-
Shields RW, Pearson JB. 1976. Structural controllability of multiinput linear systems. IEEE Trans Automat Control 21(2):203-212.
-
(1976)
IEEE Trans Automat Control
, vol.21
, Issue.2
, pp. 203-212
-
-
Shields, R.W.1
Pearson, J.B.2
-
26
-
-
0032600888
-
Metabolic fluxes and metabolic engineering
-
Stephanopoulos G. 1999. Metabolic fluxes and metabolic engineering. Metab Eng 1(1):1-11.
-
(1999)
Metab Eng
, vol.1
, Issue.1
, pp. 1-11
-
-
Stephanopoulos, G.1
-
27
-
-
35548947590
-
13C labeled isotopes
-
13C labeled isotopes. Metab Eng 9(5-6):387-405.
-
(2007)
Metab Eng
, vol.9
, Issue.5-6
, pp. 387-405
-
-
Suthers, P.F.1
Burgard, A.P.2
Dasika, M.S.3
Nowroozi, F.4
van Dien, S.5
Keasling, J.D.6
Maranas, C.D.7
-
28
-
-
2942665751
-
Global optimization of mixed-integer nonlinear programs: A theoretical and computational study
-
Tawarmalani M, Sahinidis NV. 2004. Global optimization of mixed-integer nonlinear programs: A theoretical and computational study. Math Program 99(3):563-591.
-
(2004)
Math Program
, vol.99
, Issue.3
, pp. 563-591
-
-
Tawarmalani, M.1
Sahinidis, N.V.2
-
32
-
-
0034741983
-
13C metabolic flux analysis
-
13C metabolic flux analysis. Metab Eng 3(3):195-206.
-
(2001)
Metab Eng
, vol.3
, Issue.3
, pp. 195-206
-
-
Wiechert, W.1
-
33
-
-
0343267841
-
Bidirectional reaction steps in metabolic networks. III. Explicit solution and analysis of isotopomer labeling systems
-
Wiechert W, Möllney M, Isermann N, Wurzel M, de Graaf AA. 1999. Bidirectional reaction steps in metabolic networks. III. Explicit solution and analysis of isotopomer labeling systems. Biotechnol Bioeng 66(2): 69-85.
-
(1999)
Biotechnol Bioeng
, vol.66
, Issue.2
, pp. 69-85
-
-
Wiechert, W.1
Möllney, M.2
Isermann, N.3
Wurzel, M.4
de Graaf, A.A.5
-
34
-
-
33847719466
-
Metabolic flux estimation: A self-adaptive evolutionary algorithm with singular value decomposition. IEEE-ACM Trans
-
Yang J, Wongsa S, Kadirkamanathan V, Billings SA, Wright PC. 2007. Metabolic flux estimation: A self-adaptive evolutionary algorithm with singular value decomposition. IEEE-ACM Trans Comput Biol 4(1): 126-138.
-
(2007)
Comput Biol
, vol.4
, Issue.1
, pp. 126-138
-
-
Yang, J.1
Wongsa, S.2
Kadirkamanathan, V.3
Billings, S.A.4
Wright, P.C.5
-
35
-
-
38449111120
-
An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis
-
Young JD, Walther JL, Antoniewicz MR, Yoo H, Stephanopoulos G. 2007. An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis. Biotechnol Bioeng 99(3):686-699.
-
(2007)
Biotechnol Bioeng
, vol.99
, Issue.3
, pp. 686-699
-
-
Young, J.D.1
Walther, J.L.2
Antoniewicz, M.R.3
Yoo, H.4
Stephanopoulos, G.5
-
36
-
-
0028036096
-
Modeling of isotope distributions and intracellular fluxes in metabolic networks using atom mapping matrices
-
Zupke C, Stephanopoulos G. 1994. Modeling of isotope distributions and intracellular fluxes in metabolic networks using atom mapping matrices. Biotechnol Prog 10(5):489-498.
-
(1994)
Biotechnol Prog
, vol.10
, Issue.5
, pp. 489-498
-
-
Zupke, C.1
Stephanopoulos, G.2
|